Miyakogusa Predicted Gene
- Lj4g3v1876850.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1876850.1 Non Chatacterized Hit- tr|K4C8J1|K4C8J1_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,58.33,4e-17,CYTOPLASMIC DYNEIN LIGHT CHAIN,NULL; DYNEIN LIGHT
CHAIN,Dynein light chain, type 1/2; Dynein_light,D,gene.g55628.t1.1
(264 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20110.1 | Symbols: | Dynein light chain type 1 family prote... 113 1e-25
AT1G23220.1 | Symbols: | Dynein light chain type 1 family prote... 57 9e-09
AT3G16120.1 | Symbols: | Dynein light chain type 1 family prote... 50 1e-06
AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-... 49 3e-06
AT4G15930.1 | Symbols: | Dynein light chain type 1 family prote... 48 6e-06
>AT5G20110.1 | Symbols: | Dynein light chain type 1 family protein
| chr5:6791542-6793253 REVERSE LENGTH=209
Length = 209
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 67/104 (64%), Gaps = 19/104 (18%)
Query: 123 GIIVEEGRKSVSHIETKYAAAEKARGGFDEGRKSVSQIETFSSVAAYLQVKVLVSDMPSF 182
G EEGRKSVSH+E R + ++IE + A L V++L +DMP F
Sbjct: 87 GGAAEEGRKSVSHVE----------------RDTAARIE---AAAEMLTVRILAADMPGF 127
Query: 183 MQVHAFRCARRTHDSQEKFSSKHIAHNIKKEFDKAYGPVWHCIV 226
MQ HAFRCAR T DS EKFSSKH+A N+KKEFDK YGP WHCIV
Sbjct: 128 MQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIV 171
>AT1G23220.1 | Symbols: | Dynein light chain type 1 family protein
| chr1:8242614-8244136 FORWARD LENGTH=129
Length = 129
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 170 LQVKVLVSDMPSFMQVHAFRCARRTHDSQE-KFSSKHIAHNIKKEFDKAYGPVWHCIV 226
V+V SDMP Q AF +R ++ K +K +AH +KK+FD AYGP WHCIV
Sbjct: 34 FNVRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIV 91
>AT3G16120.1 | Symbols: | Dynein light chain type 1 family protein
| chr3:5465035-5465395 FORWARD LENGTH=93
Length = 93
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 171 QVKVLVSDMPSFMQVHAFRCARRTHDSQEKFSSKHIAHNIKKEFDKAYGPVWHCIV 226
+ KV +DMP MQ+ A + A ++ D + F S IA +IKKEFD+ YG W C+V
Sbjct: 5 KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60
>AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
guanyl-nucleotide exchange factor 11 |
chr1:19458844-19459235 REVERSE LENGTH=94
Length = 94
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 170 LQVKVLV--SDMPSFMQVHAFRCARRTHDSQEKFSSKHIAHNIKKEFDKAYGPVWHCIV 226
L+ K +V SDMP MQ+ A A + D + F K IA +IKKEFD+ YG W C+V
Sbjct: 2 LEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60
>AT4G15930.1 | Symbols: | Dynein light chain type 1 family protein
| chr4:9036344-9037825 FORWARD LENGTH=123
Length = 123
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 150 FDEGRKSVSQIETFSSVAAYLQVKVLVSDMPSFMQVHAFRCARRTHDSQEKFS-SKHIAH 208
D+ R S+ ++E +S A + + +DM MQ A A EK+S K IA
Sbjct: 20 LDDRRSSLPEVE--ASPPAGKRAVIKSADMKDDMQKEAIEIAISAF---EKYSVEKDIAE 74
Query: 209 NIKKEFDKAYGPVWHCIV 226
NIKKEFDK +G WHCIV
Sbjct: 75 NIKKEFDKKHGATWHCIV 92