Miyakogusa Predicted Gene
- Lj4g3v1787130.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1787130.3 Non Chatacterized Hit- tr|I1MUF8|I1MUF8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,78.84,0,HDASUPER,Histone deacetylase superfamily; HISTONE
DEACETYLASE,NULL; HISTONE DEACETYLASE,Histone deac,CUFF.49803.3
(497 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |... 514 e-146
AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |... 513 e-145
AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase... 241 7e-64
AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 | chr5:2456... 235 5e-62
AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of t... 224 1e-58
AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |... 167 2e-41
AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase... 134 2e-31
AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | h... 102 6e-22
AT3G44680.1 | Symbols: HDA9, HDA09 | histone deacetylase 9 | chr... 98 2e-20
AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |... 89 7e-18
AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone ... 89 7e-18
AT4G09784.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 58 1e-08
AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 | chr5:137701... 58 2e-08
>AT3G18520.2 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
chr3:6361605-6365399 FORWARD LENGTH=564
Length = 564
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/451 (61%), Positives = 319/451 (70%), Gaps = 11/451 (2%)
Query: 50 AKKRARVQKELTFXXX--XXXXXXXXXXXXXXXXWXXXXXXXXXXXXXTKWVCKNCTGIS 107
+ KRARV +E+TF W KW C NCT +
Sbjct: 44 SAKRARVSREMTFEDIYGADALLNDDDDEDDDCDWEPVQAPMEF----VKWCCVNCTMSN 99
Query: 108 LSHYDCCMICGEHKDSKIVSRGFFASPFAQDDDSAVVQSNAKDVSSQESAANSSTAIGFD 167
C ICGEHK+S I+ G+ ASPF +D + +++ K S+A SSTA+GFD
Sbjct: 100 PGDMVHCCICGEHKESGILRHGYLASPFFKD--TGLIEVEEK--YGGSSSATSSTAVGFD 155
Query: 168 ERMLLHEEADKKSHPHPERPDXXXXXXXXXXXXGIFPGRCYPIPAREITRKELTTVHSLE 227
ERMLLH E + K+ PHPERPD G+FPGRC PI AREIT++EL VH+ E
Sbjct: 156 ERMLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPGRCLPINAREITKQELQMVHTSE 215
Query: 228 HIDSVEVTSSLLSSYFTADTYANEHSXXXXXXXXXXXXXXXSEIVSGRVKNGFALVRPPG 287
H+D+V+ TS LL SYFT+DTYANE+S ++I +GRVKNGFALVRPPG
Sbjct: 216 HVDAVDTTSQLLYSYFTSDTYANEYSARAARLAAGLCADLATDIFTGRVKNGFALVRPPG 275
Query: 288 HHAGVRNAMGFCLHNNAAVAAMTAQISGARKVLILDWDVHHGNGTQEIFENNPSVLYISL 347
HHAGVR+AMGFCLHNNAAVAA+ AQ +GA+KVLI+DWDVHHGNGTQEIFE N SVLYISL
Sbjct: 276 HHAGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISL 335
Query: 348 HRHEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASEFAPD 407
HRHEGG FYPGTGAA EVGS G EGYCVN+PWS GGVGD DY FAFQHVVLPIAS F+PD
Sbjct: 336 HRHEGGNFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPD 395
Query: 408 FTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGISGGKLLVILEGGYNLRSISSSATA 467
F IISAGFDAARGDPLGCCDVTP GY+ MT ML + GGK+LVILEGGYNLRSIS+SATA
Sbjct: 396 FVIISAGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATA 455
Query: 468 VIKVLLGEDPGRELE-NSFPSKAGIQTVLEV 497
VIKVLLGE+P EL + PS AG+QTVL+V
Sbjct: 456 VIKVLLGENPENELPIATTPSVAGLQTVLDV 486
>AT3G18520.1 | Symbols: HDA15, ATHDA15 | histone deacetylase 15 |
chr3:6361605-6365367 FORWARD LENGTH=552
Length = 552
Score = 513 bits (1320), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/449 (61%), Positives = 318/449 (70%), Gaps = 11/449 (2%)
Query: 52 KRARVQKELTFXXX--XXXXXXXXXXXXXXXXWXXXXXXXXXXXXXTKWVCKNCTGISLS 109
KRARV +E+TF W KW C NCT +
Sbjct: 46 KRARVSREMTFEDIYGADALLNDDDDEDDDCDWEPVQAPMEF----VKWCCVNCTMSNPG 101
Query: 110 HYDCCMICGEHKDSKIVSRGFFASPFAQDDDSAVVQSNAKDVSSQESAANSSTAIGFDER 169
C ICGEHK+S I+ G+ ASPF +D + +++ K S+A SSTA+GFDER
Sbjct: 102 DMVHCCICGEHKESGILRHGYLASPFFKD--TGLIEVEEK--YGGSSSATSSTAVGFDER 157
Query: 170 MLLHEEADKKSHPHPERPDXXXXXXXXXXXXGIFPGRCYPIPAREITRKELTTVHSLEHI 229
MLLH E + K+ PHPERPD G+FPGRC PI AREIT++EL VH+ EH+
Sbjct: 158 MLLHSEFEVKAQPHPERPDRLRAIAASLATAGVFPGRCLPINAREITKQELQMVHTSEHV 217
Query: 230 DSVEVTSSLLSSYFTADTYANEHSXXXXXXXXXXXXXXXSEIVSGRVKNGFALVRPPGHH 289
D+V+ TS LL SYFT+DTYANE+S ++I +GRVKNGFALVRPPGHH
Sbjct: 218 DAVDTTSQLLYSYFTSDTYANEYSARAARLAAGLCADLATDIFTGRVKNGFALVRPPGHH 277
Query: 290 AGVRNAMGFCLHNNAAVAAMTAQISGARKVLILDWDVHHGNGTQEIFENNPSVLYISLHR 349
AGVR+AMGFCLHNNAAVAA+ AQ +GA+KVLI+DWDVHHGNGTQEIFE N SVLYISLHR
Sbjct: 278 AGVRHAMGFCLHNNAAVAALVAQAAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHR 337
Query: 350 HEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASEFAPDFT 409
HEGG FYPGTGAA EVGS G EGYCVN+PWS GGVGD DY FAFQHVVLPIAS F+PDF
Sbjct: 338 HEGGNFYPGTGAADEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIASAFSPDFV 397
Query: 410 IISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGISGGKLLVILEGGYNLRSISSSATAVI 469
IISAGFDAARGDPLGCCDVTP GY+ MT ML + GGK+LVILEGGYNLRSIS+SATAVI
Sbjct: 398 IISAGFDAARGDPLGCCDVTPAGYSRMTQMLGDLCGGKMLVILEGGYNLRSISASATAVI 457
Query: 470 KVLLGEDPGRELE-NSFPSKAGIQTVLEV 497
KVLLGE+P EL + PS AG+QTVL+V
Sbjct: 458 KVLLGENPENELPIATTPSVAGLQTVLDV 486
>AT5G61060.1 | Symbols: HDA05, HDA5, ATHDA5 | histone deacetylase 5
| chr5:24567137-24570917 REVERSE LENGTH=660
Length = 660
Score = 241 bits (616), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 180/332 (54%), Gaps = 18/332 (5%)
Query: 157 AANSSTAIG--FDERMLLHEEADKKSHPHPERPDXXXXXXXXXXXXGIFPGRCYPIPARE 214
A N +G +DE M H+ D + HP E PD G+ RC + + +
Sbjct: 20 AGNRQRKVGLIYDETMCKHDTPDGEDHP--ECPDRIRVIWEKLQLAGV-SQRCVVLGSSK 76
Query: 215 ITRKELTTVHSLEHIDSVEVTSSLLSSYF-------TADTYANEHSXXXXXXXXXXXXXX 267
K L VH+ +H++ V+ S+ Y Y N S
Sbjct: 77 AEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKL 136
Query: 268 XSEIVSGRVKNGFALVRPPGHHAGVRNAMGFCLHNNAAVAAMTAQIS----GARKVLILD 323
++ G + GFA+VRPPGHHA AMGFCL NN AVAA G +K+LI+D
Sbjct: 137 AEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVD 196
Query: 324 WDVHHGNGTQEIFENNPSVLYISLHRHEGGAFYPG--TGAAVEVGSMGAEGYCVNIPWSR 381
WDVHHGNGTQ++F +P VL+ S+HRHE G FYP G VG EG+ +N+PW +
Sbjct: 197 WDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQ 256
Query: 382 GGVGDNDYSFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLK 441
G GD DY A+ H+++P+A EF PD +SAGFDAA DPLG C VTP GY+ M L
Sbjct: 257 GRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKLM 316
Query: 442 GISGGKLLVILEGGYNLRSISSSATAVIKVLL 473
+ GK+++ LEGGYNL SI+ S+ A ++VLL
Sbjct: 317 EFAQGKIVLALEGGYNLDSIAKSSLACVQVLL 348
>AT5G61060.2 | Symbols: HDA05 | histone deacetylase 5 |
chr5:24567137-24570917 REVERSE LENGTH=664
Length = 664
Score = 235 bits (600), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 180/336 (53%), Gaps = 22/336 (6%)
Query: 157 AANSSTAIG--FDERMLLHEEADKKSHPHPERPDXXXXXXXXXXXXGIFPGRCYPIPARE 214
A N +G +DE M H+ D + HP E PD G+ RC + + +
Sbjct: 20 AGNRQRKVGLIYDETMCKHDTPDGEDHP--ECPDRIRVIWEKLQLAGV-SQRCVVLGSSK 76
Query: 215 ITRKELTTVHSLEHIDSVEVTSSLLSSYF-------TADTYANEHSXXXXXXXXXXXXXX 267
K L VH+ +H++ V+ S+ Y Y N S
Sbjct: 77 AEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLNGGSSEAAYLAAGSVVKL 136
Query: 268 XSEIVSGRVKNGFALVRPPGHHAGVRNAMGFCLHNNAAVAAMTAQIS----GARKVLILD 323
++ G + GFA+VRPPGHHA AMGFCL NN AVAA G +K+LI+D
Sbjct: 137 AEKVAEGELDCGFAIVRPPGHHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVD 196
Query: 324 WDVHHGNGTQEIFENNPSVLYISLHRHEGGAFYPG--TGAAVEVGSMGAEGYCVNIPWSR 381
WDVHHGNGTQ++F +P VL+ S+HRHE G FYP G VG EG+ +N+PW +
Sbjct: 197 WDVHHGNGTQKMFWKDPRVLFFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQ 256
Query: 382 GGVGDNDYSFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPTGYAHMTHM-- 439
G GD DY A+ H+++P+A EF PD +SAGFDAA DPLG C VTP GY+ M
Sbjct: 257 GRCGDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKVG 316
Query: 440 --LKGISGGKLLVILEGGYNLRSISSSATAVIKVLL 473
L + GK+++ LEGGYNL SI+ S+ A ++VLL
Sbjct: 317 VELMEFAQGKIVLALEGGYNLDSIAKSSLACVQVLL 352
>AT5G61070.1 | Symbols: HDA18, ATHDA18 | histone deacetylase of the
RPD3/HDA1 superfamily 18 | chr5:24571297-24574372
REVERSE LENGTH=682
Length = 682
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 178/333 (53%), Gaps = 20/333 (6%)
Query: 157 AANSSTAIG--FDERMLLHEEADKKSHPHPERPDXXXXXXXXXXXXGIFPGRCYPIPARE 214
A S +G +DE M H+ + K E PD G+ RC + +
Sbjct: 53 AGKSQRKVGLVYDETMCKHDTPNGKVDV--ECPDRIRVIWEKLQLAGV-TQRCVVLGGSK 109
Query: 215 ITRKELTTVHSLEHIDSVEVTSSL--------LSSYFTADTYANEHSXXXXXXXXXXXXX 266
K L VH+ +H++ V+ S+ ++S + Y N S
Sbjct: 110 AEDKHLKLVHTKKHVNLVKSISTKKKDSRRNKIASQLDS-IYLNGGSSEAAYLAAGSVVK 168
Query: 267 XXSEIVSGRVKNGFALVRPPGHHAGVRNAMGFCLHNNAAVAAMTAQIS----GARKVLIL 322
++ G + GFA+VRPPGHHA AMGFCL NN AVAA +K+LI+
Sbjct: 169 VAEKVAEGELDCGFAIVRPPGHHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIV 228
Query: 323 DWDVHHGNGTQEIFENNPSVLYISLHRHEGGAFYP--GTGAAVEVGSMGAEGYCVNIPWS 380
DWD+HHGNGTQ++F + VL S+HRH+ G+FYP G VG EG+ +N+PW
Sbjct: 229 DWDIHHGNGTQKMFWKDSRVLIFSVHRHDHGSFYPFGDDGDFNMVGEGPGEGFNINVPWE 288
Query: 381 RGGVGDNDYSFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPTGYAHMTHML 440
+GG GD DY + H+++P+ EF PD ++SAGFDAA GDPLG C VTP GY+ M L
Sbjct: 289 QGGCGDADYLAVWNHILIPVTKEFKPDIILLSAGFDAAIGDPLGGCCVTPYGYSVMLKKL 348
Query: 441 KGISGGKLLVILEGGYNLRSISSSATAVIKVLL 473
+ GK+++ LEGGYNL S+ S+ A ++VLL
Sbjct: 349 MEFAHGKIVLALEGGYNLESLGKSSLACVQVLL 381
>AT4G33470.1 | Symbols: hda14, ATHDA14 | histone deacetylase 14 |
chr4:16102774-16105439 REVERSE LENGTH=423
Length = 423
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 119/203 (58%), Gaps = 9/203 (4%)
Query: 279 GFALVRPPGHHAGVRNAMGFCLHNNAAVAAMTAQIS-GARKVLILDWDVHHGNGTQEIFE 337
GFAL+RPPGHHA + MGFC+ N A+AA AQ + G +++ I+D+DVHHGNGT + F
Sbjct: 192 GFALIRPPGHHAVPKGPMGFCVFGNVAIAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFT 251
Query: 338 NNPSVLYISLHRHEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVV 397
+P + ++S H+ YPGTG ++G EG +N+P GG GD F+ ++
Sbjct: 252 EDPDIFFLSTHQDGS---YPGTGKISDIGKGKGEGTTLNLPLP-GGSGDIAMRTVFEEII 307
Query: 398 LPIASEFAPDFTIISAGFDAARGDPLGCCDVTPTGYAHMT----HMLKGISGGKLLVILE 453
+P A F PD ++SAG+DA DPL T Y + + K + GG+ + LE
Sbjct: 308 VPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTATYYSLAKDIKRLAKEVCGGRCVFFLE 367
Query: 454 GGYNLRSISSSATAVIKVLLGED 476
GGYNL S+SSS + LLGED
Sbjct: 368 GGYNLESLSSSVADSFRALLGED 390
>AT1G08460.1 | Symbols: HDA08, HDA8, ATHDA8 | histone deacetylase 8
| chr1:2672527-2674469 FORWARD LENGTH=377
Length = 377
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 135/263 (51%), Gaps = 9/263 (3%)
Query: 219 ELTTVHSLEHIDS-VEVTSSLLSSYFTADTYANEHSXXXXXXXXXXXXXXXSEIVSGRVK 277
EL H+ E+I+ VE S A T+ + S I+ K
Sbjct: 74 ELLMFHTSEYIEKLVEADKSGERCEIAAGTFMSPGSWEAALLAAGTTLSAMQHILDCHGK 133
Query: 278 NGFALVRPPGHHAGVRNAMGFCLHNNAAVAAMTAQISGA-RKVLILDWDVHHGNGTQEIF 336
+ALVRPPGHH+ A G+C NNAA+A A SG+ +V ++D DVH+GNGT E F
Sbjct: 134 IAYALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSGSCSRVAVIDIDVHYGNGTAEGF 193
Query: 337 ENNPSVLYISLHRHEG--GAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQ 394
+ VL +SLH + G G+ +P G+ E+G GY +N+P G GD Y +A
Sbjct: 194 YTSDKVLTVSLHMNHGSWGSSHPQKGSIDELGEDVGLGYNLNVPLPNG-TGDRGYEYAMN 252
Query: 395 HVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGI----SGGKLLV 450
+V+P F PD ++ G D++ DP G +T GY + +++G+ S G+LL+
Sbjct: 253 ELVVPAVRRFGPDMVVLVVGQDSSAFDPNGRQSLTMNGYRRIGQIMRGVAEEHSHGRLLM 312
Query: 451 ILEGGYNLRSISSSATAVIKVLL 473
+ EGGY++ + A+++ +L
Sbjct: 313 VQEGGYHVTYAAYCLHAMLEGVL 335
>AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 |
histone deacetylase 6 | chr5:25315834-25318227 REVERSE
LENGTH=471
Length = 471
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 102/194 (52%), Gaps = 5/194 (2%)
Query: 288 HHAGVRNAMGFCLHNNAAVAAMTAQISGARKVLILDWDVHHGNGTQEIFENNPSVLYISL 347
HHA A GFC N+ V + + ++VL +D DVHHG+G +E F V+ +S
Sbjct: 152 HHAKKSEASGFCYVNDI-VLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSF 210
Query: 348 HRHEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASEFAPD 407
H+ G F+PGTG +VG+ + Y +N+P + G+ D + F+ ++ + + P+
Sbjct: 211 HKF--GDFFPGTGHIRDVGAEKGKYYALNVPLN-DGMDDESFRSLFRPLIQKVMEVYQPE 267
Query: 408 FTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGISGGKLLVILEGGYNLRSISSSATA 467
++ G D+ GD LGC +++ G+A L+ + L+V+ GGY +R+++
Sbjct: 268 AVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYN-VPLMVLGGGGYTIRNVARCWCY 326
Query: 468 VIKVLLGEDPGREL 481
V +G +P +L
Sbjct: 327 ETAVAVGVEPDNKL 340
>AT3G44680.1 | Symbols: HDA9, HDA09 | histone deacetylase 9 |
chr3:16226769-16229752 REVERSE LENGTH=426
Length = 426
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 8/205 (3%)
Query: 288 HHAGVRNAMGFCLHNNAAVAAMTAQISGARKVLILDWDVHHGNGTQEIFENNPSVLYISL 347
HHA +A GFC + N V + + +VL +D DVHHG+G +E F V+ +S
Sbjct: 136 HHAKKCDASGFC-YINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSF 194
Query: 348 HRHEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASEFAPD 407
H+ G F+PGTG E+G + Y +N+P + G+ D+ ++ F+ ++ + + P
Sbjct: 195 HKF-GDKFFPGTGDVKEIGEREGKFYAINVPL-KDGIDDSSFNRLFRTIISKVVEIYQPG 252
Query: 408 FTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGISGGKLLVILEGGYNLRSISSSATA 467
++ G D+ D LGC +++ G+A +K + LLV GGY +++ T
Sbjct: 253 AIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFN-LPLLVTGGGGYTKENVARCWTV 311
Query: 468 VIKVLLGEDPGRELENSFPSKAGIQ 492
+LL EL N P I+
Sbjct: 312 ETGILLDT----ELPNEIPENDYIK 332
>AT4G38130.1 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 |
histone deacetylase 1 | chr4:17896493-17899057 REVERSE
LENGTH=501
Length = 501
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 4/157 (2%)
Query: 288 HHAGVRNAMGFCLHNNAAVAAMTAQISGARKVLILDWDVHHGNGTQEIFENNPSVLYISL 347
HHA A GFC N+ +A + + +VL +D D+HHG+G +E F V+ +S
Sbjct: 148 HHAKKCEASGFCYVNDIVLAILEL-LKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSF 206
Query: 348 HRHEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASEFAPD 407
H+ G ++PGTG ++G + Y +N+P G+ D Y F+ ++ + F P
Sbjct: 207 HKF--GDYFPGTGHIQDIGYGSGKYYSLNVPLD-DGIDDESYHLLFKPIMGKVMEIFRPG 263
Query: 408 FTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGIS 444
++ G D+ GD LGC +++ G+A ++ +
Sbjct: 264 AVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300
>AT4G38130.2 | Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19 | histone
deacetylase 1 | chr4:17896663-17899057 REVERSE
LENGTH=469
Length = 469
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 4/157 (2%)
Query: 288 HHAGVRNAMGFCLHNNAAVAAMTAQISGARKVLILDWDVHHGNGTQEIFENNPSVLYISL 347
HHA A GFC + N V A+ + +VL +D D+HHG+G +E F V+ +S
Sbjct: 148 HHAKKCEASGFC-YVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSF 206
Query: 348 HRHEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASEFAPD 407
H+ G ++PGTG ++G + Y +N+P G+ D Y F+ ++ + F P
Sbjct: 207 HKF--GDYFPGTGHIQDIGYGSGKYYSLNVPLD-DGIDDESYHLLFKPIMGKVMEIFRPG 263
Query: 408 FTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGIS 444
++ G D+ GD LGC +++ G+A ++ +
Sbjct: 264 AVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300
>AT4G09784.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: histone deacetylase 15
(TAIR:AT3G18520.2); Has 120 Blast hits to 120 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:6162253-6162613 FORWARD
LENGTH=70
Length = 70
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 27/42 (64%)
Query: 179 KSHPHPERPDXXXXXXXXXXXXGIFPGRCYPIPAREITRKEL 220
KSHPHPERPD G+FPGRC PI A EIT++EL
Sbjct: 8 KSHPHPERPDRLRAIAASLDTAGVFPGRCLPINAGEITKQEL 49
>AT5G35600.1 | Symbols: HDA7 | histone deacetylase7 |
chr5:13770121-13771712 REVERSE LENGTH=409
Length = 409
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 288 HHAGVRNAMGFCLHNNAAVAAMTAQISGARKVLILDWDVHHGNGTQEIFENNPSVLYISL 347
HH A GF + N V A+ + ++VL ++ HG+ +E F++ V+ +S
Sbjct: 147 HHVKKDKASGFG-YVNDVVLAILELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVSF 205
Query: 348 HRHEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASE---- 403
H+ TG + G + Y +N P + G+ D F+ + + +P+
Sbjct: 206 HK------VGDTGDISDYGEGKGQYYSLNAPL-KDGLDD----FSLRGLFIPVIHRAMEI 254
Query: 404 FAPDFTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGISGGKLLVILEGGYNLRSISS 463
+ P+ ++ G D+ GDP G +++ G+ ++ + L+++ GGY L +++
Sbjct: 255 YEPEVIVLQCGADSLAGDPFGTFNLSIKGHGDCLQYVRSFN-VPLMILGGGGYTLPNVAR 313
Query: 464 SATAVIKVLLGEDPGRELENSFP 486
+ +GE +L+N P
Sbjct: 314 CWCYETAIAVGE----QLDNDLP 332