Miyakogusa Predicted Gene

Lj4g3v1720830.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1720830.1 Non Chatacterized Hit- tr|F6H490|F6H490_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,58.67,3e-19,DUF1675,Protein of unknown function DUF1675; SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL,CUFF.49632.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29575.4 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   101   3e-22
AT3G29575.3 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   101   3e-22
AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   101   3e-22
AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) fami...    89   2e-18
AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1:...    89   2e-18
AT1G69260.1 | Symbols: AFP1 | ABI five binding protein | chr1:26...    88   3e-18
AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding prot...    75   4e-14
AT4G28910.3 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    66   1e-11
AT4G28910.1 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    66   1e-11
AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    66   1e-11

>AT3G29575.4 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 117 AMDILRQMPRVTTTGDGPNGKRIEGLLHKY-KGGQVCIVCVCHGSFLSPTEFVMHAGGKE 175
           + +I+  MP V+TTGDGPNGK+I G L++Y KG +V IVCVCHGSFLSP EFV HAGG +
Sbjct: 156 SQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGD 215

Query: 176 VANPMTHITVCSDSF 190
           VA+P+ HI V    F
Sbjct: 216 VAHPLKHIVVNPSPF 230


>AT3G29575.3 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 117 AMDILRQMPRVTTTGDGPNGKRIEGLLHKY-KGGQVCIVCVCHGSFLSPTEFVMHAGGKE 175
           + +I+  MP V+TTGDGPNGK+I G L++Y KG +V IVCVCHGSFLSP EFV HAGG +
Sbjct: 156 SQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGD 215

Query: 176 VANPMTHITVCSDSF 190
           VA+P+ HI V    F
Sbjct: 216 VAHPLKHIVVNPSPF 230


>AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 117 AMDILRQMPRVTTTGDGPNGKRIEGLLHKY-KGGQVCIVCVCHGSFLSPTEFVMHAGGKE 175
           + +I+  MP V+TTGDGPNGK+I G L++Y KG +V IVCVCHGSFLSP EFV HAGG +
Sbjct: 156 SQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHAGGGD 215

Query: 176 VANPMTHITVCSDSF 190
           VA+P+ HI V    F
Sbjct: 216 VAHPLKHIVVNPSPF 230


>AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           | chr3:2300579-2308305 REVERSE LENGTH=1294
          Length = 1294

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 114 GDDAMDILRQMPRVTTTGDGPNGKRIEGLLHKYKGGQVCIVCVCHGSFLSPTEFVMHAGG 173
           G+ ++    QMP VT+TG+GP GK + G L++Y   ++ I+CVCHG+  SP EF++HAGG
Sbjct: 210 GNGSLLPFAQMPCVTSTGNGPEGKTVNGFLYRYSKSEISIICVCHGTSFSPAEFIVHAGG 269

Query: 174 KEVANPMTHITVCSDSFC 191
             V++P+ HITV  D F 
Sbjct: 270 TNVSHPLRHITV-GDEFA 286


>AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 |
           chr1:4713969-4715158 FORWARD LENGTH=348
          Length = 348

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 121 LRQMPRVTTTGDGPNGKRIEGLLHKY-KGGQVCIVCVCHGSFLSPTEFVMHAGGKEVANP 179
           L  MP V T GDGPNG+R++G+L+KY KG +V I+C+CHGSFL+P EFV H GG +V  P
Sbjct: 276 LVDMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFLTPAEFVKHGGGGDVDRP 335

Query: 180 MTHITVCSDS 189
           + HI V + S
Sbjct: 336 LRHIVVNTSS 345


>AT1G69260.1 | Symbols: AFP1 | ABI five binding protein |
           chr1:26039314-26040570 FORWARD LENGTH=345
          Length = 345

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 1/89 (1%)

Query: 102 LERLEHVNPRLEGDDAMDILRQMPRVTTTGDGPNGKRIEGLLHKYKGGQ-VCIVCVCHGS 160
           L RL  V+  ++ +       +MP V T GDGPNGKR++G+L++Y  G+ V I+CVCHG 
Sbjct: 252 LRRLSSVDMNMKMEPQGKGKSEMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGD 311

Query: 161 FLSPTEFVMHAGGKEVANPMTHITVCSDS 189
           FLSP +FV HAGG  V +P+ HI V + S
Sbjct: 312 FLSPADFVKHAGGPHVDHPLRHIVVNTSS 340


>AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding protein
           2) family protein | chr3:385478-386437 REVERSE
           LENGTH=319
          Length = 319

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 49/81 (60%), Gaps = 10/81 (12%)

Query: 115 DDAMDILRQMPRVTTTGDGPNGKRIEGLLHKYKGG--QVCIVCVCHGSFLSPTEFVMHA- 171
           + A +IL  MP V+T   G +GKR+EG L+ Y G   +V IVCVCHGSFLSP EFV H  
Sbjct: 232 EKARNILEDMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAEFVRHGG 291

Query: 172 -------GGKEVANPMTHITV 185
                  GG  + NP+ HI V
Sbjct: 292 GTVSDDDGGDVMINPLRHIVV 312


>AT4G28910.3 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 123 QMPRVTTTGDGPNGKRIEGLLHKYKGGQVCIVCVCHGSFLSPTEFVMHA 171
            +P V+TTG GP+G+ I G+ ++Y   Q+ IVC CHGS +SP EFV HA
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHA 405


>AT4G28910.1 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 123 QMPRVTTTGDGPNGKRIEGLLHKYKGGQVCIVCVCHGSFLSPTEFVMHA 171
            +P V+TTG GP+G+ I G+ ++Y   Q+ IVC CHGS +SP EFV HA
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHA 405


>AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 123 QMPRVTTTGDGPNGKRIEGLLHKYKGGQVCIVCVCHGSFLSPTEFVMHA 171
            +P V+TTG GP+G+ I G+ ++Y   Q+ IVC CHGS +SP EFV HA
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHA 405