Miyakogusa Predicted Gene

Lj4g3v1784860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1784860.1 Non Chatacterized Hit- tr|I1LB73|I1LB73_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,37.3,3e-19,Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like; no
description,Nucleic acid-bindin,CUFF.49779.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18580.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   228   2e-60
AT4G11060.1 | Symbols: MTSSB | mitochondrially targeted single-s...    98   4e-21

>AT3G18580.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr3:6396940-6398068 REVERSE LENGTH=217
          Length = 217

 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/155 (68%), Positives = 130/155 (83%), Gaps = 1/155 (0%)

Query: 56  ERTIFDRPLENGLDVGIYRAILVGKVGQTPLQKKLKSGTVVTLLSLGTGGIRNNRRPLDN 115
           ER + +RPLENGLD GI++AILVG+VGQ PLQKKLKSG  VTL S+GTGGIRNNRRPL N
Sbjct: 64  ERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLIN 123

Query: 116 ESPRDYANRCAVQWHRVTIYPERLGTLVMKHATPGSTLYVEGNLESKVFSDPTTGLVRRI 175
           E PR+YA+R AVQWHRV++YPERL  LV+K+  PG+ +Y+EGNLE+K+F+DP TGLVRRI
Sbjct: 124 EDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLETKIFTDPVTGLVRRI 183

Query: 176 REVSVRRNGRVVFLGQGGDADADTQQNDLKAVGYY 210
           REV++RRNGRVVFLG+ GD    +   +L+ VGYY
Sbjct: 184 REVAIRRNGRVVFLGKAGDMQQPSSA-ELRGVGYY 217


>AT4G11060.1 | Symbols: MTSSB | mitochondrially targeted
           single-stranded DNA binding protein |
           chr4:6754820-6756230 REVERSE LENGTH=201
          Length = 201

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 78/122 (63%), Gaps = 6/122 (4%)

Query: 71  GIYRAILVGKVGQTPLQKKLKSGTVVTLLSLGTGGIRNNRRPLDNESPRDYANRCAVQWH 130
           G++RAI+ GKVGQ PLQK L++G  VT+ ++GTGG+ + R       P+        QWH
Sbjct: 70  GVHRAIICGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWH 123

Query: 131 RVTIYPERLGTLVMKHATPGSTLYVEGNLESKVFSDPTTGLVRRIREVSVRRNGRVVFLG 190
           R+ ++ E LG+  ++     S++YVEG++E++V++D  +  V+ I E+ VRR+G++  + 
Sbjct: 124 RIAVHNEVLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIK 183

Query: 191 QG 192
            G
Sbjct: 184 YG 185