Miyakogusa Predicted Gene

Lj4g3v1786990.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1786990.1 CUFF.49741.1
         (600 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73960.1 | Symbols: TAF2 | TBP-associated factor 2 | chr1:278...   789   0.0  
AT1G73960.2 | Symbols: TAF2 | TBP-associated factor 2 | chr1:278...   788   0.0  
AT4G33090.1 | Symbols: APM1, ATAPM1 | aminopeptidase M1 | chr4:1...    53   7e-07

>AT1G73960.1 | Symbols: TAF2 | TBP-associated factor 2 |
           chr1:27805173-27814433 REVERSE LENGTH=1390
          Length = 1390

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/597 (62%), Positives = 452/597 (75%), Gaps = 7/597 (1%)

Query: 1   MAKPRKPKNEDS----KPENSGAIVHHQKLCLSIDLHKRLLYGYTELKIAVPEIGIVGLH 56
           MAK RKPKNE++      EN+GA V HQKL LSID  KR +YGYTEL+++VP+IGIVGLH
Sbjct: 1   MAKARKPKNEEAPGAKTSENTGAKVLHQKLFLSIDFKKRQIYGYTELEVSVPDIGIVGLH 60

Query: 57  AENLGIGGVWVDGEPTEFEYYPHQQQQVEEDGKRWXXXXXXXXXXXXXXXLYLSSLEKEL 116
           AENLGI  V VDGEPT FEYYPH Q    E    W                Y+  L++E 
Sbjct: 61  AENLGIESVLVDGEPTVFEYYPHHQNS--ETESNWNSVSDPASAADAAAMEYVGVLKRED 118

Query: 117 VPNLLINCCKPFKPETEQQEQPVSENGFHSA-EPKQNVRSVRIDYWVEKAETGIHFRDNL 175
             NLLINCCKP K  +EQ +    ENG  S+ E KQNV+ +RI+YWVEK E+GIHF  N+
Sbjct: 119 TANLLINCCKPSKDLSEQLDSVTLENGSQSSGEAKQNVKLIRINYWVEKIESGIHFDGNI 178

Query: 176 LHTDNQIRRARCWFPCIDDNSQRCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPRKTYV 235
           +HTDNQ+RRARCWFPCIDD   RC +DLEFTV HN VAVS G LLYQV+ K++  +KTYV
Sbjct: 179 VHTDNQMRRARCWFPCIDDEYHRCSFDLEFTVPHNFVAVSVGKLLYQVMCKEDTTQKTYV 238

Query: 236 YKLDVPVAARWISLAVAPFEILPDHQFSLVSHMCLPPNLSKMRNTVDFFHSAFSCYKDYL 295
           Y+L +P+A RW+SL   P EILPD    L+S++CLP +LS++RNT++FFH A+S Y+DYL
Sbjct: 239 YELAIPIAPRWVSLVAGPLEILPDQTNFLISNLCLPHDLSRLRNTMEFFHEAYSYYEDYL 298

Query: 296 SLDFPFDSYKQVFIEPEMAVXXXXXXXXXXXXXXQVLFDEKVIDQTIDTRVKLAYALARQ 355
           S +FPF  YKQVF+ PEM V               +L+DE+VIDQTIDTR+KLA ALA+Q
Sbjct: 299 SANFPFGFYKQVFLPPEMVVTSSTSGASLSIFSSHILYDERVIDQTIDTRIKLASALAKQ 358

Query: 356 WFGVYISPEAPNDEWLLEGLAGFLTDFFIKKHLGNNEARYLRYKANCAVCKVDNSGATAL 415
           WFGVYI+PE+PND+WLL+GLAGFLTD FIK+ LGNNEARY RYKANCAVCK D+SGA  L
Sbjct: 359 WFGVYITPESPNDDWLLDGLAGFLTDMFIKQFLGNNEARYRRYKANCAVCKADDSGAMCL 418

Query: 416 SCSASCKDLYGTQSIGLYGKIRSWKSVAVLQMLEKQMGPESFRRILQTIVARAQDKSRSM 475
           S S SC+DL+GT SIG++GKIRSWKS AVLQMLEKQMG +SFR+ILQ I++RA+D S S+
Sbjct: 419 SSSPSCRDLFGTHSIGMHGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSI 478

Query: 476 KTLSTKEFRHFANKVGNLERPFLKDFFPRWVGSCGCPDLRMGFSYNKRKNMVELAVLREC 535
           ++LSTKEFR FANK+GNLERPFLK+FF RWV S GCP LR+G SYNKRKN VE+A LREC
Sbjct: 479 RSLSTKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALREC 538

Query: 536 TALQASSTSILDIKPDSENKDGDTGWPGMMSIRVYELDGMYDHPILPMAGERRQTLE 592
           TA   +  S++    DSE++D D GWPG+MSIRVYELDGM DHP LPMAG+R Q LE
Sbjct: 539 TAALDARLSVIGATSDSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLE 595


>AT1G73960.2 | Symbols: TAF2 | TBP-associated factor 2 |
           chr1:27805173-27814433 REVERSE LENGTH=1370
          Length = 1370

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/597 (62%), Positives = 452/597 (75%), Gaps = 7/597 (1%)

Query: 1   MAKPRKPKNEDS----KPENSGAIVHHQKLCLSIDLHKRLLYGYTELKIAVPEIGIVGLH 56
           MAK RKPKNE++      EN+GA V HQKL LSID  KR +YGYTEL+++VP+IGIVGLH
Sbjct: 1   MAKARKPKNEEAPGAKTSENTGAKVLHQKLFLSIDFKKRQIYGYTELEVSVPDIGIVGLH 60

Query: 57  AENLGIGGVWVDGEPTEFEYYPHQQQQVEEDGKRWXXXXXXXXXXXXXXXLYLSSLEKEL 116
           AENLGI  V VDGEPT FEYYPH Q    E    W                Y+  L++E 
Sbjct: 61  AENLGIESVLVDGEPTVFEYYPHHQNS--ETESNWNSVSDPASAADAAAMEYVGVLKRED 118

Query: 117 VPNLLINCCKPFKPETEQQEQPVSENGFHSA-EPKQNVRSVRIDYWVEKAETGIHFRDNL 175
             NLLINCCKP K  +EQ +    ENG  S+ E KQNV+ +RI+YWVEK E+GIHF  N+
Sbjct: 119 TANLLINCCKPSKDLSEQLDSVTLENGSQSSGEAKQNVKLIRINYWVEKIESGIHFDGNI 178

Query: 176 LHTDNQIRRARCWFPCIDDNSQRCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPRKTYV 235
           +HTDNQ+RRARCWFPCIDD   RC +DLEFTV HN VAVS G LLYQV+ K++  +KTYV
Sbjct: 179 VHTDNQMRRARCWFPCIDDEYHRCSFDLEFTVPHNFVAVSVGKLLYQVMCKEDTTQKTYV 238

Query: 236 YKLDVPVAARWISLAVAPFEILPDHQFSLVSHMCLPPNLSKMRNTVDFFHSAFSCYKDYL 295
           Y+L +P+A RW+SL   P EILPD    L+S++CLP +LS++RNT++FFH A+S Y+DYL
Sbjct: 239 YELAIPIAPRWVSLVAGPLEILPDQTNFLISNLCLPHDLSRLRNTMEFFHEAYSYYEDYL 298

Query: 296 SLDFPFDSYKQVFIEPEMAVXXXXXXXXXXXXXXQVLFDEKVIDQTIDTRVKLAYALARQ 355
           S +FPF  YKQVF+ PEM V               +L+DE+VIDQTIDTR+KLA ALA+Q
Sbjct: 299 SANFPFGFYKQVFLPPEMVVTSSTSGASLSIFSSHILYDERVIDQTIDTRIKLASALAKQ 358

Query: 356 WFGVYISPEAPNDEWLLEGLAGFLTDFFIKKHLGNNEARYLRYKANCAVCKVDNSGATAL 415
           WFGVYI+PE+PND+WLL+GLAGFLTD FIK+ LGNNEARY RYKANCAVCK D+SGA  L
Sbjct: 359 WFGVYITPESPNDDWLLDGLAGFLTDMFIKQFLGNNEARYRRYKANCAVCKADDSGAMCL 418

Query: 416 SCSASCKDLYGTQSIGLYGKIRSWKSVAVLQMLEKQMGPESFRRILQTIVARAQDKSRSM 475
           S S SC+DL+GT SIG++GKIRSWKS AVLQMLEKQMG +SFR+ILQ I++RA+D S S+
Sbjct: 419 SSSPSCRDLFGTHSIGMHGKIRSWKSGAVLQMLEKQMGSDSFRKILQKIISRAKDPSNSI 478

Query: 476 KTLSTKEFRHFANKVGNLERPFLKDFFPRWVGSCGCPDLRMGFSYNKRKNMVELAVLREC 535
           ++LSTKEFR FANK+GNLERPFLK+FF RWV S GCP LR+G SYNKRKN VE+A LREC
Sbjct: 479 RSLSTKEFRQFANKIGNLERPFLKEFFQRWVASYGCPVLRIGLSYNKRKNNVEMAALREC 538

Query: 536 TALQASSTSILDIKPDSENKDGDTGWPGMMSIRVYELDGMYDHPILPMAGERRQTLE 592
           TA   +  S++    DSE++D D GWPG+MSIRVYELDGM DHP LPMAG+R Q LE
Sbjct: 539 TAALDARLSVIGATSDSESRDVDAGWPGIMSIRVYELDGMSDHPKLPMAGDRWQLLE 595


>AT4G33090.1 | Symbols: APM1, ATAPM1 | aminopeptidase M1 |
           chr4:15965915-15970418 REVERSE LENGTH=879
          Length = 879

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 89/213 (41%), Gaps = 8/213 (3%)

Query: 172 RDNLLHTDNQIRRARCWFPCIDDNSQRCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPR 231
           + N+  T  +   AR  FPC D+ + +  + +   V  +LVA+S   ++ +   K N   
Sbjct: 129 KKNMAVTQFEPADARRCFPCWDEPACKATFKITLEVPTDLVALSNMPIMEE---KVNGNL 185

Query: 232 KTYVYKLDVPVAARWISLAVAPFEILPDHQFS--LVSHMCLPPNLSKMRNTVDFFHSAFS 289
           K   Y+    ++   +++ V  F+ + DH      V   C      + +  +        
Sbjct: 186 KIVSYQESPIMSTYLVAIVVGLFDYVEDHTSDGIKVRVYCQVGKADQGKFALHVGAKTLD 245

Query: 290 CYKDYLSLDFPFDSYKQVFIEPEMAVXXXXXXXXXXXXXXQVLFDEKVIDQTIDTRVK-- 347
            +K+Y ++ +P      + I P+ A                +L+DE+    +   RV   
Sbjct: 246 LFKEYFAVPYPLPKMDMIAI-PDFAAGAMENYGLVTYRETALLYDEQHSAASNKQRVATV 304

Query: 348 LAYALARQWFGVYISPEAPNDEWLLEGLAGFLT 380
           +A+ LA QWFG  ++ E     WL EG A +++
Sbjct: 305 VAHELAHQWFGNLVTMEWWTHLWLNEGFATWVS 337