Miyakogusa Predicted Gene
- Lj4g3v1719740.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1719740.2 Non Chatacterized Hit- tr|J3NEE5|J3NEE5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G2,31.42,3e-18,seg,NULL; coiled-coil,NULL,CUFF.49624.2
(498 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G08010.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 87 2e-17
AT5G61040.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 77 3e-14
>AT5G08010.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G61040.1); Has 5732 Blast hits to 4319 proteins
in 440 species: Archae - 66; Bacteria - 397; Metazoa -
2437; Fungi - 292; Plants - 238; Viruses - 35; Other
Eukaryotes - 2267 (source: NCBI BLink). |
chr5:2569606-2571613 FORWARD LENGTH=566
Length = 566
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 129/517 (24%), Positives = 199/517 (38%), Gaps = 123/517 (23%)
Query: 1 MDLWVVAAVAGAG-CEQAFKQWALDVDSVDGLLATELASIEGFDSEKVRC-------FRD 52
MDLW++AA A G + + + S + L +L S S VR F D
Sbjct: 1 MDLWLIAATAATGYITKHLRNVSKGKSSSEDLTNVKLESPRCLASNVVRVKKPKEENFED 60
Query: 53 CNESNVLSV---SNFSDVEDRNDRSSNIGANCGFLLPDLSVGELGSFVHNPGNKTFFKTE 109
C L + N VE ++ ++G + GSF GN+ F +
Sbjct: 61 CLNGETLDLYECGNAYGVEVASNNEEDLGYDDEI--------RSGSF----GNRAFLRRN 108
Query: 110 HWYGQXXXXXXXXXXXXXXXXXRPLNSLESCLMAQLCKAHAKMEQGV----SSSSSAVTK 165
+P SLE +M++L + ME+ + S +V++
Sbjct: 109 QC------------------PIKPF-SLEKSIMSRLHREKISMEEYMRSPFPSPCGSVSR 149
Query: 166 LFHVIDGSQIISRKDDDDDSCSALIGSEEYKLRGEADQVKDENELLGVPASPKVESINDA 225
V DG+ +IS+ D S QV + G+P
Sbjct: 150 PLLVTDGTNVISKNTGDSVS----------------QQVSE----CGIP---------QL 180
Query: 226 KKMKSDAGIEKSGILSSSNIAFTEKHIHSQHDAIFLFSLGISFGIITSILANNREKDKLR 285
+K+KS K G+ + +++ + +D + + +GIS GI++S +AN E +K+R
Sbjct: 181 RKLKSSLLYAKRGVGDAKSVSRRSDNGTGSNDPVLVLCVGISIGIMSSFVANQTELNKVR 240
Query: 286 ELLKQTEILAQDLQEELEMKDSMTVKELQSENYGSQDTCDYSFRDKELSGFFPEKHTDNS 345
KQTE L KEL+ + + + CD EK +NS
Sbjct: 241 AESKQTENLG---------------KELEDDIHDGEKQCD-------------EKTAENS 272
Query: 346 SIIDCKKFYDQKXXXXXXXXXXXXXXXXXXXXRLGFKMNXXXXXXXXXXXAEDTDFVADF 405
I K + F++ + DF +F
Sbjct: 273 ESIS--KIEAELEAELERLEINMISSNIETKLSDVFEL--------------EPDFEVEF 316
Query: 406 SQNELPTDMISGNDFVHPKLN-EDANNTKSFPVNYAVSPHELSLRLHEVIQSRLEKRVQE 464
+Q EL D + F N E ++N+ NY VSP ELSLRL VI S EKR++E
Sbjct: 317 AQGELRDDQVERQRFDETVSNQERSSNSTPESGNYIVSPRELSLRLLGVINSCYEKRIKE 376
Query: 465 LEVALQYSQRKLQ--FVESEH-ESPAAYIDTYEDPMK 498
LE ALQ SQRK++ +ESE + P + I + MK
Sbjct: 377 LENALQESQRKVEQLVIESEEKKKPLSRIWETHEEMK 413
>AT5G61040.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:24562431-24564395
REVERSE LENGTH=590
Length = 590
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 398 DTDFVADFSQNELPTDMISGNDFVHPKLNED-ANNTKSFPVNYAVSPHELSLRLHEVIQS 456
+ D +F+Q EL D + G + N+D + N+ NYAVSP ELSLRLH+VI S
Sbjct: 336 EPDCEVEFAQGELRADRVKGKRLDETESNQDPSGNSTPESGNYAVSPRELSLRLHKVINS 395
Query: 457 RLEKRVQELEVALQYSQRKLQFVESEHES 485
RLEKR+ ELE ALQ SQRK++ + E ES
Sbjct: 396 RLEKRIGELETALQESQRKVEQLVMESES 424
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 141/336 (41%), Gaps = 63/336 (18%)
Query: 1 MDLWVVAAVAGAGCEQAFKQWALDVDSVDGLLATELASIE-----GFDSEKVRCFRDCNE 55
MD+W++AA A G KQ D +L + ++ G ++ + NE
Sbjct: 1 MDVWLIAATAATGY--IAKQLQNVTKGKDNVLESSSEDVKPESPPGCLLSRLVRVKKANE 58
Query: 56 SNVLSVSNFSDVEDRNDRSSNIGANCGF-----------LLPDLSVGELGSFVHNPGNKT 104
+ SD + N +S G + G+ L+P+ ELG++ GN
Sbjct: 59 NKFGDEKMLSDGD--NPDASTSGESSGYYETNHSDTLFGLMPEFPEMELGTW-KTSGN-- 113
Query: 105 FFKTEHWYGQXXXXXXXXXXXXXXXXXRPLNSLESCLMAQLCKAHAKMEQGVS----SSS 160
G +PL+S++SCLM++ + +E ++ S
Sbjct: 114 ------LVGDTQLNSSFRRNQRFRRLIKPLSSMDSCLMSRFHREQMTIEDYMTSPFPSPH 167
Query: 161 SAVTKLFHVIDGSQIISRKDDDDDSCSALIGSEEYKLRGEADQVKDENELLGVPASPKVE 220
++V++ V DG+++IS+ D S I E K GVP VE
Sbjct: 168 ASVSRPLLVTDGTRVISKSAADSLWLSQHIVLSEDKATLSC----------GVPG---VE 214
Query: 221 SINDAKKMKSDAGIEKSGILSSSNIAFTEKHIHSQHDAIFLFSLGISFGIITSILANNRE 280
S IE+ G S + H DA L +GIS GI++S +A+ E
Sbjct: 215 S-----------SIERVGNEKSKS------RKHGLGDATMLLQIGISIGIMSSFMASQAE 257
Query: 281 KDKLRELLKQTEILAQDLQEELEMKDSMTVKELQSE 316
K+++ LKQTE L DL++ELEMKD++ VKE+ E
Sbjct: 258 VSKVKQELKQTENLVHDLEDELEMKDTLIVKEIDIE 293