Miyakogusa Predicted Gene

Lj4g3v1614750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1614750.1 Non Chatacterized Hit- tr|B9R946|B9R946_RICCO
Voltage-dependent anion-selective channel, putative
OS,41.35,2e-18,VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1, 2,NULL;
VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL,NULL;,CUFF.49482.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01280.1 | Symbols: VDAC1, ATVDAC1 | voltage dependent anion ...    61   2e-10
AT5G15090.2 | Symbols: VDAC3 | voltage dependent anion channel 3...    49   5e-07
AT5G15090.1 | Symbols: VDAC3, ATVDAC3 | voltage dependent anion ...    49   5e-07

>AT3G01280.1 | Symbols: VDAC1, ATVDAC1 | voltage dependent anion
           channel 1 | chr3:85754-87612 FORWARD LENGTH=276
          Length = 276

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 8/92 (8%)

Query: 7   LACQVEEIVPGFKSLFKCTIPD--SGKVELRYLNNFIGITGCIGLRGNIERGYDPVLNFX 64
           +   V+E  PG +S+F   +PD  SGKVEL+YL+ + GI+  +GL  N      P +NF 
Sbjct: 79  ITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQN------PTVNFS 132

Query: 65  XXXXXXXXXXXANVAFDIPTRTIDKLNAGFNF 96
                       +V+FD  +    K+NAG +F
Sbjct: 133 GVIGSNVLAVGTDVSFDTKSGNFTKINAGLSF 164


>AT5G15090.2 | Symbols: VDAC3 | voltage dependent anion channel 3 |
           chr5:4889641-4891389 REVERSE LENGTH=274
          Length = 274

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 1   MDWNMDLACQVEEIVPGFKSLFKCTIPD--SGKVELRYLNNFIGITGCIGLRGNIERGYD 58
            D ++      +E  PG K + +  +PD  SGK E++Y +++ GI+  +G          
Sbjct: 73  TDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTAT------ 126

Query: 59  PVLNFXXXXXXXXXXXXANVAFDIPTRTIDKLNAGFNFKSSFLDA 103
           P++NF             +VA++  +      NAGFNF    L A
Sbjct: 127 PIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTA 171


>AT5G15090.1 | Symbols: VDAC3, ATVDAC3 | voltage dependent anion
           channel 3 | chr5:4889641-4891389 REVERSE LENGTH=274
          Length = 274

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 1   MDWNMDLACQVEEIVPGFKSLFKCTIPD--SGKVELRYLNNFIGITGCIGLRGNIERGYD 58
            D ++      +E  PG K + +  +PD  SGK E++Y +++ GI+  +G          
Sbjct: 73  TDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTAT------ 126

Query: 59  PVLNFXXXXXXXXXXXXANVAFDIPTRTIDKLNAGFNFKSSFLDA 103
           P++NF             +VA++  +      NAGFNF    L A
Sbjct: 127 PIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTA 171