Miyakogusa Predicted Gene

Lj4g3v1685390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1685390.1 Non Chatacterized Hit- tr|D7MVB0|D7MVB0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,61.54,0.000000003,seg,NULL,CUFF.49638.1
         (143 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61530.1 | Symbols:  | small G protein family protein / RhoGA...   176   5e-45
AT5G61530.2 | Symbols:  | small G protein family protein / RhoGA...   176   6e-45
AT5G61530.3 | Symbols:  | small G protein family protein / RhoGA...   143   3e-35

>AT5G61530.1 | Symbols:  | small G protein family protein / RhoGAP
           family protein | chr5:24742630-24744586 FORWARD
           LENGTH=376
          Length = 376

 Score =  176 bits (446), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 104/135 (77%)

Query: 1   MPSITSPQWQEKASGFFSSSGVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGSIVKSR 60
           MPS+ S QWQE+ SGFFSSSG KL+EA ++AG+FVGEV KD K NVA+VA RVGS+ KSR
Sbjct: 1   MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query: 61  WTLLQQPSTRHAVQDKLISAAATTGSFLRRGISGTXXXXXXXXXXXXXXXXITAQKSKTI 120
           W +LQQP+TRHAVQ+ LI+AAATTG+F+R+GI+ T                 TAQKSKTI
Sbjct: 61  WAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVAKND 135
           LTDIERWQKGVA +D
Sbjct: 121 LTDIERWQKGVASSD 135


>AT5G61530.2 | Symbols:  | small G protein family protein / RhoGAP
           family protein | chr5:24742630-24744586 FORWARD
           LENGTH=367
          Length = 367

 Score =  176 bits (445), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 104/135 (77%)

Query: 1   MPSITSPQWQEKASGFFSSSGVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGSIVKSR 60
           MPS+ S QWQE+ SGFFSSSG KL+EA ++AG+FVGEV KD K NVA+VA RVGS+ KSR
Sbjct: 1   MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query: 61  WTLLQQPSTRHAVQDKLISAAATTGSFLRRGISGTXXXXXXXXXXXXXXXXITAQKSKTI 120
           W +LQQP+TRHAVQ+ LI+AAATTG+F+R+GI+ T                 TAQKSKTI
Sbjct: 61  WAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVAKND 135
           LTDIERWQKGVA +D
Sbjct: 121 LTDIERWQKGVASSD 135


>AT5G61530.3 | Symbols:  | small G protein family protein / RhoGAP
           family protein | chr5:24742405-24744586 FORWARD
           LENGTH=376
          Length = 376

 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 87/115 (75%)

Query: 21  GVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGSIVKSRWTLLQQPSTRHAVQDKLISA 80
           G KL+EA ++AG+FVGEV KD K NVA+VA RVGS+ KSRW +LQQP+TRHAVQ+ LI+A
Sbjct: 21  GTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITA 80

Query: 81  AATTGSFLRRGISGTXXXXXXXXXXXXXXXXITAQKSKTILTDIERWQKGVAKND 135
           AATTG+F+R+GI+ T                 TAQKSKTILTDIERWQKGVA +D
Sbjct: 81  AATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSD 135