Miyakogusa Predicted Gene

Lj4g3v1635280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1635280.1 Non Chatacterized Hit- tr|I1JZP4|I1JZP4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.842 PE=4,71.64,9e-18,no
description,Copper amine oxidase, N2/N3-terminal; DUF3223,Protein of
unknown function DUF3223; se,CUFF.49520.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62440.1 | Symbols:  | Protein of unknown function (DUF3223) ...   189   1e-48
AT1G45230.2 | Symbols:  | Protein of unknown function (DUF3223) ...    48   6e-06
AT1G45230.1 | Symbols:  | Protein of unknown function (DUF3223) ...    48   6e-06

>AT5G62440.1 | Symbols:  | Protein of unknown function (DUF3223) |
           chr5:25072620-25073917 REVERSE LENGTH=202
          Length = 202

 Score =  189 bits (479), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 100/119 (84%), Gaps = 2/119 (1%)

Query: 57  SKMPKVGEEEKKPSGPVKLGPKSFDSSREMFDYFYNFLHVWPPNVNLNKYEHMVLLELLK 116
           SK  KVGEEEK  SGPVKLGPK F +S  MFDYF  FLH WP ++++NKYEHMVLL+L+K
Sbjct: 53  SKKQKVGEEEK--SGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIK 110

Query: 117 NGHTEPDEKIGGGILAFQVRKHPMWKSRCFFLIREDESIDDFSFRKCVDHILPLPEEMQ 175
            GH+EP++KIGGGI  FQVR HPMWKSRCFFL+RED++ DDFSFRKCVD ILPLPE M+
Sbjct: 111 KGHSEPEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMK 169


>AT1G45230.2 | Symbols:  | Protein of unknown function (DUF3223) |
           chr1:17169874-17171381 REVERSE LENGTH=219
          Length = 219

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 110 VLLELLKNGHTEPDEKIGGGILAFQVRKHPMWKS-RCFFLIREDESIDDFSFRKCVDHIL 168
            ++E+L   H E ++KIG GI    V  HP ++S RC F++R+D  + DFS+ KC+  ++
Sbjct: 137 TIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196


>AT1G45230.1 | Symbols:  | Protein of unknown function (DUF3223) |
           chr1:17169874-17171381 REVERSE LENGTH=219
          Length = 219

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 110 VLLELLKNGHTEPDEKIGGGILAFQVRKHPMWKS-RCFFLIREDESIDDFSFRKCVDHIL 168
            ++E+L   H E ++KIG GI    V  HP ++S RC F++R+D  + DFS+ KC+  ++
Sbjct: 137 TIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLI 196