Miyakogusa Predicted Gene
- Lj4g3v1684360.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1684360.2 Non Chatacterized Hit- tr|K4AIQ9|K4AIQ9_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica ,35.91,9e-19,
,CUFF.49603.2
(365 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 216 1e-56
AT1G13880.1 | Symbols: | ELM2 domain-containing protein | chr1:... 199 2e-51
AT2G03470.1 | Symbols: | ELM2 domain-containing protein | chr2:... 198 5e-51
AT2G03470.2 | Symbols: | ELM2 domain-containing protein | chr2:... 197 7e-51
AT4G11400.1 | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 do... 113 2e-25
AT5G04110.1 | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114... 112 3e-25
AT2G46040.1 | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2 do... 73 4e-13
>AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: ELM2
domain-containing protein (TAIR:AT2G03470.1); Has 161
Blast hits to 161 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:9185620-9187213 FORWARD LENGTH=493
Length = 493
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/354 (39%), Positives = 188/354 (53%), Gaps = 30/354 (8%)
Query: 1 MVQKRPFDTEEILEVSFKHPKQEGHKNQFMSFEESVFPEDGCVPRTSVEYPKGAV---QF 57
M KRPF+ E+ E+ KH +Q + ++ FEE V P +T +G + Q
Sbjct: 1 MGFKRPFEDEKFHELPLKHSRQLDYNDKSTQFEE-VSPHHAGFQKTVATVNEGNLCKSQG 59
Query: 58 ETSFPG------------GFSVSSWASSDTSEDVQSESPINLPFDLEYFNPERPTRTLVR 105
S G G + + DT + P +YF + P R
Sbjct: 60 GESSEGDMFDEESNYVYPGHDMDDTFTWDT-QGCGGRDATYSPHSGKYFELDIPPRVFAP 118
Query: 106 YENSYSMLFKHPPTTPVPVGPDHQADIPAWDSSATSRPNPDAAGDN--------KDEEGL 157
E Y +L VP+GP HQA+IP W+ S T N + +G + D E L
Sbjct: 119 VETFYYLLLDQRAKKQVPIGPGHQAEIPEWEGSQTG--NIETSGMSVQNHISGCADGEKL 176
Query: 158 MGTCIIPMPQMKLSIYDNEEVGKGRTDDCSCGDRGSVRCVRQHIVEAREELVKSIGKKIF 217
GT +IPMP + + ++ VGKGR C C DR SVRCV QHI EAREELVK+ G + F
Sbjct: 177 FGTSVIPMPGLTTVAHIDDIVGKGRKF-CVCRDRDSVRCVCQHIKEAREELVKTFGNETF 235
Query: 218 ADLGLADMGEQVADKWSAEEEQLFLKVIFNSPVTLDKTFWDYFPIAFPLKTKREMVSYYF 277
+LGL +MGE+ A KWS E+ QLF +V++++PVTL + FW + AF +T++E+VS+YF
Sbjct: 236 KELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSRTQKEIVSFYF 295
Query: 278 NVFMLRRRGEQNRNSLLAIDSDDDEWQGS-GDGNGIE-TGNDDEDCVTESPESQ 329
NVF+LRRR QNR +L IDSDDDEW G G +G D+ED ESP Q
Sbjct: 296 NVFVLRRRAIQNRAFILDIDSDDDEWHGCYGGSSGTRYVEEDEEDSAIESPLHQ 349
>AT1G13880.1 | Symbols: | ELM2 domain-containing protein |
chr1:4749603-4750967 FORWARD LENGTH=424
Length = 424
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/335 (37%), Positives = 185/335 (55%), Gaps = 30/335 (8%)
Query: 1 MVQKRPFDTEEILEVSFKHPKQEGHKNQFMSFEESVFPEDGCVPRTSVEYPKGAVQFETS 60
M KR FD E++ E++ K+ +Q + N+ +E G R S+E P G V ++ S
Sbjct: 1 MGFKRTFDAEDVQELNVKNGRQISYCNKLAKLDE------GVPYRLSLEKP-GVVGYDIS 53
Query: 61 FPGGFSVS-------------SWASSDTSE-DVQSESPINLPFDLEYFNPERPTRTLVRY 106
G+ SW ++ SE D QS + I E + P R +
Sbjct: 54 DLYGYKCEDNVDKGFETNAPFSWITTGLSEEDSQSGATIQSTISHESPESDIPWRPVCSG 113
Query: 107 ENSYSMLFKHPPTTPVPVGPDHQADIPAWDSSATSRPNPDAAGDNKDEEGLMGTCIIPMP 166
E P T VP+G D+QADIP + + G DEE + G C+IPMP
Sbjct: 114 EEDGYWCPISPRKT-VPIGSDYQADIP--ECVKEEANDQSGQGVGYDEEQVTGKCVIPMP 170
Query: 167 QMKLSIYDNEEVGKGRTDDCSCGDRGSVRCVRQHIVEAREELVKSIGKKIFADLGLADMG 226
+ + ++GKGR + C C D+GS+RCV+QHI+E RE+L +IG D+GL +MG
Sbjct: 171 DCETEVC---KIGKGRKE-CICLDKGSIRCVQQHIMENREDLFATIGYDRCLDIGLCEMG 226
Query: 227 EQVADKWSAEEEQLFLKVIFNSPVTLDKTFWDYFPIAFPLKTKREMVSYYFNVFMLRRRG 286
E+VA + + +EE LF ++++++PV++D+ FW + AFP +T +E+VSYYFNVF+LRRR
Sbjct: 227 EEVAARLTEDEEDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTMKEIVSYYFNVFILRRRA 286
Query: 287 EQNRNSLLAIDSDDDEWQGSGDGN--GIETGNDDE 319
QNR+ L +DSDDDEWQ D G ET +DD+
Sbjct: 287 IQNRSKSLDVDSDDDEWQVEYDNTFYGAETPSDDK 321
>AT2G03470.1 | Symbols: | ELM2 domain-containing protein |
chr2:1045694-1047130 REVERSE LENGTH=450
Length = 450
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 171/314 (54%), Gaps = 26/314 (8%)
Query: 1 MVQKRPFDTEEILEVSFKHPKQEGHKNQFMSFEESVFPEDGCVPRTS---VEYPKGAVQF 57
M KRP+D EE+ + + KH +Q +KN F+E++ + + + VE G +
Sbjct: 1 MGLKRPYDAEEMQKCNAKHARQLSYKNH-NQFDEAIPYHHASMEKKTNVLVEDLIGLCEN 59
Query: 58 ET------SFPGGFSVSSWASSDTSEDVQSESPINLPFDLEYFNPERPTRTLVRYENSYS 111
T GF + D+ V ++S ++ F T E+ Y+
Sbjct: 60 PTWTNDANHVDKGFETTGLCQEDSQSGVTTQSDLSHQSSGSDF-------TWKPVEDVYT 112
Query: 112 MLFKHPPTTPVPVGPDHQADIPAWDSSATSRPNPDAAGDNKDEEG-LMGTCIIPMPQMKL 170
L PP V VG +HQADIP + + A +D EG LM C+IPM L
Sbjct: 113 CLMNQPPRKQVLVGSNHQADIPEFVKEEI--LDQSEARTKEDLEGKLMRKCVIPMSDSDL 170
Query: 171 SIYDNEEVGKGRTDDCSCGDRGSVRCVRQHIVEAREELVKSIGKKIFADLGLADMGEQVA 230
G+GR + C C D+GS+RCVR+HI+EARE LV++IG + F +LGL +MGE+VA
Sbjct: 171 C-----GTGQGRKE-CLCLDKGSIRCVRRHIIEARESLVETIGYERFMELGLCEMGEEVA 224
Query: 231 DKWSAEEEQLFLKVIFNSPVTLDKTFWDYFPIAFPLKTKREMVSYYFNVFMLRRRGEQNR 290
W+ EEE LF KV++++P + + FW FP +T +E+VSYYFNVF+LRRRG QNR
Sbjct: 225 SLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSRTMKELVSYYFNVFILRRRGIQNR 284
Query: 291 NSLLAIDSDDDEWQ 304
L +DSDDDEWQ
Sbjct: 285 FKALDVDSDDDEWQ 298
>AT2G03470.2 | Symbols: | ELM2 domain-containing protein |
chr2:1045694-1047130 REVERSE LENGTH=449
Length = 449
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 122/313 (38%), Positives = 172/313 (54%), Gaps = 25/313 (7%)
Query: 1 MVQKRPFDTEEILEVSFKHPKQEGHKNQFMSFEESV-FPEDGCVPRTSV-EYPKGAVQFE 58
M KRP+D EE+ + + KH +Q +KN F+E++ + +T+V E G +
Sbjct: 1 MGLKRPYDAEEMQKCNAKHARQLSYKNH-NQFDEAIPYHHASMEKKTNVLEDLIGLCENP 59
Query: 59 T------SFPGGFSVSSWASSDTSEDVQSESPINLPFDLEYFNPERPTRTLVRYENSYSM 112
T GF + D+ V ++S ++ F T E+ Y+
Sbjct: 60 TWTNDANHVDKGFETTGLCQEDSQSGVTTQSDLSHQSSGSDF-------TWKPVEDVYTC 112
Query: 113 LFKHPPTTPVPVGPDHQADIPAWDSSATSRPNPDAAGDNKDEEG-LMGTCIIPMPQMKLS 171
L PP V VG +HQADIP + + A +D EG LM C+IPM L
Sbjct: 113 LMNQPPRKQVLVGSNHQADIPEFVKEEI--LDQSEARTKEDLEGKLMRKCVIPMSDSDLC 170
Query: 172 IYDNEEVGKGRTDDCSCGDRGSVRCVRQHIVEAREELVKSIGKKIFADLGLADMGEQVAD 231
G+GR + C C D+GS+RCVR+HI+EARE LV++IG + F +LGL +MGE+VA
Sbjct: 171 -----GTGQGRKE-CLCLDKGSIRCVRRHIIEARESLVETIGYERFMELGLCEMGEEVAS 224
Query: 232 KWSAEEEQLFLKVIFNSPVTLDKTFWDYFPIAFPLKTKREMVSYYFNVFMLRRRGEQNRN 291
W+ EEE LF KV++++P + + FW FP +T +E+VSYYFNVF+LRRRG QNR
Sbjct: 225 LWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSRTMKELVSYYFNVFILRRRGIQNRF 284
Query: 292 SLLAIDSDDDEWQ 304
L +DSDDDEWQ
Sbjct: 285 KALDVDSDDDEWQ 297
>AT4G11400.1 | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2
domain protein | chr4:6938717-6940539 FORWARD LENGTH=573
Length = 573
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 100/196 (51%), Gaps = 20/196 (10%)
Query: 118 PTTPVPVGPDHQADIPAWDSSATSRPNPDAAGDNKDEEGLMGTCIIPMPQMKLSI---YD 174
P + VG HQA + W S D+K +GT I P P+ ++
Sbjct: 370 PRRCIKVGHQHQAQVDEWTESGVD-------SDSK----WLGTRIWP-PENSEALDQTLG 417
Query: 175 NEEVGKGRTDDCSCGDRGSVRCVRQHIVEAREELVKSIGKKIFADLGLADMGEQVADKWS 234
N+ VGKGR D CSC G V C R HI E R EL + +G F MGE+V +W+
Sbjct: 418 NDLVGKGRPDSCSCELSGFVECTRLHIAEKRMELKRELGDDFF-HWRFNQMGEEVCLRWT 476
Query: 235 AEEEQLFLKVIFNSPVTLDKTFWDYFPIAFPLKTKREMVSYYFNVFMLRRRGEQNRNSLL 294
EEE+ F +I P ++FW FP K + E+VSYYFNVF++ RR QNR +
Sbjct: 477 EEEEKRFKDMIIADP----QSFWTNAAKNFPKKKREELVSYYFNVFLINRRRYQNRVTPK 532
Query: 295 AIDSDDDEWQGSGDGN 310
+IDSDD+ GS G+
Sbjct: 533 SIDSDDEGAFGSVGGS 548
>AT5G04110.1 | Symbols: GYRB3 | DNA GYRASE B3 | chr5:1110757-1114112
REVERSE LENGTH=546
Length = 546
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 122 VPVGPDHQADIPAWDSSATSRPNPDAAGDNKDEEGLMGTCIIPMPQMKLSIYDNEEVGKG 181
+P+GP QA+IP W + + GD+ L GT + P +K +++ +++VG+G
Sbjct: 361 IPIGPRFQAEIPVWIAPTKKGKFYGSPGDSNTLRWL-GTGVWPTYSLKKTVH-SKKVGEG 418
Query: 182 RTDDCSCGDRGSVRCVRQHIVEAREELVKSIGKKIFADLGLADMGEQVADK-WSAEEEQL 240
R+D CSC S C+++H EA+E L K I + F+ MGE++ K W+A+EE+
Sbjct: 419 RSDSCSCASPRSTNCIKRHKKEAQELLEKEINRA-FSTWEFDQMGEEIVLKSWTAKEERR 477
Query: 241 FLKVIFNSPVTLDKTFWDYFPIAFPLKTKREMVSYYFNVFMLRR 284
F ++ +P++ FW++ AFP K+K++++SYY+NVF+++R
Sbjct: 478 FEALVKKNPLSSSDGFWEFASNAFPQKSKKDLLSYYYNVFLIKR 521
>AT2G46040.1 | Symbols: | ARID/BRIGHT DNA-binding domain;ELM2
domain protein | chr2:18935684-18937807 REVERSE
LENGTH=562
Length = 562
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 16/182 (8%)
Query: 124 VGPDHQADIPAWDSSATSRPNPDAAGDNKDEEGLMGTCIIPMPQMKLS---IYDNEEVGK 180
VG QA +P W P D+ +GT I P+ + + + + + +GK
Sbjct: 362 VGSKFQAKVPEWTGIT---PESDSK--------WLGTRIWPLTKEQTKANLLIERDRIGK 410
Query: 181 GRTDDCSCGDRGSVRCVRQHIVEAREELVKSIGKKIFADLGLADMGEQVADKWSAEEEQL 240
GR D C C + GS+ CV+ HI R++L +G + MGE W+ E +
Sbjct: 411 GRQDPCGCHNPGSIECVKFHITAKRDKLKLELGPAFYM-WCFDVMGECTLQYWTDLELKK 469
Query: 241 FLKVIFNSPVTLDKTFWDYFPIAFPLKTKREMVSYYFNVFMLRRRGEQNRNSLLAIDSDD 300
+K + +SP +L F + P K++ ++VSY++NV +L+ R Q+R + IDSD
Sbjct: 470 -IKSLMSSPPSLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYRASQSRITPHDIDSDT 528
Query: 301 DE 302
D+
Sbjct: 529 DQ 530