Miyakogusa Predicted Gene

Lj4g3v1684380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1684380.1 tr|F2EID4|F2EID4_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,44.12,3e-18,seg,NULL,CUFF.49601.1
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   202   3e-52

>AT5G07950.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:2540530-2542047 REVERSE LENGTH=303
          Length = 303

 Score =  202 bits (514), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 117/272 (43%), Positives = 158/272 (58%), Gaps = 6/272 (2%)

Query: 51  LRLWRQAAQRNLRNRWTQLASYKDQWSSISSAARSHATALVNSHLSIRYMPSVKLGVLSD 110
           +RLWR AAQRNLRN+W+ L++ + QW    SA RSHAT LVNS+LS +YMP ++LGVLSD
Sbjct: 35  MRLWRPAAQRNLRNQWSNLSNCRQQWIVACSAGRSHATLLVNSYLSQKYMPMMELGVLSD 94

Query: 111 MPNIRERACFXXXXXXXXXXXXXXXSYKEXXXXXXXXXXXXRLMKCFFKGSNCSSLLQFS 170
           M +I ++A                 SYKE            R ++C+ K S   SL+QFS
Sbjct: 95  MFDIDKKALKKLFTQQSSYRIKLLSSYKEMVAVVVEMVNASRSLRCYTKLST-GSLIQFS 153

Query: 171 CYSEDQXXXXXXXXXXXIPVFAFLPISSHDKLAEELVQMFIXXXXXXXXXXXXXMSVGND 230
              ED            IPVF F  +S+ +K+AEELV+MF              +S+  +
Sbjct: 154 GTKED---SNDAGDCGGIPVFNFWNVSAFEKMAEELVEMFKREVMLKRLLIMELISLSTE 210

Query: 231 PSQVNQLSWSAQLYNDEFKDLRDCNLFSED--GPVPPRLKDGKSDMVALKFDNQPSPEVL 288
             Q    SWS +LY+ EF  L  C+L+S +   PV PR+KD      ++   NQP+ E+L
Sbjct: 211 VPQPINNSWSDELYHGEFDHLTKCSLYSMEVAKPVLPRVKDYNIGSSSISHTNQPTAEIL 270

Query: 289 QVYLTTWLAELNIDTFRVNEIFAVVGEEMHVS 320
           Q+YLTTWLAE+NIDT RV+EI A+VGEE+ V+
Sbjct: 271 QIYLTTWLAEVNIDTHRVDEILALVGEEIRVT 302