Miyakogusa Predicted Gene

Lj4g3v1719740.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1719740.1 Non Chatacterized Hit- tr|J3NEE5|J3NEE5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G2,31.42,5e-18,seg,NULL; coiled-coil,NULL,CUFF.49624.1
         (539 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61040.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    99   8e-21
AT5G08010.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    83   5e-16

>AT5G61040.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G08010.1); Has 1807 Blast hits to 1807 proteins
           in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
           Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
           - 339 (source: NCBI BLink). | chr5:24562431-24564395
           REVERSE LENGTH=590
          Length = 590

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 153/358 (42%), Gaps = 72/358 (20%)

Query: 173 RPLNSLESCLMAQLCKAHAKMEQGVS----SSSSAVTKLFHVIDGSQIISRKDDDDDSCS 228
           +PL+S++SCLM++  +    +E  ++    S  ++V++   V DG+++IS+   D    S
Sbjct: 135 KPLSSMDSCLMSRFHREQMTIEDYMTSPFPSPHASVSRPLLVTDGTRVISKSAADSLWLS 194

Query: 229 ALIGSEEYKLRGEADQVKDENELLGVPASPKVESINDAKKMKSDAGIEKSGILSSSNIAF 288
             I   E K               GVP    VES            IE+ G   S +   
Sbjct: 195 QHIVLSEDKATLSC----------GVPG---VES-----------SIERVGNEKSKS--- 227

Query: 289 TEKHIHSQHDAIFLFSLGISFGIITSILANNREKDKLRELLKQTEILAQDLQEELEMKDS 348
                H   DA  L  +GIS GI++S +A+  E  K+++ LKQTE L  DL++ELEMKD+
Sbjct: 228 ---RKHGLGDATMLLQIGISIGIMSSFMASQAEVSKVKQELKQTENLVHDLEDELEMKDT 284

Query: 349 MTVKELQSENYGSQDTCDYSFRDKELSGFFPEKHTDNSSIIDCKKFYDQKXXXXXXXXXX 408
           + VKE+  E          +   +  +     +   NSS I+ +                
Sbjct: 285 LIVKEIDIEKAAESSESISNIEAELEAELERLEINMNSSNIETR---------------L 329

Query: 409 XXXXXXXXXXRLGFKMNXXXXXXXXXXXAEDTDFVADFSQNELPTDMISGNDFVHPKLNE 468
                      + F               ++T+   D S N  P    SGN  V P+   
Sbjct: 330 SDIIEMEPDCEVEFAQGELRADRVKGKRLDETESNQDPSGNSTPE---SGNYAVSPR--- 383

Query: 469 DANNTKSFPVNYAVSPHELSLRLHEVIQSRLEKRVQELEVALQYSQRKLQFVESEHES 526
                            ELSLRLH+VI SRLEKR+ ELE ALQ SQRK++ +  E ES
Sbjct: 384 -----------------ELSLRLHKVINSRLEKRIGELETALQESQRKVEQLVMESES 424


>AT5G08010.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G61040.1); Has 5732 Blast hits to 4319 proteins
           in 440 species: Archae - 66; Bacteria - 397; Metazoa -
           2437; Fungi - 292; Plants - 238; Viruses - 35; Other
           Eukaryotes - 2267 (source: NCBI BLink). |
           chr5:2569606-2571613 FORWARD LENGTH=566
          Length = 566

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 155/369 (42%), Gaps = 82/369 (22%)

Query: 177 SLESCLMAQLCKAHAKMEQGVSSS----SSAVTKLFHVIDGSQIISRKDDDDDSCSALIG 232
           SLE  +M++L +    ME+ + S       +V++   V DG+ +IS+   D  S      
Sbjct: 116 SLEKSIMSRLHREKISMEEYMRSPFPSPCGSVSRPLLVTDGTNVISKNTGDSVS------ 169

Query: 233 SEEYKLRGEADQVKDENELLGVPASPKVESINDAKKMKSDAGIEKSGILSSSNIAFTEKH 292
                      QV +     G+P           +K+KS     K G+  + +++    +
Sbjct: 170 ----------QQVSE----CGIP---------QLRKLKSSLLYAKRGVGDAKSVSRRSDN 206

Query: 293 IHSQHDAIFLFSLGISFGIITSILANNREKDKLRELLKQTEILAQDLQEELEMKDSMTVK 352
               +D + +  +GIS GI++S +AN  E +K+R   KQTE L                K
Sbjct: 207 GTGSNDPVLVLCVGISIGIMSSFVANQTELNKVRAESKQTENLG---------------K 251

Query: 353 ELQSENYGSQDTCDYSFRDKELSGFFPEKHTDNSSIIDCKKFYDQKXXXXXXXXXXXXXX 412
           EL+ + +  +  CD             EK  +NS  I   K   +               
Sbjct: 252 ELEDDIHDGEKQCD-------------EKTAENSESIS--KIEAELEAELERLEINMISS 296

Query: 413 XXXXXXRLGFKMNXXXXXXXXXXXAEDTDFVADFSQNELPTDMISGNDFVHPKLN-EDAN 471
                    F++              + DF  +F+Q EL  D +    F     N E ++
Sbjct: 297 NIETKLSDVFEL--------------EPDFEVEFAQGELRDDQVERQRFDETVSNQERSS 342

Query: 472 NTKSFPVNYAVSPHELSLRLHEVIQSRLEKRVQELEVALQYSQRKLQ--FVESEH-ESPA 528
           N+     NY VSP ELSLRL  VI S  EKR++ELE ALQ SQRK++   +ESE  + P 
Sbjct: 343 NSTPESGNYIVSPRELSLRLLGVINSCYEKRIKELENALQESQRKVEQLVIESEEKKKPL 402

Query: 529 AYI-DTYED 536
           + I +T+E+
Sbjct: 403 SRIWETHEE 411