Miyakogusa Predicted Gene

Lj4g3v1658750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1658750.1 Non Chatacterized Hit- tr|B1PIE4|B1PIE4_9CONI
Putative exonuclease family protein (Fragment)
OS=Cupr,43.69,7e-17,Ribonuclease H-like,Ribonuclease H-like domain; no
description,Exonuclease; SUBFAMILY NOT NAMED,NULL,CUFF.49553.1
         (465 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G61390.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   505   e-143
AT5G07710.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   505   e-143
AT1G74390.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   493   e-139
AT1G74390.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   462   e-130
AT4G39810.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   263   1e-70

>AT5G61390.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:24678802-24680857
           REVERSE LENGTH=487
          Length = 487

 Score =  505 bits (1301), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 267/488 (54%), Positives = 330/488 (67%), Gaps = 30/488 (6%)

Query: 1   MGSLAAEDRSEIAFFDLETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLS 60
           +G   AEDRSEIAFFD+ETT+P R GQG+AILEFG+ILVCP+KL EL+NYS LVRPA+L+
Sbjct: 5   VGLTPAEDRSEIAFFDVETTIPFRVGQGYAILEFGSILVCPKKLVELKNYSVLVRPANLN 64

Query: 61  LISPLSERCNGITPDAVSSAPTFADIADTVYDLLHGRIWAGHNIIRFDCVRLRDAFAAIN 120
           LI+P S +CNGI  + V SA TFADIADTVYD+LHGRIWAGHNI++FDC R+R+AFA I 
Sbjct: 65  LITPRSVKCNGIKREDVESALTFADIADTVYDILHGRIWAGHNILKFDCPRIREAFAEIG 124

Query: 121 QPPPEPKGTIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCA 180
           + PPEPKGTIDSL LLTQ+FGRRAG+MKMATLATYFGLG QTHRSLDDVRMN EVLKYCA
Sbjct: 125 RDPPEPKGTIDSLALLTQRFGRRAGDMKMATLATYFGLGNQTHRSLDDVRMNFEVLKYCA 184

Query: 181 TVLFLESSLPDIFTENSWVSPNATT---RSRSNGKSPSEGGL---LNINKDTV------- 227
           TVLFLESSLPD   ENS  +    T   R R+  KSP +         N  T+       
Sbjct: 185 TVLFLESSLPDELIENSVTTTTPETSSRRRRTIKKSPLQSPTDQQTGENMTTIPILSFVS 244

Query: 228 --------FNMLELKDRLNGESIQTDVAMDEKLLQDLPDTXXXXXXXXXXXXXXXVLELD 279
                   F+M  L++ +  E +Q+DV M+E+  Q                     +ELD
Sbjct: 245 SAEAQTDPFDMSTLRNEIAPEVLQSDVPMEEEQNQQ-----SETVASEGTGDQEGFMELD 299

Query: 280 EISIPAIDASLVPSFLGSQ--RIELHHNGFSFQLHCTGLKVRFGISTKFVDSAGRPRLNF 337
           +IS+ +I A+ VP + GSQ  +++L       QLHC  LKVRFGI+ KF+D AGR RLNF
Sbjct: 300 KISVSSIRATHVPLYDGSQTMKLQLFLGDRPLQLHCPRLKVRFGINGKFMDKAGRRRLNF 359

Query: 338 VVDASPSLCDVLDACDRVAQKLXXXXXXXXXWRPVVIRKEGFFNYPTIRLHIPTAVFENV 397
           V+D  PSLC+VL  CD  AQ +         W P+VI  +GF N PT R+HIPT +  ++
Sbjct: 360 VIDLYPSLCNVLQECDSAAQTISVDSGSGSDWNPLVIPMKGFLNCPTARIHIPTELNGDI 419

Query: 398 ALYATEIYQRETSG--TVQRLLFSKFDAAELGSMFMPGTFVDAFFSLDLYDYQQSAGIKL 455
             YA EI+Q+E SG    Q+L+ S   A E+ S+  P T +DAF SL+ YDYQQ AGI+L
Sbjct: 420 DRYAAEIHQKEFSGATATQKLISSNPKAEEIESLLNPRTVLDAFLSLEPYDYQQRAGIRL 479

Query: 456 VAKKLIIH 463
           VA+KL+IH
Sbjct: 480 VARKLVIH 487


>AT5G07710.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:2453310-2455357
           FORWARD LENGTH=468
          Length = 468

 Score =  505 bits (1300), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 271/473 (57%), Positives = 331/473 (69%), Gaps = 23/473 (4%)

Query: 7   EDRSEIAFFDLETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLSLISPLS 66
           EDRSEIAFFD+ETTVP R GQ FAILEFG+ILVCP+KLTELR+Y+TLV+PADLSLIS LS
Sbjct: 4   EDRSEIAFFDVETTVPKR-GQRFAILEFGSILVCPKKLTELRSYTTLVQPADLSLISSLS 62

Query: 67  ERCNGITPDAVSSAPTFADIADTVYDLLHGRIWAGHNIIRFDCVRLRDAFAAINQPPPEP 126
            RCNGI  D V  AP FADIADTVYD+LHGRIWAGHNI+RFDC R+R+AFA I + PPEP
Sbjct: 63  VRCNGIKRDDVVLAPLFADIADTVYDILHGRIWAGHNILRFDCARIREAFAEIGRQPPEP 122

Query: 127 KGTIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLE 186
           KG IDSL LLTQKFGRRAG+MKMATLA YFGLG QTHRSLDDVRMNLEVLKYCATVLFLE
Sbjct: 123 KGAIDSLGLLTQKFGRRAGDMKMATLARYFGLGNQTHRSLDDVRMNLEVLKYCATVLFLE 182

Query: 187 SSLPDIFTENSWVSPNATTRSRSNGKSPSEGG-------LLNINKDTV-----FNMLELK 234
           SSLP    +NS VSP  T  SR    +  EG        L +I++++      FNM  L+
Sbjct: 183 SSLPYAHVDNS-VSPE-TISSRRRIDASREGNTVTTSVRLPSISENSAAQPDPFNMSVLR 240

Query: 235 DRLNGES-IQTDVAMDEKLLQDLPDTXXXXXXXXXXXXXXXVLELDEISIPAIDASLVPS 293
           + +  ++ IQ+D+ M+E+ ++                     L  D +S+  I A L P 
Sbjct: 241 NEMASDNHIQSDILMEEEQIE-----PSDVVASENTSDHEGFLTPDAMSLSNIKAMLFPF 295

Query: 294 FLGSQ--RIELHHNGFSFQLHCTGLKVRFGISTKFVDSAGRPRLNFVVDASPSLCDVLDA 351
           + GSQ  +++L H     QL+C+ LK+RFG++ KF+D+ GR RLNFVVD +PSL  +L+A
Sbjct: 296 YPGSQMMKLKLLHGDSPLQLYCSYLKIRFGVNGKFLDNTGRRRLNFVVDLNPSLYSILEA 355

Query: 352 CDRVAQKLXXXXXXXXXWRPVVIRKEGFFNYPTIRLHIPTAVFENVALYATEIYQRETSG 411
           CD  AQKL         W PVV   +GF NYP  R+HI T +  + A YATEI+QRE+SG
Sbjct: 356 CDSNAQKLSVDSGSTSEWNPVVNPMKGFVNYPNARIHIATEINGDEARYATEIHQRESSG 415

Query: 412 TVQRLLFSKFDAAELGSMFMPGTFVDAFFSLDLYDYQQSAGIKLVAKKLIIHS 464
             Q+L+FS  +  EL S+   G+ VDAF SL+ YDYQQ AGI+LVAKKL+I S
Sbjct: 416 ATQKLIFSNPNNEELESLLTTGSVVDAFLSLEPYDYQQKAGIRLVAKKLVIQS 468


>AT1G74390.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:27961760-27963826
           REVERSE LENGTH=506
          Length = 506

 Score =  493 bits (1269), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 265/502 (52%), Positives = 326/502 (64%), Gaps = 45/502 (8%)

Query: 3   SLAAEDRSEIAFFDLETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLSLI 62
           SL  ++RSEIAFFDLET VPT+ G+ FAILEFGAILVCPR+L EL +YSTLVRP DLSLI
Sbjct: 4   SLGGDERSEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLI 63

Query: 63  SPLSERCNGITPDAVSSAPTFADIADTVYDLLHGRIWAGHNIIRFDCVRLRDAFAAINQP 122
           S L++R +GIT D V SA TF++IAD VYD+LHGRIWAGHNIIRFDCVR+R+AFA I   
Sbjct: 64  STLTKRRSGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLS 123

Query: 123 PPEPKGTIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 182
           PPEPK TIDSL LL+QKFG+RAG+MKMA+LATYFGLG Q HRSLDDVRMNLEV+KYCATV
Sbjct: 124 PPEPKATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLEVVKYCATV 183

Query: 183 LFLESSLPDIFTENSWVSPNATTRSRSNGKSPSEG------------------------- 217
           LFLESS+PDI T+ SW SP  + R+RSNGK  + G                         
Sbjct: 184 LFLESSVPDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSPKTDPSSSSVDATI 243

Query: 218 -------GLLNINKDTVFNMLELKD---------RLNGESIQTDVAMDEKLLQDLPDTXX 261
                   LL    ++  +  +++D         +L   ++QTD A + K ++   ++  
Sbjct: 244 VKNHPIVSLLTECSESDASSYDIEDPIDITTLIGKLRIGTLQTDAAEEAKTVRQQDES-- 301

Query: 262 XXXXXXXXXXXXXVLELDEISIPAIDASLVPSFLGSQRIELHHNGFSFQLHCTGLKVRFG 321
                         L ++E+S+ +I ASLVP + GS R++L HN     L    LKVRFG
Sbjct: 302 -PPSPDSDAKDESFLGVNEVSVSSIRASLVPFYRGSLRMKLFHNDTPLHLCWHSLKVRFG 360

Query: 322 ISTKFVDSAGRPRLNFVVDASPSLCDVLDACDRVAQKLXXXXXXXXXWRPVVIRKEGFFN 381
           IS KFVD AGRP+LN +VDA   LC +LDA D  A  L         WRP VIRKEGF N
Sbjct: 361 ISRKFVDHAGRPKLNIIVDAPLDLCKILDAVDAAAHNLPTDSSTNSDWRPTVIRKEGFAN 420

Query: 382 YPTIRLHIPTAVFENVALYATEIYQRETS-GTVQRLLFSKFDAAELGSMFMPGTFVDAFF 440
           YPT RLHI +    +  L  T++YQ+E   GT Q+L  S  +  +L S  +PGT VDAFF
Sbjct: 421 YPTARLHISSESNGDDTLCGTQVYQKEEPLGTNQKLDVSSDNLEKLESALLPGTLVDAFF 480

Query: 441 SLDLYDYQQSAGIKLVAKKLII 462
           SL+ Y YQQ AGI+L  KKL+I
Sbjct: 481 SLEPYSYQQMAGIRLAVKKLVI 502


>AT1G74390.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr1:27961760-27963826
           REVERSE LENGTH=495
          Length = 495

 Score =  462 bits (1190), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 255/502 (50%), Positives = 315/502 (62%), Gaps = 56/502 (11%)

Query: 3   SLAAEDRSEIAFFDLETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLSLI 62
           SL  ++RSEIAFFDLET VPT+ G+ FAILEFGAILVCPR+L EL +YSTLVRP DLSLI
Sbjct: 4   SLGGDERSEIAFFDLETAVPTKSGEPFAILEFGAILVCPRRLEELYSYSTLVRPTDLSLI 63

Query: 63  SPLSERCNGITPDAVSSAPTFADIADTVYDLLHGRIWAGHNIIRFDCVRLRDAFAAINQP 122
           S L++R +GIT D V SA TF++IAD VYD+LHGRIWAGHNIIRFDCVR+R+AFA I   
Sbjct: 64  STLTKRRSGITRDGVLSAHTFSEIADKVYDILHGRIWAGHNIIRFDCVRIREAFAEIGLS 123

Query: 123 PPEPKGTIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATV 182
           PPEPK TIDSL LL+QKFG+RAG+MKMA+LATYFGLG Q HRSLDDVRMNLE        
Sbjct: 124 PPEPKATIDSLSLLSQKFGKRAGDMKMASLATYFGLGDQAHRSLDDVRMNLE-------- 175

Query: 183 LFLESSLPDIFTENSWVSPNATTRSRSNGKSPSEG------------------------- 217
              ESS+PDI T+ SW SP  + R+RSNGK  + G                         
Sbjct: 176 ---ESSVPDILTDMSWFSPRKSPRTRSNGKLVANGVRESSTSSSSSPKTDPSSSSVDATI 232

Query: 218 -------GLLNINKDTVFNMLELKD---------RLNGESIQTDVAMDEKLLQDLPDTXX 261
                   LL    ++  +  +++D         +L   ++QTD A + K ++   ++  
Sbjct: 233 VKNHPIVSLLTECSESDASSYDIEDPIDITTLIGKLRIGTLQTDAAEEAKTVRQQDES-- 290

Query: 262 XXXXXXXXXXXXXVLELDEISIPAIDASLVPSFLGSQRIELHHNGFSFQLHCTGLKVRFG 321
                         L ++E+S+ +I ASLVP + GS R++L HN     L    LKVRFG
Sbjct: 291 -PPSPDSDAKDESFLGVNEVSVSSIRASLVPFYRGSLRMKLFHNDTPLHLCWHSLKVRFG 349

Query: 322 ISTKFVDSAGRPRLNFVVDASPSLCDVLDACDRVAQKLXXXXXXXXXWRPVVIRKEGFFN 381
           IS KFVD AGRP+LN +VDA   LC +LDA D  A  L         WRP VIRKEGF N
Sbjct: 350 ISRKFVDHAGRPKLNIIVDAPLDLCKILDAVDAAAHNLPTDSSTNSDWRPTVIRKEGFAN 409

Query: 382 YPTIRLHIPTAVFENVALYATEIYQRETS-GTVQRLLFSKFDAAELGSMFMPGTFVDAFF 440
           YPT RLHI +    +  L  T++YQ+E   GT Q+L  S  +  +L S  +PGT VDAFF
Sbjct: 410 YPTARLHISSESNGDDTLCGTQVYQKEEPLGTNQKLDVSSDNLEKLESALLPGTLVDAFF 469

Query: 441 SLDLYDYQQSAGIKLVAKKLII 462
           SL+ Y YQQ AGI+L  KKL+I
Sbjct: 470 SLEPYSYQQMAGIRLAVKKLVI 491


>AT4G39810.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr4:18474608-18475735
           REVERSE LENGTH=255
          Length = 255

 Score =  263 bits (673), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 159/202 (78%), Gaps = 2/202 (0%)

Query: 10  SEIAFFDLETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLSLISPLSERC 69
           +EI FFDLET VP + GQ F ILEFGAI+VCP+KL EL +++TL++P DLS++S  S R 
Sbjct: 8   NEIVFFDLETNVPNKAGQHFHILEFGAIIVCPKKLEELESFTTLIQPKDLSVVSIRSSRS 67

Query: 70  NGITPDAVSSAPTFADIADTVYDLLHGRIWAGHNIIRFDCVRLRDAFAAINQPPPEPKGT 129
           +GIT   V++AP+F D+A+ ++ LL+GRIWAGHNI RFDCVR+++AFA I +  PEP G 
Sbjct: 68  DGITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHNIRRFDCVRIKEAFAEIGKAAPEPSGI 127

Query: 130 IDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSL 189
           IDSL LL+ KFG+RAGNMKMA+LA YFGLG Q HRSLDDVRMNLEVLK+CATVLFLES+L
Sbjct: 128 IDSLGLLSDKFGKRAGNMKMASLAAYFGLGVQKHRSLDDVRMNLEVLKHCATVLFLESTL 187

Query: 190 PDIFTENSW-VSPNATTRSRSN 210
           P+   E  W  S    TRSR N
Sbjct: 188 PN-HLEGKWHTSSKIMTRSRRN 208