Miyakogusa Predicted Gene

Lj4g3v1833600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1833600.1 CUFF.49759.1
         (80 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   108   7e-25

>AT1G68680.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: chloroplast;
          EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16
          growth stages; Has 20 Blast hits to 20 proteins in 11
          species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
          0; Plants - 20; Viruses - 0; Other Eukaryotes - 0
          (source: NCBI BLink). | chr1:25785627-25786622 FORWARD
          LENGTH=75
          Length = 75

 Score =  108 bits (270), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/76 (71%), Positives = 63/76 (82%), Gaps = 2/76 (2%)

Query: 5  SESFDPFNQEPVVRKKNNGAPIKFLLPLIYAPVLPLIRIALRHKPVVRDRLFFAVLAGAF 64
          + S DP   +PV+ +K  GAPIKFL+PLIYAP LPLIR++LRHKPV+RDRLF  VL GAF
Sbjct: 2  ASSSDP--SKPVMERKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVLVGAF 59

Query: 65 AHGSYLVTDLYDAESK 80
          AHG YLVTD+YDAESK
Sbjct: 60 AHGFYLVTDIYDAESK 75