Miyakogusa Predicted Gene
- Lj4g3v1787060.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1787060.1 Non Chatacterized Hit- tr|H9VGN9|H9VGN9_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=U,64.1,2e-16,seg,NULL; RING/U-box,NULL; Tmemb_185A,Transmembrane
Fragile-X-F-associated protein; zf-C3HC4_3,NULL;,CUFF.49721.1
(464 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73950.1 | Symbols: | Transmembrane Fragile-X-F-associated p... 714 0.0
AT1G18470.1 | Symbols: | Transmembrane Fragile-X-F-associated p... 711 0.0
AT1G68820.1 | Symbols: | Transmembrane Fragile-X-F-associated p... 628 e-180
AT1G18470.2 | Symbols: | Transmembrane Fragile-X-F-associated p... 578 e-165
AT4G39050.1 | Symbols: | Kinesin motor family protein | chr4:18... 65 1e-10
AT2G21380.1 | Symbols: | Kinesin motor family protein | chr2:91... 63 5e-10
AT3G12920.1 | Symbols: | SBP (S-ribonuclease binding protein) f... 54 3e-07
AT2G35330.1 | Symbols: | RING/U-box superfamily protein | chr2:... 53 5e-07
AT2G35330.2 | Symbols: | RING/U-box superfamily protein | chr2:... 52 6e-07
>AT1G73950.1 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:27800126-27804476 REVERSE LENGTH=466
Length = 466
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/466 (73%), Positives = 384/466 (82%), Gaps = 2/466 (0%)
Query: 1 MSWRRVLKSVQXXXXXXXXXXXXXXXXXXXDHQLSSSWWTIFSPLWMFHAVVARGRFSLP 60
M+ RVLKSVQ DH ++ SWW + PLW FHAVVARGRFSLP
Sbjct: 1 MNCWRVLKSVQASVAHCFLFSFTLALVLKLDHSITYSWWVVCLPLWAFHAVVARGRFSLP 60
Query: 61 APSAPRNRHWAPCHTVVATPLLIAFELLLCIYLESLYVRGFAAVNLKIVFLPLLTFEIII 120
AP APRNRHWAPCH +V+TPLLIAFELLLC+YLE+ Y AV+LKIVFLPLL FE+II
Sbjct: 61 APIAPRNRHWAPCHAIVSTPLLIAFELLLCVYLETAYADSPPAVSLKIVFLPLLAFEVII 120
Query: 121 LIDNFRMCRALMPGDEDSMSDEAIWETLPHFWIAISMVFFIAATIFTLLKLSGDVGALGW 180
L+DN RMCRALMPGDE+S++DEA+WE LPHFW+AISMVFF+AAT+FTLLKLSGDV ALGW
Sbjct: 121 LVDNARMCRALMPGDEESVNDEAVWEALPHFWVAISMVFFLAATVFTLLKLSGDVAALGW 180
Query: 181 WDLFINFAIAECFAFLVCTKWSNPVIHRNSR--EASSSSTAIRYLDWNSGLTLSSEENRE 238
WDLFINF IAECFAFLVCTKWSNPVIHR+SR E SSST IRYLDWNSGL + SE++R
Sbjct: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSSRDRETGSSSTNIRYLDWNSGLGVFSEDDRN 240
Query: 239 GRICSLQDIGGHFMKVPVIAFQVLLCMHLEGTPARAVYLPLPVIFSPLFLLQGVAVVLSV 298
C LQDIGGH MK+P+I FQV+LCMHLEGTP A + +PV+FSPLFLLQGV V+ +
Sbjct: 241 QDTCGLQDIGGHIMKIPLIVFQVVLCMHLEGTPEAAKSISVPVLFSPLFLLQGVGVLFAA 300
Query: 299 SKFVEKLVLLLRSGAGGGIYFRVSLRAQDCLGFLHHGSRLLGWWSIDEGSREEQARLYHE 358
SK +EK+VLLLR G+YFR RA DCLGFLHHGSRLLGWWSIDEGSREE+ARLY +
Sbjct: 301 SKLIEKVVLLLRGEDDTGLYFRFLSRAHDCLGFLHHGSRLLGWWSIDEGSREEEARLYFD 360
Query: 359 GASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEIIKYSQQEYERLKNEKVLCR 418
SGYNTFCG+PPEIVKKMPKK+LAEEVWRLQAALGEQTEI K+SQQEYERL+NEKVLCR
Sbjct: 361 QESGYNTFCGHPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCR 420
Query: 419 ICFEGEISVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV 464
+CFE EISVVLLPCRHRVLC CS+KCKKCP CR +I ERLPVYDV
Sbjct: 421 VCFEREISVVLLPCRHRVLCRNCSDKCKKCPFCRITIEERLPVYDV 466
>AT1G18470.1 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:6356407-6360057 REVERSE LENGTH=467
Length = 467
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/467 (73%), Positives = 387/467 (82%), Gaps = 3/467 (0%)
Query: 1 MSWRRVLKSVQXXXXXXXXXXXXXXXXXXXDHQLSSSWWTIFSPLWMFHAVVARGRFSLP 60
MS RRVLKS+Q DH +SSSWW +F PLW FHAVVARGRFSLP
Sbjct: 1 MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60
Query: 61 APSAPRNRHWAPCHTVVATPLLIAFELLLCIYLESLYVRGFAAVNLKIVFLPLLTFEIII 120
AP APRNRHWAPCH VVATPLL+AFELLLCIYLES Y R AV+LKI FLPLL FE+ I
Sbjct: 61 APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLPLLAFELTI 120
Query: 121 LIDNFRMCRALMPGDEDSMSDEAIWETLPHFWIAISMVFFIAATIFTLLKLSGDVGALGW 180
L+DN RMCRALMPGD+DS++D+AIWE LPHFW+AISMVF +AAT FTLLKLSGDV ALGW
Sbjct: 121 LVDNLRMCRALMPGDDDSITDDAIWEALPHFWVAISMVFTLAATFFTLLKLSGDVVALGW 180
Query: 181 WDLFINFAIAECFAFLVCTKWSNPVIHRNSR--EASSSSTAIRYLDWNSGLTLSSEENR- 237
WDLFINF IAECFAFLVCTKWSNPVIHR+SR E SSST+IRYLDWNSGL ++ EE+R
Sbjct: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSSRARETGSSSTSIRYLDWNSGLVVAPEEDRH 240
Query: 238 EGRICSLQDIGGHFMKVPVIAFQVLLCMHLEGTPARAVYLPLPVIFSPLFLLQGVAVVLS 297
+ R C LQDIGGH +K+PVI FQV+LCM+LEGTP RA + +PV+FSPLFLLQG+ V+ +
Sbjct: 241 QDRWCGLQDIGGHMLKIPVILFQVVLCMYLEGTPERAKDISIPVLFSPLFLLQGLGVLFA 300
Query: 298 VSKFVEKLVLLLRSGAGGGIYFRVSLRAQDCLGFLHHGSRLLGWWSIDEGSREEQARLYH 357
SK +EK+VLLLR AG G+YFR S A DCLGFLHHGSRLLGWWSIDEGSREEQARLY
Sbjct: 301 ASKLLEKIVLLLRGEAGPGLYFRFSSSAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYF 360
Query: 358 EGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEIIKYSQQEYERLKNEKVLC 417
+ SGYNTF G+PPEIVKKMPK+DLAEEVWRLQAALGEQTEI K+SQQEYERL+NEKVLC
Sbjct: 361 DQESGYNTFSGHPPEIVKKMPKEDLAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLC 420
Query: 418 RICFEGEISVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV 464
R+CFE +IS+VLLPCRHRVLC TC++KC CPICR I +RL VYDV
Sbjct: 421 RVCFEKDISLVLLPCRHRVLCRTCADKCTTCPICRIDIEKRLSVYDV 467
>AT1G68820.1 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:25865852-25868800 FORWARD LENGTH=468
Length = 468
Score = 628 bits (1619), Expect = e-180, Method: Compositional matrix adjust.
Identities = 315/469 (67%), Positives = 361/469 (76%), Gaps = 13/469 (2%)
Query: 1 MSWRRVLKSVQXXXXXXXXXXXXXXXXXXXDHQLSSSWWTIFSPLWMFHAVVARGRFSLP 60
MSWRRV KS Q DH +S SWW +F+PLW+FHAV+ARGRFSLP
Sbjct: 8 MSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSWWFVFAPLWLFHAVIARGRFSLP 67
Query: 61 APSAPRNRHWAPCHTVVATPLLIAFELLLCIYLESLYVRGFAAVNLKIVFLPLLTFEIII 120
APS P +RHWAP H+V+ATPLL+AFE+LLC++LE YV V+LKIVFLPLL FE+ I
Sbjct: 68 APSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYV-----VDLKIVFLPLLAFEVAI 122
Query: 121 LIDNFRMCRALMPGDEDSMSDEAIWETLPHFWIAISMVFFIAATIFTLLKLSGDVGALGW 180
LIDN RMCR LMPGDE++MSDEAIWETLPHFW++ISMVFFIAAT FTLLKL GDV ALGW
Sbjct: 123 LIDNVRMCRTLMPGDEETMSDEAIWETLPHFWVSISMVFFIAATTFTLLKLCGDVAALGW 182
Query: 181 WDLFINFAIAECFAFLVCTKWSNPVIHRNSR--EASSSSTAIRYLDWNSGL--TLSSEEN 236
WDLFINF IAECFAFLVCTKWSN IHR S E SSSS +RYLDWN GL T E
Sbjct: 183 WDLFINFGIAECFAFLVCTKWSNQSIHRYSHIPEPSSSSMVVRYLDWNRGLVVTADDEHQ 242
Query: 237 REGRICSLQDIGGHFMKVPVIAFQVLLCMHLEGTPARAVYLPLPVIFSPLFLLQGVAVVL 296
+ RIC LQDIGGH MK+P + FQ++L M LEGTPA A +P+ V+F PLFLLQG V+
Sbjct: 243 QSNRICGLQDIGGHVMKIPFVTFQIILFMRLEGTPASAKNIPILVLFVPLFLLQGAGVLF 302
Query: 297 SVSKFVEKLVLLLRSGAGG-GIYFRVSLRAQDCLGFLHHGSRLLGWWSIDEGSREEQARL 355
++ + VEK VLL+ SG+G G YF + A++ LGF HG+RLLGWWSIDEGSREEQARL
Sbjct: 303 AMYRLVEKSVLLINSGSGSYGRYFTATSSAREFLGFFQHGARLLGWWSIDEGSREEQARL 362
Query: 356 YHEGASGYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEIIKYSQQEYERLKNEKV 415
Y A+GYNTF PE+VKKMPK DL EE+WRLQAAL EQT+I YSQQEYERL+NEK+
Sbjct: 363 YSGEATGYNTF---SPEVVKKMPKSDLVEEIWRLQAALSEQTDITSYSQQEYERLQNEKI 419
Query: 416 LCRICFEGEISVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV 464
LCR+CFE I+VVLLPCRH VLCSTC EKCKKCPICR I ER+PVYDV
Sbjct: 420 LCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVLIEERMPVYDV 468
>AT1G18470.2 | Symbols: | Transmembrane Fragile-X-F-associated
protein | chr1:6356972-6360057 REVERSE LENGTH=423
Length = 423
Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust.
Identities = 283/389 (72%), Positives = 318/389 (81%), Gaps = 3/389 (0%)
Query: 1 MSWRRVLKSVQXXXXXXXXXXXXXXXXXXXDHQLSSSWWTIFSPLWMFHAVVARGRFSLP 60
MS RRVLKS+Q DH +SSSWW +F PLW FHAVVARGRFSLP
Sbjct: 1 MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60
Query: 61 APSAPRNRHWAPCHTVVATPLLIAFELLLCIYLESLYVRGFAAVNLKIVFLPLLTFEIII 120
AP APRNRHWAPCH VVATPLL+AFELLLCIYLES Y R AV+LKI FLPLL FE+ I
Sbjct: 61 APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLPLLAFELTI 120
Query: 121 LIDNFRMCRALMPGDEDSMSDEAIWETLPHFWIAISMVFFIAATIFTLLKLSGDVGALGW 180
L+DN RMCRALMPGD+DS++D+AIWE LPHFW+AISMVF +AAT FTLLKLSGDV ALGW
Sbjct: 121 LVDNLRMCRALMPGDDDSITDDAIWEALPHFWVAISMVFTLAATFFTLLKLSGDVVALGW 180
Query: 181 WDLFINFAIAECFAFLVCTKWSNPVIHRNS--REASSSSTAIRYLDWNSGLTLSSEENR- 237
WDLFINF IAECFAFLVCTKWSNPVIHR+S RE SSST+IRYLDWNSGL ++ EE+R
Sbjct: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSSRARETGSSSTSIRYLDWNSGLVVAPEEDRH 240
Query: 238 EGRICSLQDIGGHFMKVPVIAFQVLLCMHLEGTPARAVYLPLPVIFSPLFLLQGVAVVLS 297
+ R C LQDIGGH +K+PVI FQV+LCM+LEGTP RA + +PV+FSPLFLLQG+ V+ +
Sbjct: 241 QDRWCGLQDIGGHMLKIPVILFQVVLCMYLEGTPERAKDISIPVLFSPLFLLQGLGVLFA 300
Query: 298 VSKFVEKLVLLLRSGAGGGIYFRVSLRAQDCLGFLHHGSRLLGWWSIDEGSREEQARLYH 357
SK +EK+VLLLR AG G+YFR S A DCLGFLHHGSRLLGWWSIDEGSREEQARLY
Sbjct: 301 ASKLLEKIVLLLRGEAGPGLYFRFSSSAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYF 360
Query: 358 EGASGYNTFCGYPPEIVKKMPKKDLAEEV 386
+ SGYNTF G+PPEIVKKMPK+DLAEEV
Sbjct: 361 DQESGYNTFSGHPPEIVKKMPKEDLAEEV 389
>AT4G39050.1 | Symbols: | Kinesin motor family protein |
chr4:18193462-18200148 FORWARD LENGTH=1055
Length = 1055
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 371 PEIV-----KKMPKKDLAEEVWRLQAALGEQTEIIKYSQQEYERLKNEKVLCRICFEGEI 425
PE+V ++ PK++ V RL+A + E E SQ + + +C++CFE
Sbjct: 962 PEVVVVAKTEETPKEEPL--VARLKARMQEMKEKEMKSQANGDANSH---ICKVCFESPT 1016
Query: 426 SVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERL 459
+ +LLPCRH LC +CS C +CPICR I++RL
Sbjct: 1017 AAILLPCRHFCLCKSCSLACSECPICRTKISDRL 1050
>AT2G21380.1 | Symbols: | Kinesin motor family protein |
chr2:9141833-9148883 FORWARD LENGTH=1058
Length = 1058
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 416 LCRICFEGEISVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERL 459
+C++CFE + +LLPCRH LC +CS C +CPICR I++RL
Sbjct: 1010 ICKVCFESPTATILLPCRHFCLCKSCSLACSECPICRTKISDRL 1053
>AT3G12920.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr3:4122127-4123323 REVERSE LENGTH=335
Length = 335
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 381 DLAEEVWRLQAALGEQTEIIKYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCST 440
D EE W+L + ++ + +CR C +GE SV+LLPCRH LCS
Sbjct: 261 DSEEERWKLAGEAQDTKKMCRVGMS----------MCRSCGKGEASVLLLPCRHMCLCSV 310
Query: 441 CSEKCKKCPICR 452
C CPIC+
Sbjct: 311 CGSSLNTCPICK 322
>AT2G35330.1 | Symbols: | RING/U-box superfamily protein |
chr2:14869179-14871673 FORWARD LENGTH=738
Length = 738
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 407 YERLKNEKVLCRICFEGEISVVLLPCRHRVLCSTCSEK-----CKKCPICRDSIAERLPV 461
YE+ N C IC + E+SVV LPC H+V+C++CS+ CP CR + +R+ V
Sbjct: 674 YEKEANYDRECLICMKDEVSVVFLPCAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRV 733
Query: 462 Y 462
+
Sbjct: 734 F 734
>AT2G35330.2 | Symbols: | RING/U-box superfamily protein |
chr2:14869260-14871673 FORWARD LENGTH=711
Length = 711
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 407 YERLKNEKVLCRICFEGEISVVLLPCRHRVLCSTCSEK-----CKKCPICRDSIAERLPV 461
YE+ N C IC + E+SVV LPC H+V+C++CS+ CP CR + +R+ V
Sbjct: 647 YEKEANYDRECLICMKDEVSVVFLPCAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRV 706
Query: 462 Y 462
+
Sbjct: 707 F 707