Miyakogusa Predicted Gene

Lj4g3v1599320.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1599320.2 tr|Q9LMD3|Q9LMD3_ARATH F14D16.9 OS=Arabidopsis
thaliana GN=Clgn PE=4 SV=1,85.71,3e-16,DDT,DDT domain; FAMILY NOT
NAMED,NULL; coiled-coil,NULL; seg,NULL,CUFF.49460.2
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18950.1 | Symbols:  | DDT domain superfamily | chr1:6546539-...   390   e-109
AT5G25580.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   193   8e-50

>AT1G18950.1 | Symbols:  | DDT domain superfamily |
           chr1:6546539-6551549 FORWARD LENGTH=750
          Length = 750

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 184/263 (69%), Positives = 214/263 (81%), Gaps = 3/263 (1%)

Query: 1   MWEFASVLNFLHLFRPLLNISLEFSAEEFETALLTPNDTLFHIHMPLLKAIPPVTRMALT 60
           MWE ASVLNFLH+FRPLL I+ EFSAEEFETALLTPNDTL  IH+PLLKAIPPVTRMALT
Sbjct: 136 MWELASVLNFLHVFRPLLKINAEFSAEEFETALLTPNDTLSDIHIPLLKAIPPVTRMALT 195

Query: 61  RDTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQE 120
           RDTW+TVLCRK+RD WHWVA+GDLPIVA  G EIEVYK+LDP +RVVILKALCDIRVEQE
Sbjct: 196 RDTWVTVLCRKIRDCWHWVAEGDLPIVALQGREIEVYKNLDPAIRVVILKALCDIRVEQE 255

Query: 121 DIRSYIDNSIKHGVQLSTFRKERIGGDSNGISYWYEDDPMIGHRLYREIRKTEVVQMKKG 180
           DIRSYIDNS+K GV LS FRK+R+GGDS+G+++WYE+DP+IGHRLYREIRK EV+++   
Sbjct: 256 DIRSYIDNSLKTGVHLSVFRKDRVGGDSHGVNFWYEEDPLIGHRLYREIRKAEVLKV--- 312

Query: 181 KARGSQVLSSTSYQWEAVATNFDEFQDVSEKLFSSKNRTEALVGKKLKIDMLPEIEXXXX 240
           K +GS++L + +YQWE VATNFDEFQDVSEKL  S +R E  +GKKL  DMLPEIE    
Sbjct: 313 KTKGSKILPNITYQWETVATNFDEFQDVSEKLLQSSSRIEVSLGKKLVKDMLPEIEKEHK 372

Query: 241 XXXXXXXXXXXXXXXXDNYLVMD 263
                           DN++V+D
Sbjct: 373 RKEKLLKKQHRQALLLDNFVVVD 395


>AT5G25580.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: DDT domain superfamily (TAIR:AT1G18950.1); Has 178
           Blast hits to 178 proteins in 75 species: Archae - 0;
           Bacteria - 4; Metazoa - 51; Fungi - 33; Plants - 60;
           Viruses - 1; Other Eukaryotes - 29 (source: NCBI BLink).
           | chr5:8903550-8906108 FORWARD LENGTH=405
          Length = 405

 Score =  193 bits (491), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 102/235 (43%), Positives = 143/235 (60%), Gaps = 9/235 (3%)

Query: 2   WEFASVLNFLHLFRPLLNISLEFSAEEFETALLTPNDTLFHIHMPLLKAIPPVTRMALTR 61
           WE ASVLNF ++F PL++  L+F+AEE E  L+  N T   +H+ LLK IPPV +     
Sbjct: 52  WELASVLNFFNVFGPLVSEKLKFTAEEIEMGLIESNTTNAQLHIALLKGIPPVNKTLDDA 111

Query: 62  DTWITVLCRKLRDWWHWVADGDLPIVASHGAEIEVYKSLDPGVRVVILKALCDIRVEQED 121
           + WITVLC+KL  WW W+A G++ I  + G EI  Y+ LD   R+ ILKALC++RV+Q+D
Sbjct: 112 NAWITVLCKKLAPWWPWIAKGEIHITVNKGEEISEYQGLDSINRLKILKALCELRVQQDD 171

Query: 122 IRSYIDNSIKHGVQLSTFRKERIGGDSNGISYWYEDDPMIGHRLYREIRKTEVVQMKKGK 181
            RSYI  + K G   S+ RK ++GGD    SYW++ + + G+RLYRE+           K
Sbjct: 172 ARSYIQENTKEGDWDSSLRKRKLGGDGKKTSYWFDGNDIQGYRLYREVNGI-------SK 224

Query: 182 ARGSQVLSSTSYQWEAVATNFDEFQDVSEKLFSSKNRTEALVGKKLKIDMLPEIE 236
                 LS  S  WE  ATN DEFQ V+ +L SSK  + A  G+ ++ + +P +E
Sbjct: 225 KNAGSDLSCLS--WETEATNLDEFQSVARELSSSKASSLAATGQMIETEAIPVVE 277