Miyakogusa Predicted Gene
- Lj4g3v1616870.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1616870.1 tr|Q9SHG3|Q9SHG3_ARATH F20D23.26 protein
OS=Arabidopsis thaliana GN=F20D23.26 PE=4 SV=1,41.5,1e-16,SH2,SH2
domain; SH2 domain,NULL; SIGNAL TRANSDUCER AND ACTIVATOR OF
TRANSCRIPTION,NULL; SIGNAL TRANS,CUFF.49493.1
(347 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78540.1 | Symbols: SHB, ATSHB, STATLB | SH2 domain protein B... 370 e-102
AT1G78540.2 | Symbols: SHB | SH2 domain protein B | chr1:2954119... 362 e-100
AT1G17040.1 | Symbols: SHA, ATSHA, STATLA | SH2 domain protein A... 351 4e-97
AT1G17040.2 | Symbols: SHA | SH2 domain protein A | chr1:5825109... 351 5e-97
>AT1G78540.1 | Symbols: SHB, ATSHB, STATLB | SH2 domain protein B |
chr1:29541244-29544574 REVERSE LENGTH=668
Length = 668
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/327 (55%), Positives = 231/327 (70%), Gaps = 22/327 (6%)
Query: 21 VKRFRVGHDKISVSVQPDEECNSHVWTANQVQNEFPTSMDARPTKFXXXXXXXXXXXXIG 80
VKR R+G + +S S + ++CNSH T+ Q +N +
Sbjct: 364 VKRIRLGKESVSGSEESYQQCNSHPQTSRQFENGNGMRLHEE------------------ 405
Query: 81 ERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSG 140
+ +S + + RY ISD TIFKYCL L +++L+LKEI SS +E+LE A+ VSLYSG
Sbjct: 406 DNSSIDSENSEMRYTISDSTIFKYCLGNLIDKALLLKEITNNSSDDEVLEFANQVSLYSG 465
Query: 141 CSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQD 200
CSHH QI +A+ LI +GTN W ++S NN HV W++ VYEIEE FM+I+ C SRSL+HQD
Sbjct: 466 CSHHSYQINMARELIAEGTNAWILISRNNQHVHWDNVVYEIEEHFMRISKCSSRSLTHQD 525
Query: 201 LELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAE 260
ELLRRI+GC EY+TQE+FEK+WCW++PVA++ISR LIN +W S +PKWIEG ITKEEAE
Sbjct: 526 FELLRRISGCYEYITQENFEKMWCWLFPVAYSISRGLINGMWRSSSPKWIEGFITKEEAE 585
Query: 261 ASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDK 320
SL+G QEPGTF LRFP SR+WPHPDAG L+VTYVG+D+ +HH+ L +D+ S ++
Sbjct: 586 HSLQG----QEPGTFILRFPISRTWPHPDAGSLVVTYVGHDFALHHKQLKIDNICESSER 641
Query: 321 RTDMKPLQDMLLEEPELSRLGRIIRSH 347
D KPLQDMLL EPELSRLGRI RSH
Sbjct: 642 YMDAKPLQDMLLAEPELSRLGRIKRSH 668
>AT1G78540.2 | Symbols: SHB | SH2 domain protein B |
chr1:29541195-29544574 REVERSE LENGTH=696
Length = 696
Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/322 (54%), Positives = 227/322 (70%), Gaps = 22/322 (6%)
Query: 21 VKRFRVGHDKISVSVQPDEECNSHVWTANQVQNEFPTSMDARPTKFXXXXXXXXXXXXIG 80
VKR R+G + +S S + ++CNSH T+ Q +N +
Sbjct: 364 VKRIRLGKESVSGSEESYQQCNSHPQTSRQFENGNGMRLHEE------------------ 405
Query: 81 ERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSG 140
+ +S + + RY ISD TIFKYCL L +++L+LKEI SS +E+LE A+ VSLYSG
Sbjct: 406 DNSSIDSENSEMRYTISDSTIFKYCLGNLIDKALLLKEITNNSSDDEVLEFANQVSLYSG 465
Query: 141 CSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQD 200
CSHH QI +A+ LI +GTN W ++S NN HV W++ VYEIEE FM+I+ C SRSL+HQD
Sbjct: 466 CSHHSYQINMARELIAEGTNAWILISRNNQHVHWDNVVYEIEEHFMRISKCSSRSLTHQD 525
Query: 201 LELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAE 260
ELLRRI+GC EY+TQE+FEK+WCW++PVA++ISR LIN +W S +PKWIEG ITKEEAE
Sbjct: 526 FELLRRISGCYEYITQENFEKMWCWLFPVAYSISRGLINGMWRSSSPKWIEGFITKEEAE 585
Query: 261 ASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDK 320
SL+G QEPGTF LRFP SR+WPHPDAG L+VTYVG+D+ +HH+ L +D+ S ++
Sbjct: 586 HSLQG----QEPGTFILRFPISRTWPHPDAGSLVVTYVGHDFALHHKQLKIDNICESSER 641
Query: 321 RTDMKPLQDMLLEEPELSRLGR 342
D KPLQDMLL EPELSRLGR
Sbjct: 642 YMDAKPLQDMLLAEPELSRLGR 663
>AT1G17040.1 | Symbols: SHA, ATSHA, STATLA | SH2 domain protein A |
chr1:5825109-5828056 FORWARD LENGTH=641
Length = 641
Score = 351 bits (900), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 177/325 (54%), Positives = 218/325 (67%), Gaps = 24/325 (7%)
Query: 21 VKRFRVGHDKISVSVQPDEECNSHVWTANQVQNEFPTSMDARPTKFXXXXXXXXXXXXIG 80
+KR R+G +K+S S ++ N TSM+ RP
Sbjct: 339 MKRIRLGEEKVSES---------------KIVNGNGTSMEWRPQNHEEDNSSTD-----S 378
Query: 81 ERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSG 140
E ++ A RRY I D IFKYCL L ER+L+LKEI SS E+ E A VSLYSG
Sbjct: 379 ENTEMRDSTAFRRYSIPDWIIFKYCLGNLTERALLLKEITNNSSDEEVSEFADQVSLYSG 438
Query: 141 CSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQD 200
CSHHG QI +A++LI +GTN W ++S N HV W++ V EIEE FM+IA C SRSL+HQD
Sbjct: 439 CSHHGYQIKMARKLIAEGTNAWNLISRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQD 498
Query: 201 LELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAE 260
+LLRRI GC EY+TQE+FE +WCW++PVA +SR LIN +W S +PKWIEG +TKEEAE
Sbjct: 499 FDLLRRICGCYEYITQENFETMWCWLFPVASAVSRGLINGMWRSASPKWIEGFVTKEEAE 558
Query: 261 ASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDK 320
SL+ Q PGTF LRFPTSRSWPHPDAG ++VTYVG+D IHHRLL+++H S ++
Sbjct: 559 RSLQN----QVPGTFILRFPTSRSWPHPDAGSVVVTYVGHDLVIHHRLLTINHICDSSER 614
Query: 321 RTDMKPLQDMLLEEPELSRLGRIIR 345
TD K LQDMLL EPELSRLGRIIR
Sbjct: 615 YTDAKQLQDMLLAEPELSRLGRIIR 639
>AT1G17040.2 | Symbols: SHA | SH2 domain protein A |
chr1:5825109-5828056 FORWARD LENGTH=651
Length = 651
Score = 351 bits (900), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 177/325 (54%), Positives = 218/325 (67%), Gaps = 24/325 (7%)
Query: 21 VKRFRVGHDKISVSVQPDEECNSHVWTANQVQNEFPTSMDARPTKFXXXXXXXXXXXXIG 80
+KR R+G +K+S S ++ N TSM+ RP
Sbjct: 349 MKRIRLGEEKVSES---------------KIVNGNGTSMEWRPQNHEEDNSSTD-----S 388
Query: 81 ERNSPSNNMASRRYPISDMTIFKYCLAGLAERSLMLKEIAFFSSGNEILELAHHVSLYSG 140
E ++ A RRY I D IFKYCL L ER+L+LKEI SS E+ E A VSLYSG
Sbjct: 389 ENTEMRDSTAFRRYSIPDWIIFKYCLGNLTERALLLKEITNNSSDEEVSEFADQVSLYSG 448
Query: 141 CSHHGNQILLAKRLIEDGTNLWKVLSPNNHHVSWESAVYEIEEKFMKIASCDSRSLSHQD 200
CSHHG QI +A++LI +GTN W ++S N HV W++ V EIEE FM+IA C SRSL+HQD
Sbjct: 449 CSHHGYQIKMARKLIAEGTNAWNLISRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQD 508
Query: 201 LELLRRIAGCQEYLTQESFEKLWCWVYPVAFTISRDLINPIWNSVAPKWIEGLITKEEAE 260
+LLRRI GC EY+TQE+FE +WCW++PVA +SR LIN +W S +PKWIEG +TKEEAE
Sbjct: 509 FDLLRRICGCYEYITQENFETMWCWLFPVASAVSRGLINGMWRSASPKWIEGFVTKEEAE 568
Query: 261 ASLRGPAGFQEPGTFTLRFPTSRSWPHPDAGCLIVTYVGNDYKIHHRLLSMDHAYGSGDK 320
SL+ Q PGTF LRFPTSRSWPHPDAG ++VTYVG+D IHHRLL+++H S ++
Sbjct: 569 RSLQN----QVPGTFILRFPTSRSWPHPDAGSVVVTYVGHDLVIHHRLLTINHICDSSER 624
Query: 321 RTDMKPLQDMLLEEPELSRLGRIIR 345
TD K LQDMLL EPELSRLGRIIR
Sbjct: 625 YTDAKQLQDMLLAEPELSRLGRIIR 649