Miyakogusa Predicted Gene

Lj4g3v1844680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1844680.1 Non Chatacterized Hit- tr|I1HPB4|I1HPB4_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,34.32,0.00000000000001,Tudor-like domain present in plant
sequences,Tudor-like, plant; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT,CUFF.49765.1
         (364 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32440.1 | Symbols:  | Plant Tudor-like RNA-binding protein |...   200   1e-51
AT4G32440.2 | Symbols:  | Plant Tudor-like RNA-binding protein |...   200   1e-51
AT5G20030.1 | Symbols:  | Plant Tudor-like RNA-binding protein |...   194   1e-49
AT4G32440.3 | Symbols:  | Plant Tudor-like RNA-binding protein |...   162   2e-40
AT2G25590.1 | Symbols:  | Plant Tudor-like protein | chr2:108912...   151   5e-37
AT3G06520.1 | Symbols:  | agenet domain-containing protein | chr...    64   1e-10
AT1G09320.1 | Symbols:  | agenet domain-containing protein | chr...    51   1e-06

>AT4G32440.1 | Symbols:  | Plant Tudor-like RNA-binding protein |
           chr4:15657295-15658692 FORWARD LENGTH=377
          Length = 377

 Score =  200 bits (509), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 194/375 (51%), Gaps = 45/375 (12%)

Query: 2   MRFKKGTKVEVLSKAEVPSGAWLCAEIISGNGHNYTVRYDGYHGAAGEAIEERVSRKDIR 61
           MR +KG++VEV S  E P GAW CAEI+SGNGH Y VR+  +     EA+ E+V RK IR
Sbjct: 1   MRIRKGSRVEVFSNKEAPYGAWRCAEIVSGNGHTYNVRFYSFQIEHEEAVMEKVPRKIIR 60

Query: 62  PCPPALELAESWSAGEVVEVFQNFSWKMATVLKVLGKKHLSVRLLGSSLEFQVSKFDIRV 121
           PCPP +++ E W  GE+VEV  NFSWK ATV + L   +  VRLLG+  E    K ++R 
Sbjct: 61  PCPPLVDV-ERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLGTPEELTFHKVNLRA 119

Query: 122 RQSWHDDKWIVVGKGSASCEYGKRSSALCQKTATNTKLSVSNYYQPEKKELN------VT 175
           R+SW D++W+ +GK S S            K++T T   V    QP +  +       V+
Sbjct: 120 RKSWQDERWVAIGKISGSL-----------KSSTLTGSDVHQKLQPHRNSMPLHEPSVVS 168

Query: 176 FKTLKR----GIDSQVEACAQPPPKFRAIENEGRCQVARVGNPPTPLTQVQGVSF-PRDV 230
            + LKR          E+C   P K R++E EG+ Q            +V  +S  P + 
Sbjct: 169 ARLLKRPSPYNWSECAESCTGNPKKMRSLEKEGQQQ------------KVDAISCRPENR 216

Query: 231 LAEECRPASINRRKTGISNMDIERRIQTGAVGCSFGESFGSNH-ADSVTCSVGSCSINSR 289
             +    AS+N  KTG   +     ++  + G  F ES  ++  +DS  CSVGSCS  S 
Sbjct: 217 GGKSHVQASLNNHKTGYCQI-----VRVRSKG--FSESVRADDCSDSDVCSVGSCSATSY 269

Query: 290 NSHKLQFPVSAGPFEDVDSDSFSDAESVCQRGYEEGSCSPPSQEELVEEIHRLELHAYRC 349
           +   +   +  G  +  DS S SDAES C  G EE      S  +      R EL++YR 
Sbjct: 270 DESNMPPCMLDGSTQQADSCS-SDAESSCGLG-EEPRWKHSSVGDGARNSCRSELYSYRS 327

Query: 350 TIELLHASGPISWEQ 364
           T+  L +SGP+SWEQ
Sbjct: 328 TLGELFSSGPLSWEQ 342


>AT4G32440.2 | Symbols:  | Plant Tudor-like RNA-binding protein |
           chr4:15657295-15659354 FORWARD LENGTH=393
          Length = 393

 Score =  200 bits (509), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 194/375 (51%), Gaps = 45/375 (12%)

Query: 2   MRFKKGTKVEVLSKAEVPSGAWLCAEIISGNGHNYTVRYDGYHGAAGEAIEERVSRKDIR 61
           MR +KG++VEV S  E P GAW CAEI+SGNGH Y VR+  +     EA+ E+V RK IR
Sbjct: 1   MRIRKGSRVEVFSNKEAPYGAWRCAEIVSGNGHTYNVRFYSFQIEHEEAVMEKVPRKIIR 60

Query: 62  PCPPALELAESWSAGEVVEVFQNFSWKMATVLKVLGKKHLSVRLLGSSLEFQVSKFDIRV 121
           PCPP +++ E W  GE+VEV  NFSWK ATV + L   +  VRLLG+  E    K ++R 
Sbjct: 61  PCPPLVDV-ERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLGTPEELTFHKVNLRA 119

Query: 122 RQSWHDDKWIVVGKGSASCEYGKRSSALCQKTATNTKLSVSNYYQPEKKELN------VT 175
           R+SW D++W+ +GK S S            K++T T   V    QP +  +       V+
Sbjct: 120 RKSWQDERWVAIGKISGSL-----------KSSTLTGSDVHQKLQPHRNSMPLHEPSVVS 168

Query: 176 FKTLKR----GIDSQVEACAQPPPKFRAIENEGRCQVARVGNPPTPLTQVQGVSF-PRDV 230
            + LKR          E+C   P K R++E EG+ Q            +V  +S  P + 
Sbjct: 169 ARLLKRPSPYNWSECAESCTGNPKKMRSLEKEGQQQ------------KVDAISCRPENR 216

Query: 231 LAEECRPASINRRKTGISNMDIERRIQTGAVGCSFGESFGSNH-ADSVTCSVGSCSINSR 289
             +    AS+N  KTG   +     ++  + G  F ES  ++  +DS  CSVGSCS  S 
Sbjct: 217 GGKSHVQASLNNHKTGYCQI-----VRVRSKG--FSESVRADDCSDSDVCSVGSCSATSY 269

Query: 290 NSHKLQFPVSAGPFEDVDSDSFSDAESVCQRGYEEGSCSPPSQEELVEEIHRLELHAYRC 349
           +   +   +  G  +  DS S SDAES C  G EE      S  +      R EL++YR 
Sbjct: 270 DESNMPPCMLDGSTQQADSCS-SDAESSCGLG-EEPRWKHSSVGDGARNSCRSELYSYRS 327

Query: 350 TIELLHASGPISWEQ 364
           T+  L +SGP+SWEQ
Sbjct: 328 TLGELFSSGPLSWEQ 342


>AT5G20030.1 | Symbols:  | Plant Tudor-like RNA-binding protein |
           chr5:6764971-6766036 REVERSE LENGTH=326
          Length = 326

 Score =  194 bits (492), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 183/370 (49%), Gaps = 86/370 (23%)

Query: 2   MRFKKGTKVEVLSKAEVPSGAWLCAEIISGNGHNYTVRYDGYHGAAGEAIEERVSRKDIR 61
           MRF KGTKVEVLSK+ VPSGAW  AEIISGNGH YTV YD   G       ERV RK +R
Sbjct: 1   MRFNKGTKVEVLSKSSVPSGAWRSAEIISGNGHYYTVMYDHNDGT------ERVPRKSMR 54

Query: 62  PCPPALELAESWSAGEVVEVFQNFSWKMATVLKVLGKKHLSVRLLGSSLEFQVSKFDIRV 121
           P PP L++ ++W  G+++EVFQ+ SWKMA V KVLG     VRLLGSSL+F+V+K DIRV
Sbjct: 55  PEPPRLQVLDAWCPGDILEVFQSCSWKMAIVSKVLGNGCFLVRLLGSSLKFKVTKSDIRV 114

Query: 122 RQSWHDDKWIVVGKGSASCEYGKRSSALCQKTATNTKLSVSNYYQPEKKELNVTFKTLKR 181
           RQSW D++WI++         G+ +S L  +T+T                       L+R
Sbjct: 115 RQSWQDNEWIMI---------GQGTSRLSAQTSTGE---------------------LRR 144

Query: 182 GIDSQVEACAQPPPKFRAIENEGRCQVARVGNPPTPLTQVQGVSFPRDVLAEECRPASIN 241
            ++          PK   I +E +                       D L E   P S+ 
Sbjct: 145 KVN----------PKGDYISSESK-----------------------DKLDESDVPLSVG 171

Query: 242 RRKTGISNMDIERRIQTGAVGC-----SFGESFGSNHADSVTCSVGSCSINSRNSHKLQF 296
            +K   S   +E   QT A+                  +SV  SVGSC +++     + F
Sbjct: 172 LKKRTYSL--VEPHNQTRALAAYPPRFREEVKEEEEDRESVASSVGSCCMDTDGLSAVSF 229

Query: 297 -PVSAGPFEDVDSDSFSDAESVCQRGYEEGSCSPPSQEELVEEIHRLELHAYRCTIELLH 355
            P+  G   D +S S       C  G  +    P    E   ++HRLEL AYR +IE LH
Sbjct: 230 NPIETGNSSDTESSS-------CGYGKVKKLVVPRKGSE-AADVHRLELDAYRSSIERLH 281

Query: 356 ASGP-ISWEQ 364
           ASGP I+WEQ
Sbjct: 282 ASGPIITWEQ 291


>AT4G32440.3 | Symbols:  | Plant Tudor-like RNA-binding protein |
           chr4:15657295-15658573 FORWARD LENGTH=296
          Length = 296

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 147/299 (49%), Gaps = 56/299 (18%)

Query: 2   MRFKKGTKVEVLSKAEVPSGAWLCAEIISGNGHNYTVRYDGYHGAAGEAIEERVSRKDIR 61
           MR +KG++VEV S  E P GAW CAEI+SGNGH Y VR+  +     EA+ E+V RK IR
Sbjct: 1   MRIRKGSRVEVFSNKEAPYGAWRCAEIVSGNGHTYNVRFYSFQIEHEEAVMEKVPRKIIR 60

Query: 62  PCPPALELAESWSAGEVVEVFQNFSWKMATVLKVLGKKHLSVRLLGSSLEFQVSKFDIRV 121
           PCPP +++ E W  GE+VEV  NFSWK ATV + L   +  VRLLG+  E    K ++R 
Sbjct: 61  PCPPLVDV-ERWDTGELVEVLDNFSWKAATVREELSGHYYVVRLLGTPEELTFHKVNLRA 119

Query: 122 RQSWHDDKWIVVGKGSASCEYGKRSSALCQKTATNTKLSVSNYYQPEKKELN------VT 175
           R+SW D++W+ +GK S S            K++T T   V    QP +  +       V+
Sbjct: 120 RKSWQDERWVAIGKISGSL-----------KSSTLTGSDVHQKLQPHRNSMPLHEPSVVS 168

Query: 176 FKTLKR----GIDSQVEACAQPPPKFRAIENEGRCQVARVGNPPTPLTQVQGVSFPRDVL 231
            + LKR          E+C   P K R++E EG+ Q            +V  +S      
Sbjct: 169 ARLLKRPSPYNWSECAESCTGNPKKMRSLEKEGQQQ------------KVDAIS------ 210

Query: 232 AEECRP----------ASINRRKTG---ISNMDIERRIQTGAVGCSFGESFGSNHADSV 277
              CRP          AS+N  KTG   I  M +  R    A   +   ++G N   ++
Sbjct: 211 ---CRPENRGGKSHVQASLNNHKTGYCQIVRMALLNRQTHVAAMLNLLVAWGKNQGGNI 266


>AT2G25590.1 | Symbols:  | Plant Tudor-like protein |
           chr2:10891295-10893772 FORWARD LENGTH=381
          Length = 381

 Score =  151 bits (382), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 76/149 (51%), Positives = 99/149 (66%), Gaps = 4/149 (2%)

Query: 2   MRFKKGTKVEVLSKAEVPSGAWLCAEIISGNGHNYTVRYDGYHGAAGEAIEERVSRKDIR 61
           MRF++G++VEV S  E   G W  AEIISGNGH Y VRY  +  A  E +E+RV RK IR
Sbjct: 1   MRFRRGSRVEVFSIKEASYGVWRSAEIISGNGHTYNVRYYSFEIANNEVVEDRVPRKIIR 60

Query: 62  PCPPALELAESWSAGEVVEVF-QNFSWKMATVLKVLGKKHLSVRLLGSSLEFQVSKFDIR 120
           PCPP +++ + W AGE+VEV   N SWK ATVL+VL  ++  VRLLG+  E  V K  +R
Sbjct: 61  PCPPQVDV-DRWEAGELVEVLDNNISWKTATVLEVLSGRYYVVRLLGAKAELTVHKVYLR 119

Query: 121 VRQSWHDDKWIVVGKGS--ASCEYGKRSS 147
            RQSW D++W+++GK +  AS    KR S
Sbjct: 120 ARQSWQDERWVMIGKETSVASLRVLKRPS 148


>AT3G06520.1 | Symbols:  | agenet domain-containing protein |
           chr3:2020284-2021955 FORWARD LENGTH=466
          Length = 466

 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 6/139 (4%)

Query: 3   RFKKGTKVEVLSKAEVPSGAWLCAEIISGNGHN-YTVRYDGYHGAAGEAIEER--VSRKD 59
           +++KG  VEV S+ +   G+W CA I+   G + Y V +  +    GE+I  R  V  KD
Sbjct: 168 QYEKGALVEVRSEEKAYKGSWYCARILCLLGDDKYIVEHLKFSRDDGESIPLRDVVEAKD 227

Query: 60  IRPCPPA-LELAESWSAGEVVEVFQNFSWKMATVLKVL--GKKHLSVRLLGSSLEFQVSK 116
           IRP PP+ L     +  G +V+ + N  W  + V KVL  G    SV ++ +  E  +  
Sbjct: 228 IRPVPPSELSPVVCYEPGVIVDAWFNKRWWTSRVSKVLGGGSNKYSVFIISTGEETTILN 287

Query: 117 FDIRVRQSWHDDKWIVVGK 135
           F++R  + W + +W++  K
Sbjct: 288 FNLRPHKDWINGQWVIPSK 306


>AT1G09320.1 | Symbols:  | agenet domain-containing protein |
           chr1:3010270-3012228 REVERSE LENGTH=517
          Length = 517

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 2/130 (1%)

Query: 4   FKKGTKVEVLSKAEVPSGAWLCAEIISGNGHNY-TVRYDGYHGAAG-EAIEERVSRKDIR 61
           F  GT +EV  + E    +W  A++I   G +   V YD      G E + E V+   IR
Sbjct: 380 FSIGTPIEVSPEEEGFEDSWFLAKLIEYRGKDKCLVEYDNLKAEDGKEPLREEVNVSRIR 439

Query: 62  PCPPALELAESWSAGEVVEVFQNFSWKMATVLKVLGKKHLSVRLLGSSLEFQVSKFDIRV 121
           P P    +   +   + V    N  W +  + KVL K    V    +    +     +R+
Sbjct: 440 PLPLESVMVSPFERHDKVNALYNDGWWVGVIRKVLAKSSYLVLFKNTQELLKFHHSQLRL 499

Query: 122 RQSWHDDKWI 131
            Q W D KWI
Sbjct: 500 HQEWIDGKWI 509



 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 10/160 (6%)

Query: 4   FKKGTKVEVLSKAEVPSGAWLCAEIISGNGHN-YTVRYDGYHGAAG-EAIEERVSRKDIR 61
           F  GT VEV S  E   G W  A+++   G + + V Y       G E ++E      IR
Sbjct: 221 FSSGTVVEVSSDEEGFQGCWFAAKVVEPVGEDKFLVEYRDLREKDGIEPLKEETDFLHIR 280

Query: 62  PCPPALELAESWSAGEVVEVFQNFSWKMATVLKVLGKKHLSVRLLGSSLEFQVSKFDIRV 121
           P PP  E  + ++ G+ +  F N  W +  V+  +    + +    S  + +  +  +R+
Sbjct: 281 PPPPRDEDID-FAVGDKINAFYNDGWWVGVVIDGMKHGTVGIYFRQSQEKMRFGRQGLRL 339

Query: 122 RQSWHDDKWIVVGKG-------SASCEYGKRSSALCQKTA 154
            + W D  W +  KG       + SC    R     +K A
Sbjct: 340 HKDWVDGTWQLPLKGGKIKREKTVSCNRNVRPKKATEKQA 379