Miyakogusa Predicted Gene

Lj4g3v1833610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1833610.1 Non Chatacterized Hit- tr|I3SJI8|I3SJI8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.45,0,FAMILY
NOT NAMED,NULL; Rab subfamily of small GTPases,Small GTPase
superfamily, Rab type; Ran (Ras-r,CUFF.49761.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20010.1 | Symbols: RAN-1, RAN1, ATRAN1 | RAS-related nuclear...   239   5e-64
AT5G55190.1 | Symbols: RAN3, ATRAN3 | RAN GTPase 3 | chr5:223922...   238   9e-64
AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear pr...   216   3e-57
AT5G55080.1 | Symbols: AtRAN4, RAN4 | ras-related nuclear protei...   145   6e-36
AT5G39620.1 | Symbols: AtRABG1, RABG1 | RAB GTPase homolog G1 | ...    49   6e-07
AT4G09720.4 | Symbols: RABG3A | RAB GTPase homolog G3A | chr4:61...    48   2e-06
AT4G09720.2 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A...    47   3e-06
AT5G59840.1 | Symbols:  | Ras-related small GTP-binding family p...    47   3e-06
AT4G09720.1 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A...    47   3e-06
AT4G09720.3 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A...    45   9e-06

>AT5G20010.1 | Symbols: RAN-1, RAN1, ATRAN1 | RAS-related nuclear
           protein-1 | chr5:6760364-6761747 FORWARD LENGTH=221
          Length = 221

 Score =  239 bits (609), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 114/129 (88%), Positives = 119/129 (92%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQP 120
           ISAKSNYNFEKPFLYLA+KLAGD  LHFVE PALAPP+V +D+  QQ NE ELL AA QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQP 211

Query: 121 LPDDDDEIF 129
           LPDDDD+IF
Sbjct: 212 LPDDDDDIF 220


>AT5G55190.1 | Symbols: RAN3, ATRAN3 | RAN GTPase 3 |
           chr5:22392285-22393957 FORWARD LENGTH=221
          Length = 221

 Score =  238 bits (606), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 112/129 (86%), Positives = 119/129 (92%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQP 120
           ISAKSNYNFEKPFLYLA+KLAGD  LHFVE PALAPP+V +DL +QQ +E EL  AA+QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP 211

Query: 121 LPDDDDEIF 129
           LPDDDD+ F
Sbjct: 212 LPDDDDDTF 220


>AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear
           protein 2 | chr5:6762817-6764381 FORWARD LENGTH=221
          Length = 221

 Score =  216 bits (551), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/129 (86%), Positives = 118/129 (91%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE
Sbjct: 92  MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQP 120
           ISAKSNYNFEKPFLYLA+KLAGD  LHFVE PALAPP+V LD+ +QQ NE +L  AA QP
Sbjct: 152 ISAKSNYNFEKPFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQP 211

Query: 121 LPDDDDEIF 129
           LPDDDD+ F
Sbjct: 212 LPDDDDDAF 220


>AT5G55080.1 | Symbols: AtRAN4, RAN4 | ras-related nuclear protein 4
           | chr5:22351576-22353058 REVERSE LENGTH=222
          Length = 222

 Score =  145 bits (366), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 90/121 (74%), Gaps = 5/121 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE 60
           MFDVTAR TY N+  W+RDL RVC+NIPIVLCGNKVDV +RQ+K K V++HRKK LQYYE
Sbjct: 92  MFDVTARHTYMNIDRWYRDLRRVCKNIPIVLCGNKVDVPSRQIKPKHVSYHRKKCLQYYE 151

Query: 61  ISAKSNYNFEKPFLYLAKKLAGDPGLHFVEMPALAPPDVVLDLTSQQMNEQELLIAANQP 120
           +SAK+N NFEKPFLYLA+++AGD  L FVE P     +  LD+ S Q+   E   A  QP
Sbjct: 152 MSAKNNCNFEKPFLYLARRIAGDAKLSFVESPEAQIDN--LDVESLQLLTVE---AGTQP 206

Query: 121 L 121
           L
Sbjct: 207 L 207


>AT5G39620.1 | Symbols: AtRABG1, RABG1 | RAB GTPase homolog G1 |
           chr5:15864166-15865782 REVERSE LENGTH=204
          Length = 204

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 10/89 (11%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKNRQ--VKAKQVT---F 50
           ++DV    T++++  WH +  +          P VL GNK DV N +  V AK++     
Sbjct: 84  VYDVNTLKTFESIDNWHDEFIKQANPETPTKFPFVLMGNKTDVNNGKPRVVAKEIADQWC 143

Query: 51  HRKKNLQYYEISAKSNYNFEKPFLYLAKK 79
             K N+ Y+E SAK+  N E+ FL +AKK
Sbjct: 144 GSKGNIVYFETSAKAKINVEEAFLEIAKK 172


>AT4G09720.4 | Symbols: RABG3A | RAB GTPase homolog G3A |
           chr4:6133101-6134959 FORWARD LENGTH=211
          Length = 211

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 15/93 (16%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENI----------PIVLCGNKVDV---KNRQVKAKQ 47
           ++DV    ++ N+ TWH +  +   NI          P ++ GNK+DV    +R V  K+
Sbjct: 87  VYDVNVLRSFDNLETWHEEFLKQAWNIGMCPSDPKTFPFIVLGNKIDVDGGSSRVVSDKK 146

Query: 48  VT--FHRKKNLQYYEISAKSNYNFEKPFLYLAK 78
                    N+ Y+E SAK ++N ++ FL +AK
Sbjct: 147 AADWCASNGNIPYFETSAKDDFNVDEAFLTIAK 179


>AT4G09720.2 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A |
           chr4:6133405-6134959 FORWARD LENGTH=172
          Length = 172

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--F 50
           ++DV    ++ N+ TWH +  +       +  P ++ GNK+DV    +R V  K+     
Sbjct: 53  VYDVNVLRSFDNLETWHEEFLKQASPSDPKTFPFIVLGNKIDVDGGSSRVVSDKKAADWC 112

Query: 51  HRKKNLQYYEISAKSNYNFEKPFLYLAK 78
               N+ Y+E SAK ++N ++ FL +AK
Sbjct: 113 ASNGNIPYFETSAKDDFNVDEAFLTIAK 140


>AT5G59840.1 | Symbols:  | Ras-related small GTP-binding family
           protein | chr5:24107450-24109049 REVERSE LENGTH=216
          Length = 216

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 4/84 (4%)

Query: 1   MFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV--KNRQV-KAKQVTFHRKKNL 56
           ++DVT   ++ N+  W R++ +   +N+  +L GNK D+    R V K+K      +  +
Sbjct: 94  VYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPKSKGQALADEYGI 153

Query: 57  QYYEISAKSNYNFEKPFLYLAKKL 80
           +++E SAK+N N E+ F  +AK +
Sbjct: 154 KFFETSAKTNLNVEEVFFSIAKDI 177


>AT4G09720.1 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A |
           chr4:6133101-6134959 FORWARD LENGTH=206
          Length = 206

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 10/88 (11%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--F 50
           ++DV    ++ N+ TWH +  +       +  P ++ GNK+DV    +R V  K+     
Sbjct: 87  VYDVNVLRSFDNLETWHEEFLKQASPSDPKTFPFIVLGNKIDVDGGSSRVVSDKKAADWC 146

Query: 51  HRKKNLQYYEISAKSNYNFEKPFLYLAK 78
               N+ Y+E SAK ++N ++ FL +AK
Sbjct: 147 ASNGNIPYFETSAKDDFNVDEAFLTIAK 174


>AT4G09720.3 | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A |
           chr4:6133101-6134959 FORWARD LENGTH=217
          Length = 217

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 21/99 (21%)

Query: 1   MFDVTARLTYKNVPTWHRDLCRVCENI----------------PIVLCGNKVDV---KNR 41
           ++DV    ++ N+ TWH +  +   NI                P ++ GNK+DV    +R
Sbjct: 87  VYDVNVLRSFDNLETWHEEFLKQAWNIGMWTIAEASPSDPKTFPFIVLGNKIDVDGGSSR 146

Query: 42  QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLAK 78
            V  K+         N+ Y+E SAK ++N ++ FL +AK
Sbjct: 147 VVSDKKAADWCASNGNIPYFETSAKDDFNVDEAFLTIAK 185