Miyakogusa Predicted Gene

Lj4g3v1709660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1709660.1 Non Chatacterized Hit- tr|C6TG10|C6TG10_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,78.95,8e-18,Tmemb_40,Uncharacterised protein family,
transmembrane-40; INTEGRAL MEMBRANE PROTEIN GPR175
[SOURCE,CUFF.49616.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05010.1 | Symbols:  | Protein of unknown function, transmemb...   238   1e-63
AT5G27210.1 | Symbols:  | Protein of unknown function, transmemb...   226   6e-60

>AT3G05010.1 | Symbols:  | Protein of unknown function,
           transmembrane-40 | chr3:1389603-1391462 FORWARD
           LENGTH=300
          Length = 300

 Score =  238 bits (608), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 111/183 (60%), Positives = 140/183 (76%)

Query: 1   MLCLEISLMAFLLKDNYMNAMEALAHTFIVSGIIVFVDILLKAIYVFGFGVPLFNNDVGS 60
           ML LE+SL+AFL + NY +  EAL  TF++SG+++ +D+LLKAIY+FGFGVPLF ++   
Sbjct: 118 MLFLEVSLVAFLFQGNYASGAEALTRTFLISGLVIGLDLLLKAIYLFGFGVPLFIDNNEH 177

Query: 61  TDTIKWCLWIVHKLLLAAAYGFILFVHFSKWREKLPPRPAFYNYVVVMFVFSAVTLFACG 120
               KW LW++HKLLLA  YG I F++ SKWRE+LP RPAFY Y+ VM   + ++LFAC 
Sbjct: 178 IHKFKWGLWVIHKLLLAGIYGMIFFMYNSKWRERLPARPAFYKYITVMLALNGLSLFACA 237

Query: 121 LSGIGAGLGSWLYNLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDA 180
           L+  GA  G WLY +T +CYH+ YLP LYVTFLADFFQEED  L+N YYSEMKDAGFFDA
Sbjct: 238 LTANGAHFGLWLYGITSVCYHAFYLPLLYVTFLADFFQEEDLNLENVYYSEMKDAGFFDA 297

Query: 181 EWE 183
           +WE
Sbjct: 298 DWE 300


>AT5G27210.1 | Symbols:  | Protein of unknown function,
           transmembrane-40 | chr5:9572333-9574075 REVERSE
           LENGTH=297
          Length = 297

 Score =  226 bits (576), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 106/183 (57%), Positives = 137/183 (74%)

Query: 1   MLCLEISLMAFLLKDNYMNAMEALAHTFIVSGIIVFVDILLKAIYVFGFGVPLFNNDVGS 60
           ML LE+SL+AFL + NY +  EAL  TF++SG IV +D+LLKAI++FGFGVPLF ++  +
Sbjct: 115 MLFLEVSLVAFLFQGNYASGAEALTRTFLISGFIVALDLLLKAIFLFGFGVPLFIDNNEN 174

Query: 61  TDTIKWCLWIVHKLLLAAAYGFILFVHFSKWREKLPPRPAFYNYVVVMFVFSAVTLFACG 120
             T KW LWI+HKLLL   YG +  ++ S+WREKLP RPAFYNY+++MF   ++ L A  
Sbjct: 175 GKTFKWGLWIIHKLLLTGVYGMVFLMYNSRWREKLPARPAFYNYIIIMFALYSLYLVASA 234

Query: 121 LSGIGAGLGSWLYNLTVLCYHSLYLPFLYVTFLADFFQEEDFLLDNAYYSEMKDAGFFDA 180
            +   A  G WLY +  +CYH+LYLP LY+TFLADFFQEED  L+N YYSEMKDAGFFD+
Sbjct: 235 FTANNAHFGFWLYGIMSVCYHALYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFDS 294

Query: 181 EWE 183
           +WE
Sbjct: 295 DWE 297