Miyakogusa Predicted Gene
- Lj4g3v1787030.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1787030.1 tr|Q1WK55|Q1WK55_LOTJA CYC5 OS=Lotus japonicus
PE=2 SV=1,98.91,0,TCP,Transcription factor TCP subgroup; R,CYC/TB1, R
domain; TCP,Transcription factor, TCP; seg,NULL,CUFF.49715.1
(388 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | TCP family transcr... 90 3e-18
AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | TCP family transcr... 90 3e-18
AT1G67260.2 | Symbols: TCP1 | TCP family transcription factor |... 85 7e-17
AT1G67260.1 | Symbols: TCP1 | TCP family transcription factor |... 85 8e-17
AT1G68800.1 | Symbols: BRC2, TCP12 | TCP domain protein 12 | chr... 83 3e-16
AT3G15030.3 | Symbols: TCP4 | TCP family transcription factor 4 ... 68 1e-11
AT3G15030.2 | Symbols: TCP4 | TCP family transcription factor 4 ... 68 1e-11
AT3G15030.1 | Symbols: TCP4, MEE35 | TCP family transcription fa... 68 1e-11
AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea and... 67 2e-11
AT1G30210.2 | Symbols: TCP24 | TEOSINTE BRANCHED 1, cycloidea, a... 64 2e-10
AT1G30210.1 | Symbols: TCP24, ATTCP24 | TEOSINTE BRANCHED 1, cyc... 64 2e-10
AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | plastid transcription... 64 2e-10
AT3G02150.2 | Symbols: PTF1, TFPD | plastid transcription factor... 64 3e-10
AT4G18390.2 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and... 63 3e-10
AT4G18390.1 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and... 63 3e-10
AT2G31070.1 | Symbols: TCP10 | TCP domain protein 10 | chr2:1322... 62 6e-10
AT5G60970.1 | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea and... 60 2e-09
AT5G08070.1 | Symbols: TCP17 | TCP domain protein 17 | chr5:2584... 56 5e-08
>AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | TCP family
transcription factor | chr3:6383769-6385604 FORWARD
LENGTH=429
Length = 429
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 45/53 (84%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLA 184
I TA+G RDRRMRLSL+VAK FGLQDMLGFDKASKTV+WLL QAK EI +A
Sbjct: 155 IKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIA 207
>AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | TCP family
transcription factor | chr3:6383769-6385604 FORWARD
LENGTH=433
Length = 433
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 45/53 (84%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLA 184
I TA+G RDRRMRLSL+VAK FGLQDMLGFDKASKTV+WLL QAK EI +A
Sbjct: 155 IKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIA 207
>AT1G67260.2 | Symbols: TCP1 | TCP family transcription factor |
chr1:25168152-25169307 REVERSE LENGTH=351
Length = 351
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 49/58 (84%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLAREKNL 189
I TA+G+RDRR+RLS+ +A++FF LQDMLGFDKASKT+DWLL +++ IK + + KNL
Sbjct: 94 IQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQAKNL 151
>AT1G67260.1 | Symbols: TCP1 | TCP family transcription factor |
chr1:25168228-25169307 REVERSE LENGTH=359
Length = 359
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 49/58 (84%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLAREKNL 189
I TA+G+RDRR+RLS+ +A++FF LQDMLGFDKASKT+DWLL +++ IK + + KNL
Sbjct: 94 IQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAIKEVVQAKNL 151
>AT1G68800.1 | Symbols: BRC2, TCP12 | TCP domain protein 12 |
chr1:25847306-25848471 REVERSE LENGTH=356
Length = 356
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 111 GTATEQVAVXXXXXXXXXXXXINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVD 170
G+ +++V I TA+G RDRRMRLSL++A++FF LQDMLGFDKASKT++
Sbjct: 98 GSTSQEVQWRRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIE 157
Query: 171 WLLNQAKVEIKHL 183
WL +++K IK L
Sbjct: 158 WLFSKSKTSIKQL 170
>AT3G15030.3 | Symbols: TCP4 | TCP family transcription factor 4 |
chr3:5062308-5063570 FORWARD LENGTH=420
Length = 420
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLA 184
+ TA+G RDRR+RLS A +F+ +QD LGFD+ SK VDWL+ +AK I LA
Sbjct: 52 VCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
>AT3G15030.2 | Symbols: TCP4 | TCP family transcription factor 4 |
chr3:5062308-5063570 FORWARD LENGTH=420
Length = 420
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLA 184
+ TA+G RDRR+RLS A +F+ +QD LGFD+ SK VDWL+ +AK I LA
Sbjct: 52 VCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
>AT3G15030.1 | Symbols: TCP4, MEE35 | TCP family transcription
factor 4 | chr3:5062308-5063570 FORWARD LENGTH=420
Length = 420
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLA 184
+ TA+G RDRR+RLS A +F+ +QD LGFD+ SK VDWL+ +AK I LA
Sbjct: 52 VCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
>AT1G53230.1 | Symbols: TCP3 | TEOSINTE BRANCHED 1, cycloidea and
PCF transcription factor 3 | chr1:19850260-19851435
REVERSE LENGTH=391
Length = 391
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLAR 185
+ TA+G RDRR+RLS A +F+ +QD LGFD+ SK VDWL+ +AK I LA+
Sbjct: 56 VCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQ 109
>AT1G30210.2 | Symbols: TCP24 | TEOSINTE BRANCHED 1, cycloidea, and
PCF family 24 | chr1:10628754-10629728 REVERSE
LENGTH=324
Length = 324
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 134 TARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHL 183
T++GLRDRR+RLS+ A +F+ LQD LGFD+ SK V+WL+N A I L
Sbjct: 59 TSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108
>AT1G30210.1 | Symbols: TCP24, ATTCP24 | TEOSINTE BRANCHED 1,
cycloidea, and PCF family 24 | chr1:10628754-10629728
REVERSE LENGTH=324
Length = 324
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 134 TARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHL 183
T++GLRDRR+RLS+ A +F+ LQD LGFD+ SK V+WL+N A I L
Sbjct: 59 TSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDL 108
>AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | plastid transcription
factor 1 | chr3:391522-392450 FORWARD LENGTH=278
Length = 278
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHL 183
+ T RGLRDRR+RLS+ A + + LQ+ LG D+ SK VDWLL+ AK EI L
Sbjct: 81 VCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDEL 132
>AT3G02150.2 | Symbols: PTF1, TFPD | plastid transcription factor 1
| chr3:391522-392589 FORWARD LENGTH=355
Length = 355
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHL 183
+ T RGLRDRR+RLS+ A + + LQ+ LG D+ SK VDWLL+ AK EI L
Sbjct: 81 VCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDEL 132
>AT4G18390.2 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and
PCF transcription factor 2 | chr4:10163212-10164309
REVERSE LENGTH=365
Length = 365
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 134 TARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLAREKNLHHP 192
T++G RDRR+RLS+ A +F+ LQD LG+D+ SK V+WL+ A+ I L N H P
Sbjct: 51 TSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLNNTHFP 109
>AT4G18390.1 | Symbols: TCP2 | TEOSINTE BRANCHED 1, cycloidea and
PCF transcription factor 2 | chr4:10163212-10164309
REVERSE LENGTH=365
Length = 365
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 134 TARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHLAREKNLHHP 192
T++G RDRR+RLS+ A +F+ LQD LG+D+ SK V+WL+ A+ I L N H P
Sbjct: 51 TSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSLNNTHFP 109
>AT2G31070.1 | Symbols: TCP10 | TCP domain protein 10 |
chr2:13220984-13222069 REVERSE LENGTH=361
Length = 361
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 37/52 (71%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHL 183
+ T++G RDRR+RLS A +F+ +QD LG+D+ SK VDWL+ +AK I L
Sbjct: 36 VFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKL 87
>AT5G60970.1 | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea and
PCF transcription factor 5 | chr5:24535570-24536652
REVERSE LENGTH=360
Length = 360
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHL 183
+ T RGLRDRR+RLS+ A + + LQD LG + SK +DWLL AK ++ L
Sbjct: 70 VCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKL 121
>AT5G08070.1 | Symbols: TCP17 | TCP domain protein 17 |
chr5:2584885-2585613 FORWARD LENGTH=242
Length = 242
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 132 INTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKHL 183
+ T RGLRDRR+RLS+ A + + LQ+ LG + SK +DWLL AK ++ L
Sbjct: 40 VCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKNDVDLL 91