Miyakogusa Predicted Gene

Lj4g3v1561740.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1561740.2 Non Chatacterized Hit- tr|I3SP01|I3SP01_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.18,0,RESPONSE_REGULATORY,Signal transduction response
regulator, receiver domain; TWO-COMPONENT RESPONSE ,CUFF.49431.2
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6, RR5 | response regulat...   191   1e-49
AT5G62920.1 | Symbols: ARR6 | response regulator 6 | chr5:252527...   180   2e-46
AT1G74890.1 | Symbols: ARR15 | response regulator 15 | chr1:2813...   168   8e-43
AT1G10470.1 | Symbols: ARR4, MEE7, ATRR1, IBC7 | response regula...   166   3e-42
AT1G59940.1 | Symbols: ARR3 | response regulator 3 | chr1:220658...   165   5e-42
AT1G19050.1 | Symbols: ARR7 | response regulator 7 | chr1:657791...   165   6e-42
AT3G56380.1 | Symbols: ARR17, RR17 | response regulator 17 | chr...   145   8e-36
AT2G40670.1 | Symbols: ARR16, RR16 | response regulator 16 | chr...   144   2e-35
AT2G41310.1 | Symbols: ATRR3, ARR8, RR3 | response regulator 3 |...   144   2e-35
AT3G57040.1 | Symbols: ARR9, ATRR4 | response regulator 9 | chr3...   143   3e-35
AT2G40670.2 | Symbols: RR16 | response regulator 16 | chr2:16970...   139   4e-34
AT5G07210.1 | Symbols: ARR21, RR21 | response regulator 21 | chr...    52   1e-07
AT5G24470.1 | Symbols: APRR5, PRR5 | pseudo-response regulator 5...    50   3e-07
AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | pseudo-response regula...    46   5e-06
AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 | chr...    46   6e-06

>AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6, RR5 | response regulator
           5 | chr3:17759112-17760740 REVERSE LENGTH=184
          Length = 184

 Score =  191 bits (484), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/103 (87%), Positives = 98/103 (95%)

Query: 20  LHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVKVNLI 79
           LHVLAVDDS+VDRK IERLL++SSCKVTVVDS TRALQYLGLDGE NSS+GF+ +K+NLI
Sbjct: 25  LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLI 84

Query: 80  MTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
           MTDYSMPGMTGYELLKKIKESSAFREIPVV+MSSENIL RIDR
Sbjct: 85  MTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDR 127


>AT5G62920.1 | Symbols: ARR6 | response regulator 6 |
           chr5:25252745-25254158 REVERSE LENGTH=186
          Length = 186

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/105 (84%), Positives = 96/105 (91%), Gaps = 1/105 (0%)

Query: 18  DELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVKVN 77
           D LHVLAVDDS VDRK IERLL++SSCKVTVVDS TRALQYLGLD EE S +GF+ +KVN
Sbjct: 23  DPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKS-VGFEDLKVN 81

Query: 78  LIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
           LIMTDYSMPGMTGYELLKKIKESSAFRE+PVV+MSSENIL RIDR
Sbjct: 82  LIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDR 126


>AT1G74890.1 | Symbols: ARR15 | response regulator 15 |
           chr1:28131590-28132710 REVERSE LENGTH=206
          Length = 206

 Score =  168 bits (425), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 93/104 (89%), Gaps = 1/104 (0%)

Query: 19  ELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVKVNL 78
           ELHVLAVDDS VDRKVIERLLKIS+CKVT V+SGTRALQYLGLDG +N S G   +KVNL
Sbjct: 17  ELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDG-DNGSSGLKDLKVNL 75

Query: 79  IMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
           I+TDYSMPG+TGYELLKKIKESSA REIPVV+MSSENI  RI++
Sbjct: 76  IVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQ 119


>AT1G10470.1 | Symbols: ARR4, MEE7, ATRR1, IBC7 | response regulator
           4 | chr1:3442624-3443759 REVERSE LENGTH=259
          Length = 259

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 83/107 (77%), Positives = 96/107 (89%), Gaps = 1/107 (0%)

Query: 16  DSDELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVK 75
           D DE+HVLAVDDSLVDR VIERLL+I+SCKVT VDSG RAL++LGLD E+ +S  FD +K
Sbjct: 30  DLDEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDNEK-ASAEFDRLK 88

Query: 76  VNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
           V+LI+TDY MPGMTGYELLKKIKESS FRE+PVV+MSSEN+LTRIDR
Sbjct: 89  VDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDR 135


>AT1G59940.1 | Symbols: ARR3 | response regulator 3 |
           chr1:22065894-22066895 REVERSE LENGTH=231
          Length = 231

 Score =  165 bits (418), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 99/107 (92%), Gaps = 1/107 (0%)

Query: 16  DSDELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVK 75
           DSD++HVLAVDDSLVDR VIERLL+I+SCKVT VDSG RAL++LGLD ++ +++ FD +K
Sbjct: 29  DSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLD-DDKAAVEFDRLK 87

Query: 76  VNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
           V+LI+TDY MPGMTGYELLKKIKES++F+E+PVV+MSSEN++TRIDR
Sbjct: 88  VDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDR 134


>AT1G19050.1 | Symbols: ARR7 | response regulator 7 |
           chr1:6577919-6579078 REVERSE LENGTH=206
          Length = 206

 Score =  165 bits (418), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/124 (69%), Positives = 100/124 (80%), Gaps = 8/124 (6%)

Query: 5   ATGEVFRRVLE-------DSDELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQ 57
           A GEV R  +         + ELHVLAVDDS+VDRKVIERLL+ISSCKVT V+SGTRALQ
Sbjct: 2   AVGEVMRMEIPAGGDLTVTTPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQ 61

Query: 58  YLGLDGEENSSIGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENIL 117
           YLGLDG + +S     +KVNLI+TDYSMPG++GY+LLKKIKESSAFRE+PVV+MSSENIL
Sbjct: 62  YLGLDGGKGAS-NLKDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENIL 120

Query: 118 TRID 121
            RI 
Sbjct: 121 PRIQ 124


>AT3G56380.1 | Symbols: ARR17, RR17 | response regulator 17 |
           chr3:20905480-20906368 FORWARD LENGTH=153
          Length = 153

 Score =  145 bits (365), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 89/105 (84%)

Query: 18  DELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVKVN 77
           +ELHVLAVDD+L+DRK++ER+LKISSCKVT  ++G RAL+YLGL   + +    + +KVN
Sbjct: 18  EELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVN 77

Query: 78  LIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
           LI+TDY MPGMTG+ELLKK+KESS  +E+PVV++SSENI TRI++
Sbjct: 78  LIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINK 122


>AT2G40670.1 | Symbols: ARR16, RR16 | response regulator 16 |
           chr2:16970258-16971120 FORWARD LENGTH=164
          Length = 164

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/108 (64%), Positives = 90/108 (83%), Gaps = 4/108 (3%)

Query: 18  DELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSI---GFDGV 74
           +ELHVLAVDD+L+DRK++ERLLKIS CKVT  ++  RAL+YLGL G++N  I     + +
Sbjct: 27  EELHVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGL-GDQNQHIDALTCNVM 85

Query: 75  KVNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
           KV+LI+TDY MPGMTG+ELLKK+KESS  RE+PVV+MSSENI TRI++
Sbjct: 86  KVSLIITDYCMPGMTGFELLKKVKESSNLREVPVVIMSSENIPTRINK 133


>AT2G41310.1 | Symbols: ATRR3, ARR8, RR3 | response regulator 3 |
           chr2:17222280-17223536 FORWARD LENGTH=225
          Length = 225

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 90/117 (76%), Gaps = 7/117 (5%)

Query: 13  VLEDSDELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEEN------ 66
           V+E   + HVLAVDDSL DRK+IERLL+ SSC+VT VDSG++AL++LGL  ++N      
Sbjct: 2   VMETESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALS 61

Query: 67  -SSIGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
            S      V++NLI+TDY MPGMTGY+LLKK+KES+AFR IPVV+MSSEN+  RI R
Sbjct: 62  TSPQIHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISR 118


>AT3G57040.1 | Symbols: ARR9, ATRR4 | response regulator 9 |
           chr3:21110059-21111228 FORWARD LENGTH=234
          Length = 234

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/113 (61%), Positives = 88/113 (77%), Gaps = 9/113 (7%)

Query: 19  ELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSS---------I 69
           + HVLAVDDSL DRK+IERLL+ SSC+VT VDSG++AL++LGL    +S+         +
Sbjct: 8   QFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPV 67

Query: 70  GFDGVKVNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSENILTRIDR 122
               V+VNLI+TDY MPGMTGY+LLKK+KESSAFR+IPVV+MSSEN+  RI R
Sbjct: 68  NHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISR 120


>AT2G40670.2 | Symbols: RR16 | response regulator 16 |
           chr2:16970258-16971120 FORWARD LENGTH=165
          Length = 165

 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 90/109 (82%), Gaps = 5/109 (4%)

Query: 18  DELHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSI---GFDGV 74
           +ELHVLAVDD+L+DRK++ERLLKIS CKVT  ++  RAL+YLGL G++N  I     + +
Sbjct: 27  EELHVLAVDDNLIDRKLVERLLKISCCKVTTAENALRALEYLGL-GDQNQHIDALTCNVM 85

Query: 75  KVNLIMTDYSMPGMTGYELLKKIK-ESSAFREIPVVVMSSENILTRIDR 122
           KV+LI+TDY MPGMTG+ELLKK+K ESS  RE+PVV+MSSENI TRI++
Sbjct: 86  KVSLIITDYCMPGMTGFELLKKVKQESSNLREVPVVIMSSENIPTRINK 134


>AT5G07210.1 | Symbols: ARR21, RR21 | response regulator 21 |
           chr5:2252237-2256018 FORWARD LENGTH=621
          Length = 621

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 20/104 (19%)

Query: 19  ELHVLAVDDSLVDRKVIERLLKISSCK--------VTVVDSGTRALQYLGLDGEENSSIG 70
           +++V+ VDD  V   ++ R+L+ S  +        V  VD   +AL  L +  +      
Sbjct: 15  KINVMVVDDDHVFLDIMSRMLQHSKYRDPSVMEIAVIAVDDPKKALSTLKIQRD------ 68

Query: 71  FDGVKVNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSE 114
                ++LI+TDY MPGM G +L K+I +   F  +PV+VMSS+
Sbjct: 69  ----NIDLIITDYYMPGMNGLQLKKQITQE--FGNLPVLVMSSD 106


>AT5G24470.1 | Symbols: APRR5, PRR5 | pseudo-response regulator 5 |
           chr5:8356204-8358873 REVERSE LENGTH=667
          Length = 667

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 10/96 (10%)

Query: 20  LHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVKVNLI 79
           L VL V+     R++I  LL+  S +V  V  G +A + L   G+  S        V+LI
Sbjct: 159 LRVLLVEADDSTRQIIAALLRKCSYRVAAVPDGLKAWEML--KGKPES--------VDLI 208

Query: 80  MTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSEN 115
           +T+  +P ++GY LL  I E    + IPV++MS+++
Sbjct: 209 LTEVDLPSISGYALLTLIMEHDICKNIPVIMMSTQD 244


>AT2G46790.1 | Symbols: APRR9, PRR9, TL1 | pseudo-response regulator
           9 | chr2:19232874-19234901 FORWARD LENGTH=468
          Length = 468

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 20  LHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVKVNLI 79
           L VL V+     R++I  LL+    KV  V  G  A + L    +E S        ++LI
Sbjct: 37  LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVL----KEKSH------NIDLI 86

Query: 80  MTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSEN 115
           +T+  +P ++G+ LL  + E  A + IPV++MSS++
Sbjct: 87  LTELDLPSISGFALLALVMEHEACKNIPVIMMSSQD 122


>AT2G25180.1 | Symbols: ARR12, RR12 | response regulator 12 |
           chr2:10724490-10726961 REVERSE LENGTH=596
          Length = 596

 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 13/96 (13%)

Query: 20  LHVLAVDDSLVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSSIGFDGVKVNLI 79
           + VLAVDD     K++E LL+     VT  +   +AL+ L     EN +      K +L+
Sbjct: 17  MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELL----RENKN------KFDLV 66

Query: 80  MTDYSMPGMTGYELLKKIKESSAFREIPVVVMSSEN 115
           ++D  MP M G++LL+ +       ++PV+++S+ +
Sbjct: 67  ISDVDMPDMDGFKLLELVGLE---MDLPVIMLSAHS 99