Miyakogusa Predicted Gene

Lj4g3v1719790.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1719790.1 Non Chatacterized Hit- tr|B9RLN3|B9RLN3_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,39.83,9e-17,seg,NULL,CUFF.49628.1
         (498 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G74220.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    81   2e-15
AT2G03630.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    69   8e-12
AT2G03630.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    69   1e-11

>AT1G74220.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: male gametophyte, flower, pollen tube;
           EXPRESSED DURING: L mature pollen stage, M germinated
           pollen stage, 4 anthesis; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT2G03630.1);
           Has 383 Blast hits to 347 proteins in 86 species: Archae
           - 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants -
           76; Viruses - 2; Other Eukaryotes - 136 (source: NCBI
           BLink). | chr1:27913099-27914134 REVERSE LENGTH=316
          Length = 316

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 108/259 (41%), Gaps = 51/259 (19%)

Query: 279 QTPPVQVMERPGESSQ-----------YVFPSHVFARNNTNAPGEWSTASNESLFSIYMG 327
           Q+PP QVMER   ++            Y  PSHVFAR  + AP EWST SNESLFSI+MG
Sbjct: 61  QSPPTQVMERSTNNTTTTTTSTPNTPPYRIPSHVFARTTSTAP-EWSTISNESLFSIHMG 119

Query: 328 NMSFSNELVCLKSCELDKP----------GGDNNTNTHNDPQ-NALPTQQQPPAPVNKFN 376
           N SF+      KS EL  P               +  HN  Q  A+    +   PV    
Sbjct: 120 NNSFTGGDY-FKSGELTFPQPPSPITSPLPSPLPSTPHNVNQGGAVGAAAEVKTPV---- 174

Query: 377 DISQRTAEMHE--ESSRLTEAKAAETMREVIMESSRTTENTSKKVERNSNSRNQSDGSTK 434
           DI ++ AE  +   +S+  E KAA ++REVIM +     N        S SR   + S K
Sbjct: 175 DIGKKAAETDKAYRASKEDEQKAAASIREVIMANEAANNNNKTNKLDRSVSRRSENLSVK 234

Query: 435 SYAFKTSTEGDK-----SVSSKSGRDXXX----XXXXXXXXXTPIADEQTPKSTTNAPTN 485
           S+AF      DK     S   K  R+                  +  E+ PK    AP  
Sbjct: 235 SFAFPVMGNADKGGLQGSTPEKKQRNPSQPETPKISTEAEGDVGLKKEEAPKPV--APKT 292

Query: 486 ----------RFLQCFACC 494
                     ++L CF CC
Sbjct: 293 EADRASDRNPKWLSCFPCC 311


>AT2G03630.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins
           in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7;
           Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes -
           21 (source: NCBI BLink). | chr2:1103205-1103963 FORWARD
           LENGTH=252
          Length = 252

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 276 PEIQTPPVQVMERP--GESSQYVFPSHVFARNNTNAPGEWSTASNESLFSIYMGNMSFSN 333
           PEI +PPVQVM+R   G+      PS VF R+ +N P EWS  SNESLFSI++GN SF+ 
Sbjct: 87  PEISSPPVQVMDRDNNGKYDPNRIPSSVFERSKSNVPAEWSCTSNESLFSIHLGNNSFTG 146

Query: 334 ELV-CLKSCELDKPG 347
                +KS EL K G
Sbjct: 147 YGGDLMKSGELYKSG 161


>AT2G03630.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: male
           gametophyte, pollen tube; EXPRESSED DURING: L mature
           pollen stage, M germinated pollen stage; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G74220.1); Has 87 Blast hits to 87 proteins in
           11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr2:1103205-1103863 FORWARD
           LENGTH=198
          Length = 198

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 48/75 (64%), Gaps = 3/75 (4%)

Query: 276 PEIQTPPVQVMERP--GESSQYVFPSHVFARNNTNAPGEWSTASNESLFSIYMGNMSFSN 333
           PEI +PPVQVM+R   G+      PS VF R+ +N P EWS  SNESLFSI++GN SF+ 
Sbjct: 87  PEISSPPVQVMDRDNNGKYDPNRIPSSVFERSKSNVPAEWSCTSNESLFSIHLGNNSFTG 146

Query: 334 ELV-CLKSCELDKPG 347
                +KS EL K G
Sbjct: 147 YGGDLMKSGELYKSG 161