Miyakogusa Predicted Gene

Lj4g3v1660960.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1660960.2 tr|Q3EAN6|Q3EAN6_ARATH HNH endonuclease
OS=Arabidopsis thaliana GN=At3g47490 PE=4
SV=1,55.22,0.00000000000003,HNH,HNH endonuclease,CUFF.49560.2
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18680.1 | Symbols:  | HNH endonuclease domain-containing pro...   243   3e-65
AT3G47490.1 | Symbols:  | HNH endonuclease | chr3:17498337-17500...   136   5e-33
AT3G47490.3 | Symbols:  | HNH endonuclease | chr3:17498454-17500...   124   3e-29
AT3G47490.2 | Symbols:  | HNH endonuclease | chr3:17498337-17498...    83   1e-16

>AT1G18680.1 | Symbols:  | HNH endonuclease domain-containing
           protein | chr1:6432133-6433434 REVERSE LENGTH=186
          Length = 186

 Score =  243 bits (621), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 110/151 (72%), Positives = 125/151 (82%)

Query: 13  NGENRPRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCLGCLCYEYDHIV 72
           NGE RPR FD K K  CW  AD+VPGRHP+RWRKD AGNIVCKRF NC GCLC+EYDHIV
Sbjct: 35  NGEERPRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIV 94

Query: 73  PFSKGGESTAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTDKELDVIEMAVYGDV 132
           P+SKGGES AENCQILQ+RVNRFKS +  +D+  LK YSC + FTDKELDVIEMAVYGDV
Sbjct: 95  PYSKGGESIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMAVYGDV 154

Query: 133 IRPGNQCRCRTVAEMLGKYKLKDKTDACKLP 163
           +RPG +CRC+TVAE+LG+ K KD   AC+LP
Sbjct: 155 LRPGKECRCKTVAELLGQSKSKDGKAACELP 185


>AT3G47490.1 | Symbols:  | HNH endonuclease | chr3:17498337-17500731
           FORWARD LENGTH=234
          Length = 234

 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 86/133 (64%), Gaps = 2/133 (1%)

Query: 10  GDGNGENRPRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCLGCLCYEYD 69
           GD N E  PRSF    K  CW KA+ + GR P+RWR+D  GNIV ++   C GCLC++YD
Sbjct: 102 GDPNPE--PRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYD 159

Query: 70  HIVPFSKGGESTAENCQILQSRVNRFKSDKSQIDSEELKGYSCDVNFTDKELDVIEMAVY 129
           HIVP+SKGG+ST ENCQ+LQ++VNR K +K+ I   EL   S       +++D+IE+  Y
Sbjct: 160 HIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAY 219

Query: 130 GDVIRPGNQCRCR 142
           G+V R      CR
Sbjct: 220 GNVQRAPTSSGCR 232


>AT3G47490.3 | Symbols:  | HNH endonuclease | chr3:17498454-17500731
           FORWARD LENGTH=215
          Length = 215

 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 22/153 (14%)

Query: 10  GDGNGENRPRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCLGCLCYEYD 69
           GD N E  PRSF    K  CW KA+ + GR P+RWR+D  GNIV ++   C GCLC++YD
Sbjct: 63  GDPNPE--PRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYD 120

Query: 70  HIVPFS--------------------KGGESTAENCQILQSRVNRFKSDKSQIDSEELKG 109
           HIVP+S                    KGG+ST ENCQ+LQ++VNR K +K+ I   EL  
Sbjct: 121 HIVPYSKDMCPLEHAFDEPHKDFLDLKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQ 180

Query: 110 YSCDVNFTDKELDVIEMAVYGDVIRPGNQCRCR 142
            S       +++D+IE+  YG+V R      CR
Sbjct: 181 RSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCR 213


>AT3G47490.2 | Symbols:  | HNH endonuclease | chr3:17498337-17498867
           FORWARD LENGTH=176
          Length = 176

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 2/67 (2%)

Query: 10  GDGNGENRPRSFDSKTKTICWTKADVVPGRHPDRWRKDAAGNIVCKRFFNCLGCLCYEYD 69
           GD N E  PRSF    K  CW KA+ + GR P+RWR+D  GNIV ++   C GCLC++YD
Sbjct: 102 GDPNPE--PRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYD 159

Query: 70  HIVPFSK 76
           HIVP+SK
Sbjct: 160 HIVPYSK 166