Miyakogusa Predicted Gene

Lj4g3v1599240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1599240.1 tr|B9GVE3|B9GVE3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_757323 PE=4
SV=1,49.53,1e-18,Dynein_light,Dynein light chain, type 1/2; no
description,Dynein light chain, type 1/2; seg,NULL; DL,CUFF.49445.1
         (286 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20110.1 | Symbols:  | Dynein light chain type 1 family prote...   138   4e-33
AT1G23220.1 | Symbols:  | Dynein light chain type 1 family prote...   104   6e-23
AT3G16120.1 | Symbols:  | Dynein light chain type 1 family prote...    81   1e-15
AT4G15930.1 | Symbols:  | Dynein light chain type 1 family prote...    80   1e-15
AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    79   3e-15
AT4G27360.1 | Symbols:  | Dynein light chain type 1 family prote...    75   7e-14
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    51   7e-07

>AT5G20110.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr5:6791542-6793253 REVERSE LENGTH=209
          Length = 209

 Score =  138 bits (348), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 62/90 (68%), Positives = 75/90 (83%), Gaps = 1/90 (1%)

Query: 196 KMVSADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFGS 255
           ++++ADMP FMQ HA  CAR  +DS+EKF+SK +A +LKKEFD  YGPAWHCIVG+SFGS
Sbjct: 118 RILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGS 177

Query: 256 FVTHSVGGFLYFSMDQKLYILLFKTTVQKA 285
           FVTHS G F+YFSMD KLY+LLFKT V+ A
Sbjct: 178 FVTHSTGCFIYFSMD-KLYVLLFKTKVRPA 206


>AT1G23220.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr1:8242614-8244136 FORWARD LENGTH=129
          Length = 129

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 72/106 (67%), Gaps = 5/106 (4%)

Query: 182 SQVDLGDVFAINGAKMVSADMPPFMQIHAVDCARKAIDSME-KFTSKTLALSLKKEFDGV 240
            Q D  D F +   ++ ++DMP   Q  A   +R+ +++   K  +K LA +LKK+FD  
Sbjct: 26  EQQDQKDEFNV---RVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSA 82

Query: 241 YGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYILLFKTTVQKAD 286
           YGPAWHCIVGTSFGS+VTHS GGFLYF +D K+Y+LLFKT V+  D
Sbjct: 83  YGPAWHCIVGTSFGSYVTHSTGGFLYFQID-KVYVLLFKTAVEPLD 127


>AT3G16120.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr3:5465035-5465395 FORWARD LENGTH=93
          Length = 93

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 1/85 (1%)

Query: 195 AKMVSADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFG 254
           AK+   DMP  MQ+ A+  A +++D  + F S ++A  +KKEFD  YG  W C+VGT+FG
Sbjct: 6   AKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFG 65

Query: 255 SFVTHSVGGFLYFSMDQKLYILLFK 279
            F THS G F+YF +   L  L+FK
Sbjct: 66  CFFTHSKGTFIYFHLG-TLNFLIFK 89


>AT4G15930.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:9036344-9037825 FORWARD LENGTH=123
          Length = 123

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 5/87 (5%)

Query: 195 AKMVSADMPPFMQIHAVDCARKAIDSMEKFT-SKTLALSLKKEFDGVYGPAWHCIVGTSF 253
           A + SADM   MQ  A++ A   I + EK++  K +A ++KKEFD  +G  WHCIVG +F
Sbjct: 40  AVIKSADMKDDMQKEAIEIA---ISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNF 96

Query: 254 GSFVTHSVGGFLYFSMDQKLYILLFKT 280
           GS+VTH    F+YF +DQK  +LLFK+
Sbjct: 97  GSYVTHETNHFVYFYLDQKA-VLLFKS 122


>AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
           guanyl-nucleotide exchange factor 11 |
           chr1:19458844-19459235 REVERSE LENGTH=94
          Length = 94

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 2/89 (2%)

Query: 192 INGAKMVS-ADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVG 250
           + G  MV  +DMP  MQ+ A+  A +A+D  + F  K++A  +KKEFD  YG  W C+VG
Sbjct: 2   LEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVG 61

Query: 251 TSFGSFVTHSVGGFLYFSMDQKLYILLFK 279
           ++FG F THS G F+YF + + L  L+FK
Sbjct: 62  SNFGCFFTHSKGTFIYFQL-ETLKFLIFK 89


>AT4G27360.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:13694032-13694517 FORWARD LENGTH=103
          Length = 103

 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 1/90 (1%)

Query: 195 AKMVSADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCIVGTSFG 254
           A M   DM   M+  A+  A KA+D  +      +A  +KKEFD  YG  W CIVGT FG
Sbjct: 6   AVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFG 65

Query: 255 SFVTHSVGGFLYFSMDQKLYILLFKTTVQK 284
           SFVTH  G F++FS+   L ILLFK +V +
Sbjct: 66  SFVTHCSGCFIHFSVGS-LTILLFKGSVGE 94


>AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
           guanyl-nucleotide exchange factor 11 |
           chr1:19455766-19459235 REVERSE LENGTH=607
          Length = 607

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 192 INGAKMVS-ADMPPFMQIHAVDCARKAIDSMEKFTSKTLALSLKKEFDGVYGPAWHCI 248
           + G  MV  +DMP  MQ+ A+  A +A+D  + F  K++A  +KKEFD  YG  W C+
Sbjct: 2   LEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59