Miyakogusa Predicted Gene

Lj4g3v1876790.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1876790.1 tr|G7JE32|G7JE32_MEDTR Ein3-binding f-box protein
OS=Medicago truncatula GN=MTR_4g114640 PE=4 SV=1,62.5,0.000000002,zinc
finger,Zinc finger, CCCH-type; no description,NULL; seg,NULL;
zf-CCCH,Zinc finger, CCCH-type; S,CUFF.49775.1
         (508 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G02160.1 | Symbols:  | CCCH-type zinc finger family protein |...   167   1e-41

>AT2G02160.1 | Symbols:  | CCCH-type zinc finger family protein |
           chr2:553407-555899 REVERSE LENGTH=669
          Length = 669

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/379 (35%), Positives = 181/379 (47%), Gaps = 49/379 (12%)

Query: 2   DEDLLKRNTDCVYFLASPLTCKKGAECEYRHNEVARLNPRDCWYWLSGSCLNPTCAFRHP 61
           +ED LK NTDCVYFLASPLTCKKG ECEYRH+E AR+NPRDC+YWL+G+CLNP C FRHP
Sbjct: 25  EEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHP 84

Query: 62  PLDGHTGGP-SEPAKSSLPPYKTM---------VPCYYFYNGFCNKGDRCSFLHGPDDSF 111
           PL+G  G     PA S  P + T          VPC +F  G C KGD CSFLH P+ + 
Sbjct: 85  PLEGLLGNQGGAPAVSVQPIHATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTPNPAA 144

Query: 112 ------LSAKPVKNDNGSTTSTLKLENKTSSGNKTGV-ASTPSETHVDQSLTASKASSDF 164
                 + AKP  +      S   +EN T       V  S   + H D S     AS+  
Sbjct: 145 YKKQHPVEAKPATD---PQCSKKPIENNTEEKKLPDVNLSKVVKGHTDISAAPRVASTG- 200

Query: 165 KLQPKEDPQLPLPENVGQKGDCLELSALDCKAASVTGSDSLLPDDGFVRKTSDLHTEESS 224
            L+     +  +P +VG +   ++       + +  G  + L         +  H  + +
Sbjct: 201 -LRDSRSVEGYIPNHVGYE-PVVQRKGPGFPSFTEGGHSTQLLQKYGSDDNNSFHNGKDA 258

Query: 225 EEQVNSHIEPEERWESSPGFDVLVQDESEILGYEDDSEYLPVLDMDDQGLNEQYSGYEFK 284
           ++ +          ESSPGFDVLV +E+       DSEY  V D    G   Q  G    
Sbjct: 259 DDVLR---------ESSPGFDVLVDNEA------GDSEYYHVEDR--YGRRSQERGNSEY 301

Query: 285 DPAEYDTMCPDDDILYEQGTNDVYRCFDRDFMYANGGKNHAYTREIILD-SIFSR----K 339
           DP        D + L EQ  +   R  DR +    G +  +  RE  LD  +++     +
Sbjct: 302 DPDFSAIADGDKEALREQRFDSYDRREDRGW----GHRRVSSEREDRLDRRVYAEDERSE 357

Query: 340 RIHISDLRDHLRGRREING 358
            I  SDLR  L  +R+ NG
Sbjct: 358 NILESDLRYRLAKQRKGNG 376