Miyakogusa Predicted Gene
- Lj4g3v1787050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1787050.1 Non Chatacterized Hit- tr|I1MUG2|I1MUG2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38175 PE,91.4,0,MUTS
HOMOLOG 2, MSH2,NULL; DNA MISMATCH REPAIR MUTS RELATED PROTEINS,NULL;
DNA repair protein MutS, ,CUFF.49716.1
(940 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 | chr3:6368... 1446 0.0
AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch re... 189 9e-48
AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4... 187 3e-47
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c... 185 2e-46
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 184 2e-46
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 184 2e-46
AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:71... 174 3e-43
AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type... 91 4e-18
AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ho... 87 4e-17
AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type... 60 6e-09
AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type... 60 7e-09
>AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 |
chr3:6368151-6372409 REVERSE LENGTH=937
Length = 937
Score = 1446 bits (3744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 691/940 (73%), Positives = 812/940 (86%), Gaps = 6/940 (0%)
Query: 3 ENNFED--KLPELKLDSKQAQGFLSFFKTLTDDSRAIRFFDRRDYYTAHGENANFIAKTY 60
E NFE+ KLPELKLD+KQAQGFLSF+KTL +D+RA+RFFDR+DYYTAHGEN+ FIAKTY
Sbjct: 2 EGNFEEQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTY 61
Query: 61 YHTTTALRQLGSGLDALSSVSVSRNMFETIARDLLLERTDHTLEVYEGSGSNWRLVKSGT 120
YHTTTALRQLGSG +ALSSVS+SRNMFETIARDLLLER DHT+E+YEGSGSNWRLVK+G+
Sbjct: 62 YHTTTALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGSGSNWRLVKTGS 121
Query: 121 PGNIGNFEDVLFANSEMQDSPVIVALSLNFRENGCTIGLGFVDLTKRVLGMAEFLDDSHF 180
PGNIG+FEDVLFAN+EMQD+PV+V++ +F + C IG+ +VDLT+RVLG+AEFLDDS F
Sbjct: 122 PGNIGSFEDVLFANNEMQDTPVVVSIFPSFHDGRCVIGMAYVDLTRRVLGLAEFLDDSRF 181
Query: 181 TNVESALVALGCKECLVPIESGKSTENRMLCDVLTKCGAMLTERKKSEFKTRDLVQDLGR 240
TN+ES+L+ALG KEC+ P ESGKS E + L D L +C M+TERKK EFK RDL DL R
Sbjct: 182 TNLESSLIALGAKECIFPAESGKSNECKSLYDSLERCAVMITERKKHEFKGRDLDSDLKR 241
Query: 241 LLKGSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYENFTLRRYNLDSYVRLDSAAM 300
L+KG+IEPVRDLVSGF+ A ALGALLS++ELL++E NY NFT+RRY++ ++RLDSAAM
Sbjct: 242 LVKGNIEPVRDLVSGFDLATPALGALLSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAM 301
Query: 301 RALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHNWLKQPLLDVKEINSRLDVVQAFV 360
RALNV+ESKTDANKNFSLFGLMNRTCTAGMGKRLLH WLKQPL+D+ EI +RLD+VQ FV
Sbjct: 302 RALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFV 361
Query: 361 EDPVLRQELRQHLKRISDIERLVHNLQKRRAGLQHIVKLYQSSIRLPYIKSTLEAYDGQF 420
E+ LRQ+LRQHLKRISD+ERL+ +L++RR GLQHI+KLYQS+IRLP+IK+ ++ Y G+F
Sbjct: 362 EEAGLRQDLRQHLKRISDVERLLRSLERRRGGLQHIIKLYQSTIRLPFIKTAMQQYTGEF 421
Query: 421 SSMMKSRYLEPLQLWTDDDHLNKFIGLVEASVDLDQLENREYMIAPSYDAXXXXXXXXXX 480
+S++ RYL+ L+ +D DHL KFI LVE SVDLDQLEN EYMI+ SYD
Sbjct: 422 ASLISERYLKKLEALSDQDHLGKFIDLVECSVDLDQLENGEYMISSSYDTKLASLKDQKE 481
Query: 481 XXXSQIQNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLET 540
QI LH++TA +LDL +DKALKLDK QFGHVFRITKKEEPKIRKKL TQFIVLET
Sbjct: 482 LLEQQIHELHKKTAIELDLQVDKALKLDKAAQFGHVFRITKKEEPKIRKKLTTQFIVLET 541
Query: 541 RKDGVKFTNTKLKKLGDQYQQILEEYKSCQKELVNRVVQTAATFSEVFESLAELISELDV 600
RKDGVKFTNTKLKKLGDQYQ ++++Y+SCQKELV+RVV+T +FSEVFE LA L+SE+DV
Sbjct: 542 RKDGVKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSEVFEDLAGLLSEMDV 601
Query: 601 LLSFADLASSCPTPYTRPDITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRRKSWF 660
LLSFADLA+SCPTPY RP+ITSSD GDI+LEGSRHPCVEAQDWVNFIPNDC+L+R KSWF
Sbjct: 602 LLSFADLAASCPTPYCRPEITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWF 661
Query: 661 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVST 720
QI+TGPNMGGKSTFIRQVGV +LMAQVGSFVPCDKASIS+RDCIFARVGAGDCQLRGVST
Sbjct: 662 QIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVST 721
Query: 721 FMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHF 780
FMQEMLETASILKGA+DKSLIIIDELGRGTSTYDGFGLAWAICEH+V+V +APTLFATHF
Sbjct: 722 FMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHF 781
Query: 781 HELTALALENVSDDPHKQIVGVANYHVSAHIDESTRKLTMLYKVEPGACDQSFGIHVAEF 840
HELTALA N + VGVAN+HVSAHID +RKLTMLYKVEPGACDQSFGIHVAEF
Sbjct: 782 HELTALAQAN--SEVSGNTVGVANFHVSAHIDTESRKLTMLYKVEPGACDQSFGIHVAEF 839
Query: 841 ANFPESVVALAREKAAELEDFSPSAISLIDTTEQAGSKRKRVFESDDMSQGVAKARQILE 900
ANFPESVVALAREKAAELEDFSPS S+I E++G ++ R + D++S+G +A + L+
Sbjct: 840 ANFPESVVALAREKAAELEDFSPS--SMIINNEESGKRKSREDDPDEVSRGAERAHKFLK 897
Query: 901 AFVALPLETMDKSQALQEVSKLKDTLEKDAENCHWLQKFL 940
F A+PL+ M+ +LQ V ++KD LEKDA +CHWL++FL
Sbjct: 898 EFAAIPLDKMELKDSLQRVREMKDELEKDAADCHWLRQFL 937
>AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair
protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081
Length = 1081
Score = 189 bits (480), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 189/358 (52%), Gaps = 17/358 (4%)
Query: 509 KGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDQYQQILEEYKS 568
+ +F V IT E + K+ ++ + + K +++ ++ D+ E
Sbjct: 662 RNLEFLQVSGITHLIELPVDSKVPMNWVKVNSTKKTIRYHPPEIVAGLDELALATEHLAI 721
Query: 569 CQKELVNRVVQTAATFSEVFESLAELISELDVLLSFADLASSCPTPYTRPDITSSDEG-D 627
+ + +++ + + F++ + ++ LD L S + L+ + Y RP+ E +
Sbjct: 722 VNRASWDSFLKSFSRYYTDFKAAVQALAALDCLHSLSTLSRN--KNYVRPEFVDDCEPVE 779
Query: 628 IILEGSRHPCVEAQDWVNFIPNDCKLIRRKSWFQIITGPNMGGKSTFIRQVGVNILMAQV 687
I ++ RHP +E NF+PND L + QIITGPNMGGKS +IRQV + +MAQV
Sbjct: 780 INIQSGRHPVLETILQDNFVPNDTILHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQV 839
Query: 688 GSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELG 747
GSFVP A + V D +F R+GA D G STF++E+ E + I++ + +SL+I+DELG
Sbjct: 840 GSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELG 899
Query: 748 RGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSDDPHKQIVGVANYHV 807
RGTST+DG +A+A +H++ + LF TH+ E+ ++ + P V YHV
Sbjct: 900 RGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIAEIS----NGFPG----SVGTYHV 951
Query: 808 SAHIDESTR------KLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELE 859
S + + +T LYK+ G C +SFG VA+ A P S + A AA+LE
Sbjct: 952 SYLTLQKDKGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAAKLE 1009
>AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 |
chr4:9708742-9714068 FORWARD LENGTH=792
Length = 792
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 166/600 (27%), Positives = 293/600 (48%), Gaps = 73/600 (12%)
Query: 292 YVRLDSAAMRALNVLESKTDA-----NKNFSLFGLMNRTCTAGMGKRLLHNWLKQPLLDV 346
++ +D+ ++ L +++ +A NK SLF + T TAG G RLL L QPL D+
Sbjct: 164 HMNIDATSVENLELIDPFHNALLGTSNKKRSLFQMFKTTKTAG-GTRLLRANLLQPLKDI 222
Query: 347 KEINSRLDVVQAFVEDPVLRQELRQHLKRI-SDIERLV-----------------HNLQK 388
+ IN+RLD + + + L L Q L++ + +R++ N +K
Sbjct: 223 ETINTRLDCLDELMSNEQLFFGLSQVLRKFPKETDRVLCHFCFKPKKVTEAVIGFENTRK 282
Query: 389 RRAGLQHIVKLYQSSIRLPYIKSTL-EAYDGQFSSMMKS-----RYL---EPLQLWTDDD 439
+ + I+ L + LP + L +A +++ KS RY + + DDD
Sbjct: 283 SQNMISSIILLKTALDALPILAKVLKDAKCFLLANVYKSVCENDRYASIRKKIGEVIDDD 342
Query: 440 HLNKFIGLVEASVDLDQLENREYMIAPSYDAXXXXXXXXXXXXXSQIQNLHRQTADDLDL 499
L+ + V + + + + D I NL + ++ +L
Sbjct: 343 VLHARVPFVART-------QQCFALKAGIDGFLDIARRTFCDTSEAIHNLASKYREEFNL 395
Query: 500 PIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDQY 559
P LKL + G FRI +KE ++ KL +F + + ++ +L L +
Sbjct: 396 P---NLKLPFNNRQGFFFRIPQKE---VQGKLPNKFTQVVKHGKNIHCSSLELASLNVRN 449
Query: 560 QQILEE----YKSCQKELVNRVVQTAATFSEVFESLAELISELDVLL-SFADLASSCPTP 614
+ E ++C + L++ + + + + LAE++ LD+++ SFA S+ P
Sbjct: 450 KSAAGECFIRTETCLEALMDAIREDISALT----LLAEVLCLLDMIVNSFAHTISTKPVD 505
Query: 615 -YTRPDITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRRKSWFQIITGPNMGGKST 673
Y+RP++T D G + ++ RHP +E+ +F+ N + + ++ GPNM GKST
Sbjct: 506 RYSRPELT--DSGPLAIDAGRHPILESIHN-DFVSNSI-FMSEATNMLVVMGPNMSGKST 561
Query: 674 FIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 733
+++QV + +++AQ+G +VP A+I V D IF R+G D STFM EM ETA I++
Sbjct: 562 YLQQVCLVVILAQIGCYVPARFATIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQ 621
Query: 734 GATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSD 793
T++SLI++DELGR TS+ DG +AW+ CE+++ +KA T+FATH L LA +
Sbjct: 622 NVTNRSLIVMDELGRATSSSDGLAMAWSCCEYLLS-LKAYTVFATHMDSLAELA----TI 676
Query: 794 DPHKQIVGVANYHVSAHIDESTRKLTMLYKVEPGACD-QSFGIHVAEFANFPESVVALAR 852
P+ +++ ++D +L +++ G +G+ +AE A P +V+ AR
Sbjct: 677 YPNVKVLHF-------YVDIRDNRLDFKFQLRDGTLHVPHYGLLLAEVAGLPSTVIDTAR 729
>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
chr3:8912418-8918086 REVERSE LENGTH=1109
Length = 1109
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 176/327 (53%), Gaps = 38/327 (11%)
Query: 558 QYQQILEEYKSCQKELVNRVVQTAATFSEVFESLAELISELDVLLSFADLAS----SCPT 613
Q Q + +E L+ ++ A +SEV + IS LDVL SFA AS S
Sbjct: 733 QNQDVTDENAETLTILIELFIERATQWSEVIHT----ISCLDVLRSFAIAASLSAGSMAR 788
Query: 614 PYTRPDITSSDE-----GDII-LEGSRHPCVEAQDWVNFIPNDCKL--IRRKSWF----- 660
P P+ ++D+ G I+ ++G HP A D +PND L RR S
Sbjct: 789 PVIFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLPVPNDILLGEARRSSGSIHPRS 848
Query: 661 QIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVST 720
++TGPNMGGKST +R + ++ AQ+G +VPC+ IS+ D IF R+GA D + G ST
Sbjct: 849 LLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGEST 908
Query: 721 FMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHF 780
F+ E ETAS+L+ AT SL+I+DELGRGTST+DG+ +A+++ H+VE ++ LFATH+
Sbjct: 909 FLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYSVFRHLVEKVQCRMLFATHY 968
Query: 781 HELTALALENVSDDPHKQIVGVANYHVSAHIDEST--------RKLTMLYKVEPGACDQS 832
H LT + + P V + H++ + + L LY++ GAC +S
Sbjct: 969 HPLT----KEFASHPR-----VTSKHMACAFKSRSDYQPRGCDQDLVFLYRLTEGACPES 1019
Query: 833 FGIHVAEFANFPESVVALAREKAAELE 859
+G+ VA A P VV A A ++
Sbjct: 1020 YGLQVALMAGIPNQVVETASGAAQAMK 1046
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 110/433 (25%), Positives = 175/433 (40%), Gaps = 70/433 (16%)
Query: 68 RQLG---SGLDALSSVSVSRNMFETIARDLLLERTDHTLEVYEGSGSNW----RLVKSGT 120
RQ+G SG+D ++R + R LE +D + G+N +LV+ T
Sbjct: 321 RQVGISESGIDEAVQKLLARGY--KVGRIEQLETSDQA----KARGANTIIPRKLVQVLT 374
Query: 121 P-----GNIGNFEDVLFANSEMQDSPVIVALSLNFRENGCTIGLGFVDLTKRVLGMAEFL 175
P GNIG L A E++ + ++ G FVD +
Sbjct: 375 PSTASEGNIGPDAVHLLAIKEIK---------MELQKCSTVYGFAFVDCAALRFWVGSIS 425
Query: 176 DDSHFTNVESALVALGCKECLVPIESGKSTENRMLCDVLTKCGAMLTERKK--------S 227
DD+ + + L+ + KE L G S E + T G+ +
Sbjct: 426 DDASCAALGALLMQVSPKEVLYD-SKGLSREAQKALRKYTLTGSTAVQLAPVPQVMGDTD 484
Query: 228 EFKTRDLVQDLGRLLKGSIEPVRDLVSGF---EFAPGALGALLSYAELLADESNYENFTL 284
R++++ G KGS E V G + A ALG L+++ L E ++ +
Sbjct: 485 AAGVRNIIESNG-YFKGSSESWNCAVDGLNECDVALSALGELINHLSRLKLEDVLKHGDI 543
Query: 285 RRYNL-DSYVRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHNWLKQPL 343
Y + +R+D M L + + D + +L+ ++ C + GKRLL NW+ PL
Sbjct: 544 FPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTLYKYLD-NCVSPTGKRLLRNWICHPL 602
Query: 344 LDVKEINSRLDVVQAFVEDPVLRQELRQHLKRISDIERLVHN------------------ 385
DV+ IN RLDVV+ F + Q Q+L ++ D+ERL+
Sbjct: 603 KDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLLGRIKSSVRSSASVLPALLGK 662
Query: 386 --LQKRRAGLQHIVKLYQSSIRLPYIKSTLEAYDGQFSSMMKSRY-LEPLQLWTDDDHLN 442
L++R IVK ++S I L L A + S+MM Y L L + L
Sbjct: 663 KVLKQRVKAFGQIVKGFRSGIDL------LLALQKE-SNMMSLLYKLCKLPILVGKSGLE 715
Query: 443 KFIGLVEASVDLD 455
F+ EA++D D
Sbjct: 716 LFLSQFEAAIDSD 728
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 181/332 (54%), Gaps = 19/332 (5%)
Query: 538 LETRKDGV-KFTNTKLKKLGDQYQQILEEYKSCQKELVNRVVQTAATFSEVFESLAELIS 596
L + K GV ++ +KKL + Q E +S K + R++ E + L +
Sbjct: 949 LCSSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATA 1008
Query: 597 ELDVLLSFADLASSCPTPYTRPDITSSDEGDII---LEGSRHPCVEAQDWV--NFIPNDC 651
ELDVL+S A + S RP I+ S + G HP + +F+PN+
Sbjct: 1009 ELDVLISLAFASDSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNV 1068
Query: 652 KLI-RRKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGA 710
K+ K+ F ++TGPNMGGKST +RQV + +++AQ+G+ VP + +S D I R+GA
Sbjct: 1069 KIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGA 1128
Query: 711 GDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVI 770
D + G STF+ E+ ETA +L AT SL+++DELGRGT+T DG +A ++ EH +E +
Sbjct: 1129 KDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKV 1188
Query: 771 KAPTLFATHFHELTALALENVSDDPHKQIVGVANYHVSAHIDE---STRKLTMLYKVEPG 827
+ F+TH+H L+ + +P V+ H++ I E ++T LY++ PG
Sbjct: 1189 QCRGFFSTHYHRLSV----DYQTNPK-----VSLCHMACQIGEGIGGVEEVTFLYRLTPG 1239
Query: 828 ACDQSFGIHVAEFANFPESVVALAREKAAELE 859
AC +S+G++VA A P+ V+ A K+ E E
Sbjct: 1240 ACPKSYGVNVARLAGLPDYVLQRAVIKSQEFE 1271
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 288 NLDSYVRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHNWLKQPLLDVK 347
N ++ LD+AA+ L + E+ + + +L+ +N+ C GKRLL WL +PL + +
Sbjct: 691 NEKQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQ-CITASGKRLLKTWLARPLYNTE 749
Query: 348 EINSRLDVVQAFV-EDPVLRQELRQHLKRISDIERLVHNL 386
I R D V E+ E R+ L R+ D+ERL+ +
Sbjct: 750 LIKERQDAVAILRGENLPYSLEFRKSLSRLPDMERLIARM 789
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 181/332 (54%), Gaps = 19/332 (5%)
Query: 538 LETRKDGV-KFTNTKLKKLGDQYQQILEEYKSCQKELVNRVVQTAATFSEVFESLAELIS 596
L + K GV ++ +KKL + Q E +S K + R++ E + L +
Sbjct: 946 LCSSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRFCEHQEKWRQLVSATA 1005
Query: 597 ELDVLLSFADLASSCPTPYTRPDITSSDEGDII---LEGSRHPCVEAQDWV--NFIPNDC 651
ELDVL+S A + S RP I+ S + G HP + +F+PN+
Sbjct: 1006 ELDVLISLAFASDSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNV 1065
Query: 652 KLI-RRKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGA 710
K+ K+ F ++TGPNMGGKST +RQV + +++AQ+G+ VP + +S D I R+GA
Sbjct: 1066 KIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGA 1125
Query: 711 GDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVI 770
D + G STF+ E+ ETA +L AT SL+++DELGRGT+T DG +A ++ EH +E +
Sbjct: 1126 KDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHFIEKV 1185
Query: 771 KAPTLFATHFHELTALALENVSDDPHKQIVGVANYHVSAHIDE---STRKLTMLYKVEPG 827
+ F+TH+H L+ + +P V+ H++ I E ++T LY++ PG
Sbjct: 1186 QCRGFFSTHYHRLSV----DYQTNPK-----VSLCHMACQIGEGIGGVEEVTFLYRLTPG 1236
Query: 828 ACDQSFGIHVAEFANFPESVVALAREKAAELE 859
AC +S+G++VA A P+ V+ A K+ E E
Sbjct: 1237 ACPKSYGVNVARLAGLPDYVLQRAVIKSQEFE 1268
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 288 NLDSYVRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHNWLKQPLLDVK 347
N ++ LD+AA+ L + E+ + + +L+ +N+ C GKRLL WL +PL + +
Sbjct: 688 NEKQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQ-CITASGKRLLKTWLARPLYNTE 746
Query: 348 EINSRLDVVQAFV-EDPVLRQELRQHLKRISDIERLVHNL 386
I R D V E+ E R+ L R+ D+ERL+ +
Sbjct: 747 LIKERQDAVAILRGENLPYSLEFRKSLSRLPDMERLIARM 786
>AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 |
chr3:7143546-7150811 FORWARD LENGTH=807
Length = 807
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 165/652 (25%), Positives = 288/652 (44%), Gaps = 84/652 (12%)
Query: 289 LDSYVRLDSAAMRALNVLESKTD--------ANKNFSLFGLMNRTCTAGMGKRLLHNWLK 340
L+ +++LD+AA AL + ++ A + FS+FG+MN+ C MG+RLL +W
Sbjct: 179 LNKFLKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNK-CATPMGRRLLRSWFM 237
Query: 341 QPLLDVKEINSRLDVVQAFVEDPVLRQELRQHLKRISDIERLVHNLQ------------- 387
+P+LD++ ++ RL+ + F+ L LR+ LK + DI L+
Sbjct: 238 RPILDLEVLDRRLNAISFFISSVELMASLRETLKSVKDISHLLKKFNSPTSLCTSNDWTA 297
Query: 388 --KRRAGLQHIVKLYQSSIRLPYIKSTLEAYDGQFSSMMKSRYLEPLQLWTDDDHLNKFI 445
K + L H+ K+++ + +L + +F+ + + L + T+ D++ +
Sbjct: 298 FLKSISALLHVNKIFEVG-----VSESLREHMRRFNLDIIEK--AGLCISTELDYVYE-- 348
Query: 446 GLVEASVDLDQLENREYM-------------IAPSYDAXXXXXXXXXXXXXSQIQNLHRQ 492
LV +D+ + + R Y + Y+ +LH++
Sbjct: 349 -LVIGVIDVTRSKERGYQTLVKEGFCAELDELRQIYEELPEFLQEVSAMELEHFPHLHKE 407
Query: 493 TADDLDLPIDKALKLDKGTQFGHVFRI--TKKEEPKIRKKLNTQFIVLETRKDGVKF--T 548
+ I Q G++ I K +E + + +F + + +F
Sbjct: 408 KLPPCIVYIQ---------QIGYLMCIFGEKLDETALNRLTEFEFAFSDMDGETQRFFYH 458
Query: 549 NTKLKKLGDQYQQILEEYKSCQKELVNRVVQTAATFSEVFESLAELISELDVLLSFADLA 608
+K ++L + I + ++ ++ ++ FS ++ELD +LS A +A
Sbjct: 459 TSKTRELDNLLGDIYHKILDMERAIIRDLLSHTLLFSAHLLKAVNFVAELDCILSLACVA 518
Query: 609 SSCPTPYTRPDITSSDEGDIILEGSRHPCVE-AQDWVNFIPNDCKLIRRKSWFQIITGPN 667
Y RP +T DI RH E A D FIPND + I IITGPN
Sbjct: 519 HQ--NNYVRPVLTVESLLDI--RNGRHVLQEMAVD--TFIPNDTE-INDNGRIHIITGPN 571
Query: 668 MGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLE 727
GKS +++QV + + ++ +GSFVP D A++ + D IF +G+ STFM ++ +
Sbjct: 572 YSGKSIYVKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKFMTAEQ-STFMIDLHQ 630
Query: 728 TASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAP-TLFATHFHELTAL 786
+L+ AT +SL ++DE G+GT T DG GL H + P + TH EL
Sbjct: 631 VGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRVVVCTHLTELLNE 690
Query: 787 ALENVSDDPHKQIVGVANYHV-SAHIDESTRKLTMLYKVEPGACDQSFGIHVAEFANFPE 845
+ VS+ + V SA+++E + LY++ PG S+G+H A A PE
Sbjct: 691 SCLPVSEKIKFYTMSVLRPDTESANMEE----IVFLYRLIPGQTLLSYGLHCALLAGVPE 746
Query: 846 SVVALAREKAAELEDFSPS------AISLIDTTEQAGSKRKRVFESDDMSQG 891
VV + A L+ F + ++ I + +QA F D+S+G
Sbjct: 747 EVV---KRAAIVLDAFESNNNVDKLSLDKISSQDQAFKDAVDKFAELDISKG 795
>AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr5:21948283-21952550 REVERSE LENGTH=796
Length = 796
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 647 IPNDCKLIRRKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFV-PCDKASISVRDCIF 705
IP D + I + + +ITGPN GGK+ ++ VG+ +MA+ G +V + A I D I+
Sbjct: 424 IPADFQ-ISKGTRVLVITGPNTGGKTICLKSVGLAAMMAKSGLYVLATESARIPWFDNIY 482
Query: 706 ARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEH 765
A +G L+ +STF + + + IL +T +SL+++DE+G GT+ +G L AI E
Sbjct: 483 ADIGDEQSLLQSLSTFSGHLKQISEILSHSTSRSLVLLDEVGAGTNPLEGAALGMAILES 542
Query: 766 IVEVIKAPTLFATHFHELTALALENVSDDPHKQIVGVANYHVSAHIDESTRKLTMLYKVE 825
E T+ TH EL L N A + D+ K T YK+
Sbjct: 543 FAESGSLLTMATTHHGELKTLKYSN-----------SAFENACMEFDDLNLKPT--YKIL 589
Query: 826 PGACDQSFGIHVAEFANFPESVVALARE 853
G +S I++A+ P ++ ARE
Sbjct: 590 WGVPGRSNAINIADRLGLPCDIIESARE 617
>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein
homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118
Length = 1118
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 662 IITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTF 721
++TGPN GGKS+ +R + L+ G VP + A I D I + + D + G S+F
Sbjct: 765 LLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSF 824
Query: 722 MQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFH 781
EM E SI+ AT +SL++IDE+ RGT T G +A ++ E + + + +TH H
Sbjct: 825 QVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESL-DTSGCLGIVSTHLH 883
Query: 782 ELTALALENVSDDPHKQIVGVANYHVSAHIDESTRKLTMLYKVEPGACDQSFGIHVAEFA 841
+ +L L + + + +G N E K T +K+ G C +S A+
Sbjct: 884 GIFSLPL--TAKNITYKAMGAENV-------EGQTKPT--WKLTDGVCRESLAFETAKRE 932
Query: 842 NFPESVVALA 851
PESV+ A
Sbjct: 933 GVPESVIQRA 942
>AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173047-24176244 REVERSE LENGTH=876
Length = 876
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 647 IPNDCKLIRRKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKAS-ISVRDCIF 705
+P D K + + +I+GPN GGK+ ++ +G+ LM++ G ++P + D I
Sbjct: 385 VPVDIK-VESSAKVVVISGPNTGGKTALLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLIL 443
Query: 706 ARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEH 765
A +G + +STF + IL A++ SL+++DE+ GT +G LA +I ++
Sbjct: 444 ADIGDPQSLEQSLSTFSGHISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQY 503
Query: 766 IVEVIKAPTLFATHFHELTAL 786
I + + +TH+ +L+ L
Sbjct: 504 IKNRVNV-AVVSTHYGDLSRL 523
>AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173132-24176244 REVERSE LENGTH=857
Length = 857
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 75/141 (53%), Gaps = 3/141 (2%)
Query: 647 IPNDCKLIRRKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKAS-ISVRDCIF 705
+P D K + + +I+GPN GGK+ ++ +G+ LM++ G ++P + D I
Sbjct: 385 VPVDIK-VESSAKVVVISGPNTGGKTALLKTLGLLSLMSKSGMYLPAKNCPRLPWFDLIL 443
Query: 706 ARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEH 765
A +G + +STF + IL A++ SL+++DE+ GT +G LA +I ++
Sbjct: 444 ADIGDPQSLEQSLSTFSGHISRIRQILDIASENSLVLLDEICSGTDPSEGVALATSILQY 503
Query: 766 IVEVIKAPTLFATHFHELTAL 786
I + + +TH+ +L+ L
Sbjct: 504 IKNRVNV-AVVSTHYGDLSRL 523