Miyakogusa Predicted Gene

Lj4g3v1787010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1787010.1 Non Chatacterized Hit- tr|J3MXC7|J3MXC7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB09G1,51.75,2e-18,seg,NULL; coiled-coil,NULL,CUFF.49740.1
         (397 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73960.2 | Symbols: TAF2 | TBP-associated factor 2 | chr1:278...   125   6e-29
AT1G73960.1 | Symbols: TAF2 | TBP-associated factor 2 | chr1:278...   125   8e-29

>AT1G73960.2 | Symbols: TAF2 | TBP-associated factor 2 |
            chr1:27805173-27814433 REVERSE LENGTH=1370
          Length = 1370

 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 137/253 (54%), Gaps = 31/253 (12%)

Query: 6    RPPTLHGIPRENRTLHMSLTEACNSQRNILVL--------------DLENKPLEM-PSST 50
            RPPTL G+P+E + L +   EAC   +N+ ++              D + + L++ P   
Sbjct: 971  RPPTLFGVPKE-KPLQLVDVEACIEPKNVFLVPGAEAGEPSLSALGDAKGQSLDVAPYGV 1029

Query: 51   LNITQDLAMT----EGLSDALVESPKDQTCEAPKQADVEALKEAPL--EIPKEV---LIE 101
              I Q++ M       L + +    + Q  E   ++  +   E P+  EIP +V     E
Sbjct: 1030 PIIPQEMFMPIVPELMLPEPVAAYDETQHLEPRMESQNQPSHENPIVHEIPSDVEGPTEE 1089

Query: 102  FQHEAPIEAPNEVSKEADTVSNS--HE-RKRPIKIKVKQSSATSRADTDNQMVERSLG-- 156
              H        E  KE D VS S  HE +K  I+IKV+ S ATSRA+   + +ERS G  
Sbjct: 1090 LAHREANPPTKEPQKEPDVVSVSVSHEVKKSVIRIKVRPSGATSRAEGSARTIERSQGIV 1149

Query: 157  ARNEMDHGASSSVSVDAPQRNFVETLSISNHN-IEEVNSCHDHCSRMTASIGSAKFLSNG 215
             R+++D G +SS SVDAPQR   + +SISN N +EEVNSCHD  SRMTASIGS KF S G
Sbjct: 1150 VRHDIDRGQTSSASVDAPQRISTDAVSISNQNHVEEVNSCHDVGSRMTASIGSVKFASEG 1209

Query: 216  DELVKELQCTADS 228
            D   KELQCTA+S
Sbjct: 1210 DIFGKELQCTAES 1222


>AT1G73960.1 | Symbols: TAF2 | TBP-associated factor 2 |
            chr1:27805173-27814433 REVERSE LENGTH=1390
          Length = 1390

 Score =  125 bits (313), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/253 (39%), Positives = 137/253 (54%), Gaps = 31/253 (12%)

Query: 6    RPPTLHGIPRENRTLHMSLTEACNSQRNILVL--------------DLENKPLEM-PSST 50
            RPPTL G+P+E + L +   EAC   +N+ ++              D + + L++ P   
Sbjct: 991  RPPTLFGVPKE-KPLQLVDVEACIEPKNVFLVPGAEAGEPSLSALGDAKGQSLDVAPYGV 1049

Query: 51   LNITQDLAMT----EGLSDALVESPKDQTCEAPKQADVEALKEAPL--EIPKEV---LIE 101
              I Q++ M       L + +    + Q  E   ++  +   E P+  EIP +V     E
Sbjct: 1050 PIIPQEMFMPIVPELMLPEPVAAYDETQHLEPRMESQNQPSHENPIVHEIPSDVEGPTEE 1109

Query: 102  FQHEAPIEAPNEVSKEADTVSNS--HE-RKRPIKIKVKQSSATSRADTDNQMVERSLG-- 156
              H        E  KE D VS S  HE +K  I+IKV+ S ATSRA+   + +ERS G  
Sbjct: 1110 LAHREANPPTKEPQKEPDVVSVSVSHEVKKSVIRIKVRPSGATSRAEGSARTIERSQGIV 1169

Query: 157  ARNEMDHGASSSVSVDAPQRNFVETLSISNHN-IEEVNSCHDHCSRMTASIGSAKFLSNG 215
             R+++D G +SS SVDAPQR   + +SISN N +EEVNSCHD  SRMTASIGS KF S G
Sbjct: 1170 VRHDIDRGQTSSASVDAPQRISTDAVSISNQNHVEEVNSCHDVGSRMTASIGSVKFASEG 1229

Query: 216  DELVKELQCTADS 228
            D   KELQCTA+S
Sbjct: 1230 DIFGKELQCTAES 1242