Miyakogusa Predicted Gene

Lj4g3v1616870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1616870.1 tr|Q9SHG3|Q9SHG3_ARATH F20D23.26 protein
OS=Arabidopsis thaliana GN=F20D23.26 PE=4 SV=1,41.5,1e-16,SH2,SH2
domain; SH2 domain,NULL; SIGNAL TRANSDUCER AND ACTIVATOR OF
TRANSCRIPTION,NULL; SIGNAL TRANS,CUFF.49493.1
         (347 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G78540.1 | Symbols: SHB, ATSHB, STATLB | SH2 domain protein B...   370   e-102
AT1G78540.2 | Symbols: SHB | SH2 domain protein B | chr1:2954119...   362   e-100
AT1G17040.1 | Symbols: SHA, ATSHA, STATLA | SH2 domain protein A...   351   4e-97
AT1G17040.2 | Symbols: SHA | SH2 domain protein A | chr1:5825109...   351   5e-97

>AT1G78540.1 | Symbols: SHB, ATSHB, STATLB | SH2 domain protein B |
           chr1:29541244-29544574 REVERSE LENGTH=668
          Length = 668

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/327 (55%), Positives = 231/327 (70%), Gaps = 22/327 (6%)

Query: 21  VKRFRVGHDKISVSVQPDEECNSHVWTANQVQNEFPTSMDARPTKFXXXXXXXXXXXXIG 80
           VKR R+G + +S S +  ++CNSH  T+ Q +N     +                     
Sbjct: 364 VKRIRLGKESVSGSEESYQQCNSHPQTSRQFENGNGMRLHEE------------------ 405

Query: 81  ERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSG 140
           + +S  +  +  RY ISD TIFKYCL  L +++L+LKEI   SS +E+LE A+ VSLYSG
Sbjct: 406 DNSSIDSENSEMRYTISDSTIFKYCLGNLIDKALLLKEITNNSSDDEVLEFANQVSLYSG 465

Query: 141 CSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQD 200
           CSHH  QI +A+ LI +GTN W ++S NN HV W++ VYEIEE FM+I+ C SRSL+HQD
Sbjct: 466 CSHHSYQINMARELIAEGTNAWILISRNNQHVHWDNVVYEIEEHFMRISKCSSRSLTHQD 525

Query: 201 LELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAE 260
            ELLRRI+GC EY+TQE+FEK+WCW++PVA++ISR LIN +W S +PKWIEG ITKEEAE
Sbjct: 526 FELLRRISGCYEYITQENFEKMWCWLFPVAYSISRGLINGMWRSSSPKWIEGFITKEEAE 585

Query: 261 ASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDK 320
            SL+G    QEPGTF LRFP SR+WPHPDAG L+VTYVG+D+ +HH+ L +D+   S ++
Sbjct: 586 HSLQG----QEPGTFILRFPISRTWPHPDAGSLVVTYVGHDFALHHKQLKIDNICESSER 641

Query: 321 RTDMKPLQDMLLEEPELSRLGRIIRSH 347
             D KPLQDMLL EPELSRLGRI RSH
Sbjct: 642 YMDAKPLQDMLLAEPELSRLGRIKRSH 668


>AT1G78540.2 | Symbols: SHB | SH2 domain protein B |
           chr1:29541195-29544574 REVERSE LENGTH=696
          Length = 696

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/322 (54%), Positives = 227/322 (70%), Gaps = 22/322 (6%)

Query: 21  VKRFRVGHDKISVSVQPDEECNSHVWTANQVQNEFPTSMDARPTKFXXXXXXXXXXXXIG 80
           VKR R+G + +S S +  ++CNSH  T+ Q +N     +                     
Sbjct: 364 VKRIRLGKESVSGSEESYQQCNSHPQTSRQFENGNGMRLHEE------------------ 405

Query: 81  ERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSG 140
           + +S  +  +  RY ISD TIFKYCL  L +++L+LKEI   SS +E+LE A+ VSLYSG
Sbjct: 406 DNSSIDSENSEMRYTISDSTIFKYCLGNLIDKALLLKEITNNSSDDEVLEFANQVSLYSG 465

Query: 141 CSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQD 200
           CSHH  QI +A+ LI +GTN W ++S NN HV W++ VYEIEE FM+I+ C SRSL+HQD
Sbjct: 466 CSHHSYQINMARELIAEGTNAWILISRNNQHVHWDNVVYEIEEHFMRISKCSSRSLTHQD 525

Query: 201 LELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAE 260
            ELLRRI+GC EY+TQE+FEK+WCW++PVA++ISR LIN +W S +PKWIEG ITKEEAE
Sbjct: 526 FELLRRISGCYEYITQENFEKMWCWLFPVAYSISRGLINGMWRSSSPKWIEGFITKEEAE 585

Query: 261 ASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDK 320
            SL+G    QEPGTF LRFP SR+WPHPDAG L+VTYVG+D+ +HH+ L +D+   S ++
Sbjct: 586 HSLQG----QEPGTFILRFPISRTWPHPDAGSLVVTYVGHDFALHHKQLKIDNICESSER 641

Query: 321 RTDMKPLQDMLLEEPELSRLGR 342
             D KPLQDMLL EPELSRLGR
Sbjct: 642 YMDAKPLQDMLLAEPELSRLGR 663


>AT1G17040.1 | Symbols: SHA, ATSHA, STATLA | SH2 domain protein A |
           chr1:5825109-5828056 FORWARD LENGTH=641
          Length = 641

 Score =  351 bits (900), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 218/325 (67%), Gaps = 24/325 (7%)

Query: 21  VKRFRVGHDKISVSVQPDEECNSHVWTANQVQNEFPTSMDARPTKFXXXXXXXXXXXXIG 80
           +KR R+G +K+S S               ++ N   TSM+ RP                 
Sbjct: 339 MKRIRLGEEKVSES---------------KIVNGNGTSMEWRPQNHEEDNSSTD-----S 378

Query: 81  ERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSG 140
           E     ++ A RRY I D  IFKYCL  L ER+L+LKEI   SS  E+ E A  VSLYSG
Sbjct: 379 ENTEMRDSTAFRRYSIPDWIIFKYCLGNLTERALLLKEITNNSSDEEVSEFADQVSLYSG 438

Query: 141 CSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQD 200
           CSHHG QI +A++LI +GTN W ++S N  HV W++ V EIEE FM+IA C SRSL+HQD
Sbjct: 439 CSHHGYQIKMARKLIAEGTNAWNLISRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQD 498

Query: 201 LELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAE 260
            +LLRRI GC EY+TQE+FE +WCW++PVA  +SR LIN +W S +PKWIEG +TKEEAE
Sbjct: 499 FDLLRRICGCYEYITQENFETMWCWLFPVASAVSRGLINGMWRSASPKWIEGFVTKEEAE 558

Query: 261 ASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDK 320
            SL+     Q PGTF LRFPTSRSWPHPDAG ++VTYVG+D  IHHRLL+++H   S ++
Sbjct: 559 RSLQN----QVPGTFILRFPTSRSWPHPDAGSVVVTYVGHDLVIHHRLLTINHICDSSER 614

Query: 321 RTDMKPLQDMLLEEPELSRLGRIIR 345
            TD K LQDMLL EPELSRLGRIIR
Sbjct: 615 YTDAKQLQDMLLAEPELSRLGRIIR 639


>AT1G17040.2 | Symbols: SHA | SH2 domain protein A |
           chr1:5825109-5828056 FORWARD LENGTH=651
          Length = 651

 Score =  351 bits (900), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 177/325 (54%), Positives = 218/325 (67%), Gaps = 24/325 (7%)

Query: 21  VKRFRVGHDKISVSVQPDEECNSHVWTANQVQNEFPTSMDARPTKFXXXXXXXXXXXXIG 80
           +KR R+G +K+S S               ++ N   TSM+ RP                 
Sbjct: 349 MKRIRLGEEKVSES---------------KIVNGNGTSMEWRPQNHEEDNSSTD-----S 388

Query: 81  ERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSG 140
           E     ++ A RRY I D  IFKYCL  L ER+L+LKEI   SS  E+ E A  VSLYSG
Sbjct: 389 ENTEMRDSTAFRRYSIPDWIIFKYCLGNLTERALLLKEITNNSSDEEVSEFADQVSLYSG 448

Query: 141 CSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQD 200
           CSHHG QI +A++LI +GTN W ++S N  HV W++ V EIEE FM+IA C SRSL+HQD
Sbjct: 449 CSHHGYQIKMARKLIAEGTNAWNLISRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQD 508

Query: 201 LELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAE 260
            +LLRRI GC EY+TQE+FE +WCW++PVA  +SR LIN +W S +PKWIEG +TKEEAE
Sbjct: 509 FDLLRRICGCYEYITQENFETMWCWLFPVASAVSRGLINGMWRSASPKWIEGFVTKEEAE 568

Query: 261 ASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDK 320
            SL+     Q PGTF LRFPTSRSWPHPDAG ++VTYVG+D  IHHRLL+++H   S ++
Sbjct: 569 RSLQN----QVPGTFILRFPTSRSWPHPDAGSVVVTYVGHDLVIHHRLLTINHICDSSER 624

Query: 321 RTDMKPLQDMLLEEPELSRLGRIIR 345
            TD K LQDMLL EPELSRLGRIIR
Sbjct: 625 YTDAKQLQDMLLAEPELSRLGRIIR 649