Miyakogusa Predicted Gene

Lj4g3v1813520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1813520.1 Non Chatacterized Hit- tr|I3T6H9|I3T6H9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,RING/U-box,NULL; The RING-variant domain is a C4HC3
zinc-fing,Zinc finger, RING-CH-type; no
descript,NODE_46722_length_892_cov_103.239914.path2.1
         (253 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11020.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   322   2e-88
AT2G22120.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   137   6e-33
AT2G22120.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   137   9e-33
AT1G50440.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   120   6e-28
AT1G50440.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   120   6e-28
AT1G50440.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   120   6e-28
AT4G32670.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    54   1e-07
AT4G34100.2 | Symbols:  | RING/U-box superfamily protein | chr4:...    50   1e-06
AT4G34100.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    50   1e-06

>AT1G11020.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:3676968-3678350 FORWARD LENGTH=321
          Length = 321

 Score =  322 bits (824), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/267 (63%), Positives = 184/267 (68%), Gaps = 15/267 (5%)

Query: 1   MKGEVQLQPP---------PIMQNXXXXXXXXXXXXXXXXXXXXAEIKDEEDVE--AGSL 49
           M+GEVQLQPP         P++ +                     EIK EED+E  A S 
Sbjct: 2   MQGEVQLQPPDSQKLSDSAPLLGDHTNSSSASPSAASVVAGNSD-EIKAEEDLENDASSA 60

Query: 50  PCCRICLESDSDP-EDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHL 108
           PCCRICLE DS+   DELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHL
Sbjct: 61  PCCRICLEDDSELLGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHL 120

Query: 109 RVESYED-NSW-RKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDGTFRNSFDDGW 166
           RVE +ED NSW RK KFRLFVARDV LVF+AVQTVIA + GFAY+MDKDG FRNSF+D W
Sbjct: 121 RVEPFEDNNSWRRKAKFRLFVARDVLLVFLAVQTVIAVMAGFAYMMDKDGEFRNSFNDDW 180

Query: 167 DRILSKHPIPFYYCIXXXXXXXXXXXXXXXXHCSSLNSNDPRMAGCQNCCYGWGILDCFP 226
           DRILSKHPIPFYYCI                HCS+LN NDPRMAGCQNCCYGWG+LDCFP
Sbjct: 181 DRILSKHPIPFYYCIGVISFFVLTGFLGIILHCSALNGNDPRMAGCQNCCYGWGVLDCFP 240

Query: 227 ASVEACXXXXXXXXXXXXXXXXXYGFL 253
           AS+EAC                 YGFL
Sbjct: 241 ASMEACFALVVVFVVIFAILGLAYGFL 267


>AT2G22120.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:9394026-9396979 FORWARD LENGTH=363
          Length = 363

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 91/145 (62%), Gaps = 15/145 (10%)

Query: 40  DEEDVEAGS---LPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAF 96
            E D+EAG       CRICLE+D     + I+PC CKGT ++VHR CLDHWR++KEGFAF
Sbjct: 20  SEIDLEAGGPGEQIQCRICLETDGR---DFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAF 76

Query: 97  SHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDG 156
           +HCTTCKA ++LRV S  D  WR +KFR FV RD+  +F+AVQ VIAA+    Y +D   
Sbjct: 77  AHCTTCKAPYYLRVHSAGDRKWRTLKFRFFVTRDILSIFLAVQLVIAALAYMVYFID--- 133

Query: 157 TFRNSFDDGWDRIL--SKHPIPFYY 179
               S+   W R +      + FYY
Sbjct: 134 ----SYQQSWLRHIWGFDSEVTFYY 154


>AT2G22120.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr2:9394026-9396768 FORWARD LENGTH=324
          Length = 324

 Score =  137 bits (344), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/145 (48%), Positives = 91/145 (62%), Gaps = 15/145 (10%)

Query: 40  DEEDVEAGS---LPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAF 96
            E D+EAG       CRICLE+D     + I+PC CKGT ++VHR CLDHWR++KEGFAF
Sbjct: 20  SEIDLEAGGPGEQIQCRICLETDGR---DFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAF 76

Query: 97  SHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMDKDG 156
           +HCTTCKA ++LRV S  D  WR +KFR FV RD+  +F+AVQ VIAA+    Y +D   
Sbjct: 77  AHCTTCKAPYYLRVHSAGDRKWRTLKFRFFVTRDILSIFLAVQLVIAALAYMVYFID--- 133

Query: 157 TFRNSFDDGWDRIL--SKHPIPFYY 179
               S+   W R +      + FYY
Sbjct: 134 ----SYQQSWLRHIWGFDSEVTFYY 154


>AT1G50440.3 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 90/145 (62%), Gaps = 12/145 (8%)

Query: 36  AEIKDEED--VEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEG 93
           AE  D+E   + +G  P CRICL  D   ED LI+PC CKGTQ+ VHRSCLD+WRS KEG
Sbjct: 46  AETDDDETTLLVSGDQPQCRICL--DVGGED-LIAPCNCKGTQKHVHRSCLDNWRSTKEG 102

Query: 94  FAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMD 153
           FAFSHCT C+A F LR     D  W +++F+L VARD   +F++VQ ++A +G   Y   
Sbjct: 103 FAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGLLVYKFY 162

Query: 154 KDGTFRNSFDDGWDRILSKHPIPFY 178
            +   R  F  G++    +HP  FY
Sbjct: 163 GE-ELREMF--GYE----EHPYGFY 180


>AT1G50440.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 90/145 (62%), Gaps = 12/145 (8%)

Query: 36  AEIKDEED--VEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEG 93
           AE  D+E   + +G  P CRICL  D   ED LI+PC CKGTQ+ VHRSCLD+WRS KEG
Sbjct: 46  AETDDDETTLLVSGDQPQCRICL--DVGGED-LIAPCNCKGTQKHVHRSCLDNWRSTKEG 102

Query: 94  FAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMD 153
           FAFSHCT C+A F LR     D  W +++F+L VARD   +F++VQ ++A +G   Y   
Sbjct: 103 FAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGLLVYKFY 162

Query: 154 KDGTFRNSFDDGWDRILSKHPIPFY 178
            +   R  F  G++    +HP  FY
Sbjct: 163 GE-ELREMF--GYE----EHPYGFY 180


>AT1G50440.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18686099-18687646 FORWARD LENGTH=250
          Length = 250

 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/145 (47%), Positives = 90/145 (62%), Gaps = 12/145 (8%)

Query: 36  AEIKDEED--VEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEG 93
           AE  D+E   + +G  P CRICL  D   ED LI+PC CKGTQ+ VHRSCLD+WRS KEG
Sbjct: 46  AETDDDETTLLVSGDQPQCRICL--DVGGED-LIAPCNCKGTQKHVHRSCLDNWRSTKEG 102

Query: 94  FAFSHCTTCKAQFHLRVESYEDNSWRKIKFRLFVARDVFLVFVAVQTVIAAIGGFAYIMD 153
           FAFSHCT C+A F LR     D  W +++F+L VARD   +F++VQ ++A +G   Y   
Sbjct: 103 FAFSHCTECRAFFKLRANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGLLVYKFY 162

Query: 154 KDGTFRNSFDDGWDRILSKHPIPFY 178
            +   R  F  G++    +HP  FY
Sbjct: 163 GE-ELREMF--GYE----EHPYGFY 180


>AT4G32670.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr4:15759527-15762847 REVERSE LENGTH=860
          Length = 860

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 5/85 (5%)

Query: 43  DVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTC 102
           D+   ++  CRIC +S  +P++ L  PC C+G+ +++H  CL  W + ++    +HC  C
Sbjct: 24  DINNKAVDICRIC-QSPEEPDNPLRHPCACRGSLKYIHSDCLFLWLNRRKR---NHCEIC 79

Query: 103 KAQFHLRVESYEDNSWRKIKFRLFV 127
           K  + + V  Y +N+  ++ +  F+
Sbjct: 80  KRSYSI-VPVYSENAPERLPWHEFL 103


>AT4G34100.2 | Symbols:  | RING/U-box superfamily protein |
           chr4:16330590-16334864 FORWARD LENGTH=1107
          Length = 1107

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 52  CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 111
           CRIC  +  D ++ L  PC C G+ +FVH+ CL  W +         C  CK  F     
Sbjct: 68  CRIC-RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPFSFS-P 122

Query: 112 SYEDNSWRKIKFRLFV 127
            Y DN+  ++ F+ FV
Sbjct: 123 VYADNAPSRLPFQEFV 138


>AT4G34100.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:16330590-16334864 FORWARD LENGTH=1108
          Length = 1108

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 52  CRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 111
           CRIC  +  D ++ L  PC C G+ +FVH+ CL  W +         C  CK  F     
Sbjct: 68  CRIC-RNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNA---RQCEVCKHPFSFS-P 122

Query: 112 SYEDNSWRKIKFRLFV 127
            Y DN+  ++ F+ FV
Sbjct: 123 VYADNAPSRLPFQEFV 138