Miyakogusa Predicted Gene

Lj4g3v1659940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1659940.1 Non Chatacterized Hit- tr|B6SKC3|B6SKC3_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,37.39,1e-17,seg,NULL,CUFF.49559.1
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61340.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    56   2e-08

>AT5G61340.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:24662064-24663044 REVERSE LENGTH=326
          Length = 326

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 80/222 (36%), Gaps = 14/222 (6%)

Query: 1   MEVSCKILRRSIHSFLQNYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIYNRFR 60
           ME   KI+RRSIH+FLQNYH                                  ++ R  
Sbjct: 5   MEDPSKIMRRSIHTFLQNYHRVTTAAAVALPFSAGLLLSQPFFSSSSST-----LHMRLN 59

Query: 61  ILFDAAGFPSSSQLFTILNLKVSQXXXXXXXXX-XXXXXXXXXXXXXXXXXXNNHKTIFS 119
           +LF  AGF SS   F IL+LK+SQ                            NNH    S
Sbjct: 60  MLFRGAGFSSSHDFFNILSLKLSQTLSSSLFTLPFSLTFLLLSKAYVIKLLSNNHSADSS 119

Query: 120 SPSLKSIISLYKPLLQTYVCSCFLIXXXXXXXXXXXXXXXXXIERLGXXXXXXXXXXXXX 179
           S         Y  LL+TYVC+ F +                 +E  G             
Sbjct: 120 SV-------FYLRLLKTYVCNFFFLLSANASAFALFFLAYNTLEAFGFSSRNFYTFLSLS 172

Query: 180 XGAVLFSVILANALVICNMAMAISGVEGHGGYLAILKGCVFI 221
              +  S+I+ANA VI N+A+  S     GGY  ILK C+ I
Sbjct: 173 SAIIY-SIIIANAFVISNLALVSSPSSSSGGYTNILKACLLI 213