Miyakogusa Predicted Gene

Lj4g3v1683300.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1683300.1 tr|Q6X9T2|Q6X9T2_HORVD SNAP25-like protein C
(Fragment) OS=Hordeum vulgare var. distichum PE=4
SV=1,52.38,1e-18,Helical region found in SNAREs,Target SNARE
coiled-coil domain; T_SNARE,Target SNARE coiled-coil dom,CUFF.49596.1
         (305 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61210.1 | Symbols: SNAP33, ATSNAP33, SNP33, ATSNAP33B | solu...   292   2e-79
AT1G13890.1 | Symbols: SNAP30, ATSNAP30 | soluble N-ethylmaleimi...   224   8e-59
AT5G07880.1 | Symbols: SNAP29, ATSNAP29 | synaptosomal-associate...   185   3e-47

>AT5G61210.1 | Symbols: SNAP33, ATSNAP33, SNP33, ATSNAP33B | soluble
           N-ethylmaleimide-sensitive factor adaptor protein 33 |
           chr5:24624027-24625366 FORWARD LENGTH=300
          Length = 300

 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 157/282 (55%), Positives = 193/282 (68%), Gaps = 4/282 (1%)

Query: 25  SGSNPFDSDDEGNDNKKYNSSRKTSSERALATLEVNTNPFDDVDDTKKPSSSLYAAPSAD 84
           S  NPFDSDDE ++    N S++T+SE +LA +   TNPF      K  SSS   +  ++
Sbjct: 22  SKPNPFDSDDESDNKHTLNPSKRTTSEPSLADM---TNPFGGERVQKGDSSSSKQSLFSN 78

Query: 85  -RNRYRNDFRESGGVENQSVQELESYAVYKAEETTKSVNNCLKIAENIREDATKTLVTLH 143
            + +Y+N+FR+SGG+ENQSVQELE YAVYKAEETTKSV  CLK+AE+IR DAT+TLV LH
Sbjct: 79  SKYQYKNNFRDSGGIENQSVQELEGYAVYKAEETTKSVQGCLKVAEDIRSDATRTLVMLH 138

Query: 144 QQGEQITRSHYVAADIDHDXXXXXXXXXXXXXXXXKTWKPKKTRAIRGPVIFGDNPVSRQ 203
            QGEQITR+H+ A +IDHD                KTWKPKKTR I GPV+  D+  +R+
Sbjct: 139 DQGEQITRTHHKAVEIDHDLSRGEKLLGSLGGMFSKTWKPKKTRPINGPVVTRDDSPTRR 198

Query: 204 ANHLEQREKLGLTSAPRGQTKMRTPPHESSTALQKVEFEKGKQXXXXXXXXXXXXXXXXM 263
            NHLE+REKLGL SAPRGQ++ R P  ES+ A Q+VE EK KQ                M
Sbjct: 199 VNHLEKREKLGLNSAPRGQSRTREPLPESADAYQRVEMEKAKQDDGLSDLSDILGELKNM 258

Query: 264 AIDMGSEIERHNKALSHLDDDVEELNFRVKGANQRGRRLLGK 305
           A+DMGSEIE+ NK L HL DDV+ELNFRV+ +NQRGRRLLGK
Sbjct: 259 AVDMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQRGRRLLGK 300


>AT1G13890.1 | Symbols: SNAP30, ATSNAP30 | soluble
           N-ethylmaleimide-sensitive factor adaptor protein 30 |
           chr1:4751581-4752844 FORWARD LENGTH=263
          Length = 263

 Score =  224 bits (570), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 127/280 (45%), Positives = 161/280 (57%), Gaps = 25/280 (8%)

Query: 26  GSNPFDSDDEGNDNKKYNSSRKTSSERALATLEVNTNPFDDVDDTKKPSSSLYAAPSADR 85
           G+N   ++   N      + R+TSSE  L T +     FDD D                 
Sbjct: 9   GNNKLPNESSNNKGGTITAGRRTSSEPILITPD-----FDDDD----------------- 46

Query: 86  NRYRNDFRESGGVENQSVQELESYAVYKAEETTKSVNNCLKIAENIREDATKTLVTLHQQ 145
            +Y+N F +SGG+++Q+ +ELE YAVYKAEETTK VNNCLKIAE+IR D  +TL  LHQQ
Sbjct: 47  -KYKNGFNDSGGLQSQTTEELEKYAVYKAEETTKGVNNCLKIAEDIRSDGARTLEMLHQQ 105

Query: 146 GEQITRSHYVAADIDHDXXXXXXXXXXXXXXXXKTWKPKKTRAIRGPVIFGDNPVSRQAN 205
           GEQI R+H +A D+D D                K WKPKKT+ I GP+I  D P  +  N
Sbjct: 106 GEQINRTHEMAVDMDKDLSRGEKLLNNLGGMFSKPWKPKKTKNITGPMITPDKPSKKSEN 165

Query: 206 HLEQREKLGLTSAPRGQTKMRTPPHESSTALQKVEFEKGKQXXXXXXXXXXXXXXXXMAI 265
           H E+REKLGL    +G++  +    + + ALQKVE EK KQ                MA+
Sbjct: 166 HKEEREKLGL--GAKGRSSSQPALDQPTNALQKVEQEKAKQDDGLSDLSDILGDLKSMAV 223

Query: 266 DMGSEIERHNKALSHLDDDVEELNFRVKGANQRGRRLLGK 305
           DMGSEI++ NKAL HL DDV+ELN RV+GANQR R LL K
Sbjct: 224 DMGSEIDKQNKALDHLGDDVDELNSRVQGANQRARHLLSK 263


>AT5G07880.1 | Symbols: SNAP29, ATSNAP29 | synaptosomal-associated
           protein SNAP25-like 29 | chr5:2515587-2516694 REVERSE
           LENGTH=251
          Length = 251

 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/250 (44%), Positives = 144/250 (57%), Gaps = 13/250 (5%)

Query: 62  NPFDDVDDTKK-----PSSSLYAAPSADRNRYRNDFRESGGVENQSVQELESYAVYKAEE 116
           NPFDD  +  K     P          ++ R+ +  + SGG ENQ+VQELESYAVY +EE
Sbjct: 9   NPFDDEKEAAKSFSLNPFDDDDDDKEVEK-RFTSSLKPSGGKENQTVQELESYAVYNSEE 67

Query: 117 TTKSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHYVAADIDHDXXXXXXXXXXXXXX 176
           TTK+V  CLK+AE IR DA+KTLV L++QG+QITR+H    D+DH               
Sbjct: 68  TTKTVQGCLKVAEEIRCDASKTLVMLNEQGDQITRTHQKTVDLDHHLSRGEKILGRLGGV 127

Query: 177 XXKTWKPKKTRAIRGPVIF-GDNPVSRQANHLEQREKLGLTSAPRGQTKMRTPPHESSTA 235
             +TWKPKK+R+I GPVI  GD+P  R+   L+ REKLGL   P  + K +T P E+  A
Sbjct: 128 FSRTWKPKKSRSITGPVITKGDSP-KRKVIDLKTREKLGLN--PSLKPKSKTLP-EAVDA 183

Query: 236 LQKVEFEKGKQXXXXXXXXXXXXXXXXMAIDMGSEIERHNKALSHLDDDVEELNFRVKGA 295
            QK +    KQ                MA+DMG+ IER    L HL D+ +ELN+RVK +
Sbjct: 184 YQKTQI--AKQDEALTDLSALLGELKNMAVDMGTAIERQTNELDHLQDNADELNYRVKQS 241

Query: 296 NQRGRRLLGK 305
           NQR R LL K
Sbjct: 242 NQRARYLLRK 251