Miyakogusa Predicted Gene
- Lj4g3v1561700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1561700.1 Non Chatacterized Hit- tr|B9FSH6|B9FSH6_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,38.89,0.0000004,"Winged helix" DNA-binding domain,NULL;
E2F_TDP,Transcription factor E2F/dimerisation partner
(TDP);,CUFF.49420.1
(383 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48160.2 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:1... 347 8e-96
AT3G48160.1 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 | chr3:1... 313 2e-85
AT3G01330.1 | Symbols: DEL3, E2L2, E2FF | DP-E2F-like protein 3 ... 297 1e-80
AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 | chr5:4... 270 1e-72
AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription fa... 64 1e-10
AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription fa... 64 1e-10
AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 64 2e-10
AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 64 2e-10
AT1G47870.2 | Symbols: ATE2F2 | winged-helix DNA-binding transcr... 59 8e-09
AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix DNA-b... 59 8e-09
AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor 3... 57 2e-08
>AT3G48160.2 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 |
chr3:17783641-17785846 FORWARD LENGTH=403
Length = 403
Score = 347 bits (890), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 197/366 (53%), Positives = 253/366 (69%), Gaps = 12/366 (3%)
Query: 17 HHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLS 76
HH+Y+RKQKSLGLLCTNFL+LYNR+ I ++GLDDAAS+LGVERRRIYDIVNVLES+GVL+
Sbjct: 29 HHSYSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLT 88
Query: 77 RKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEGFGNPSTGS 136
R+AKNQYTWKGF AIP AL+EL++EG+++ F N++ K SDDEDD+E P + S
Sbjct: 89 RRAKNQYTWKGFSAIPGALKELQEEGVKDTFHRF-YVNENVKGSDDEDDDEESSQPHSSS 147
Query: 137 QNEKSMSNSTLPRS---MKNDNRREKSLALLTQNFVKLFLCSN-VEMISXXXXXXXXXXX 192
Q + S S LP+S K DNRREKSL LLTQNF+KLF+CS + +IS
Sbjct: 148 QTDSSKPGS-LPQSSDPSKIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAAKLLLGD 206
Query: 193 XHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVSTSNLN 252
HNTSIMRTKVRRLYDIANVLSSM+LIEKTHT D+RKPAF+WLG G S
Sbjct: 207 AHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGEPTFTLSSDLLQL 266
Query: 253 ESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKS----NLQQD 308
ESRKRAFGTD+TN++ R+++ + ++ K+ ++ S +KS +
Sbjct: 267 ESRKRAFGTDITNVNVKRSKSSSSSQEN--ATERRLKMKKHSTPESSYNKSFDVHESRHG 324
Query: 309 TKQTYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALKELFSHYMEAWR 368
++ Y FGPFAP + N ++ D E+L + + P YQNQ LK+LFSHYM+AW+
Sbjct: 325 SRGGYHFGPFAPGTGTYPTAGLEDNSRRAFDVENLDSDYRPSYQNQVLKDLFSHYMDAWK 384
Query: 369 SWYSEV 374
+W+SEV
Sbjct: 385 TWFSEV 390
>AT3G48160.1 | Symbols: DEL1, E2L3, E2FE | DP-E2F-like 1 |
chr3:17783641-17785688 FORWARD LENGTH=379
Length = 379
Score = 313 bits (801), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 241/354 (68%), Gaps = 14/354 (3%)
Query: 17 HHTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLS 76
HH+Y+RKQKSLGLLCTNFL+LYNR+ I ++GLDDAAS+LGVERRRIYDIVNVLES+GVL+
Sbjct: 29 HHSYSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLT 88
Query: 77 RKAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEGFGNPSTGS 136
R+AKNQYTWKGF AIP AL+EL++EG+++ F N++ K SDDEDD+E P + S
Sbjct: 89 RRAKNQYTWKGFSAIPGALKELQEEGVKDTFHRF-YVNENVKGSDDEDDDEESSQPHSSS 147
Query: 137 QNEKSMSNSTLPRS---MKNDNRREKSLALLTQNFVKLFLCSN-VEMISXXXXXXXXXXX 192
Q + S S LP+S K DNRREKSL LLTQNF+KLF+CS + +IS
Sbjct: 148 QTDSSKPGS-LPQSSDPSKIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAAKLLLGD 206
Query: 193 XHNTSIMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVSTSNLN 252
HNTSIMRTKVRRLYDIANVLSSM+LIEKTHT D+RKPAF+WLG G ++S+ L
Sbjct: 207 AHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGEP-TFTLSSDLLQ 265
Query: 253 -ESRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKS----NLQQ 307
ESRKRAFGTD+TN++ R+++ + ++ K+ ++ S +KS +
Sbjct: 266 LESRKRAFGTDITNVNVKRSKSSSSSQEN--ATERRLKMKKHSTPESSYNKSFDVHESRH 323
Query: 308 DTKQTYQFGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALKELFS 361
++ Y FGPFAP + N ++ D E+L + + P YQNQ LF+
Sbjct: 324 GSRGGYHFGPFAPGTGTYPTAGLEDNSRRAFDVENLDSDYRPSYQNQGAYILFT 377
>AT3G01330.1 | Symbols: DEL3, E2L2, E2FF | DP-E2F-like protein 3 |
chr3:124596-126805 REVERSE LENGTH=354
Length = 354
Score = 297 bits (760), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/360 (45%), Positives = 233/360 (64%), Gaps = 29/360 (8%)
Query: 18 HTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSR 77
Y+RK+KSLG+L +NFL LYNRD++ LIGLDDAA +LGVERRRIYD+VN+LESIG+++R
Sbjct: 17 QIYSRKEKSLGVLVSNFLRLYNRDDVDLIGLDDAAGQLGVERRRIYDVVNILESIGIVAR 76
Query: 78 KAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEGFGNPSTGSQ 137
+ KNQY+WKGF IP +L ELK+EG+RE+ + N+S KVS+ + EE P T +
Sbjct: 77 RGKNQYSWKGFGEIPRSLDELKEEGMRERLG-YSSSNNSDKVSNGCEREE----PLTLTP 131
Query: 138 NEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXXXXXXXXXXXHNTS 197
+++ S+S+ K D ++EKSL LL QNFVK+FLCS+ ++I+ ++
Sbjct: 132 DDQENSSSS-----KMDQKKEKSLWLLAQNFVKMFLCSDDDLITLDSAAKALLSDSPDSV 186
Query: 198 IMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLKGRTGNESVSTSNLNESRKR 257
MRTKVRRLYDIANV +SM+LIEKTH TRKPA+RWLG K +S N E KR
Sbjct: 187 HMRTKVRRLYDIANVFASMNLIEKTHIPVTRKPAYRWLGSKS-IAERGLSLFNSGEP-KR 244
Query: 258 AFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQDTKQT---YQ 314
FGT++TN+ RN+T + + +KQ + + D+ N +Q++K Y
Sbjct: 245 VFGTEITNLRAKRNKT-------YCSSIRKQIGYK------KHDEENTEQESKPAASKYV 291
Query: 315 FGPFAPAYVSKAGNSENSNVKQVHDWESLATAHCPRYQNQALKELFSHYMEAWRSWYSEV 374
FGPF+P SK N++ ++ + E+LA+ + P+Y NQ + L H+ EAW+ WY+EV
Sbjct: 292 FGPFSPIGASKT-NNDKVGKGRLLEIEALASTYQPQYCNQEITGLLGHFTEAWKKWYAEV 350
>AT5G14960.1 | Symbols: DEL2, E2L1, E2FD | DP-E2F-like 2 |
chr5:4843966-4846373 FORWARD LENGTH=359
Length = 359
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 158/367 (43%), Positives = 224/367 (61%), Gaps = 32/367 (8%)
Query: 18 HTYNRKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSR 77
Y+RK KSLG+L NFL+LYNR ++ L GLDDAA++LGVERRRIYD+VN+LESIG+++R
Sbjct: 9 QVYSRKDKSLGVLVANFLTLYNRPDVDLFGLDDAAAKLGVERRRIYDVVNILESIGLVAR 68
Query: 78 KAKNQYTWKGFRAIPLALQELKDEGLREKSSDFDGGNDSGKVSDDEDDEEGFGNPSTGSQ 137
KNQY+WKGF A+P AL ELK+EG++EK + S V +++ EE F S
Sbjct: 69 SGKNQYSWKGFGAVPRALSELKEEGMKEKFAIVPFVAKSEMVVYEKEGEESF----MLSP 124
Query: 138 NEKSMSNSTLPRSMKNDNRREKSLALLTQNFVKLFLCSNVEMISXXXXXXXXXXXXHNTS 197
+++ S S P DNR+E++L LL QNFVKLFLCS+ ++++ + +
Sbjct: 125 DDQEFSPSPRP-----DNRKERTLWLLAQNFVKLFLCSDDDLVTFDSATKALLNESQDMN 179
Query: 198 IMRTKVRRLYDIANVLSSMSLIEKTHTKDTRKPAFRWLGLK----GRTGNESVSTSNLNE 253
MR KVRRLYDIANV SSM LIEKTH +T+KPA+RWLG K R + S S + N
Sbjct: 180 -MRKKVRRLYDIANVFSSMKLIEKTHVPETKKPAYRWLGSKTIFENRFIDGSASLCDRNV 238
Query: 254 SRKRAFGTDVTNISFARNRTDLFMNGDFGQNSKKQKILENDGVLSQADKSNLQQDTKQTY 313
+KRAFGT++TN++ RN++ G ++SK+ V+ Q +++ D K
Sbjct: 239 PKKRAFGTELTNVNAKRNKS-----GCSKEDSKRNGNQNTSIVIKQEQCDDVKPDVKN-- 291
Query: 314 QFGPFAPAYVSKAGNSENSNV-------KQVHDWESLATAHCPRYQNQALKELFSHYMEA 366
FA + AG SE++++ ++ E+L+T + P Y N L LF+HY E
Sbjct: 292 ----FASGSSTPAGTSESNDMGNNIRPRGRLGVIEALSTLYQPSYCNPELLGLFAHYNET 347
Query: 367 WRSWYSE 373
+RS+ E
Sbjct: 348 FRSYQEE 354
>AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
factor 1 | chr5:7360749-7364120 FORWARD LENGTH=466
Length = 466
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F++L + ++ L+ AA L V++RRIYDI NVLE IG++ + KN
Sbjct: 129 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKN 188
Query: 82 QYTWKGF 88
+ WKG
Sbjct: 189 RIQWKGL 195
>AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F transcription
factor 1 | chr5:7360749-7364120 FORWARD LENGTH=469
Length = 469
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F++L + ++ L+ AA L V++RRIYDI NVLE IG++ + KN
Sbjct: 129 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKN 188
Query: 82 QYTWKGF 88
+ WKG
Sbjct: 189 RIQWKGL 195
>AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=485
Length = 485
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 10/98 (10%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F++L + ++ L+ AA L V++RRIYDI NVLE I ++ + KN
Sbjct: 167 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKN 226
Query: 82 QYTWKGFRAIP---------LALQ-ELKDEGLREKSSD 109
+ WKG A P L LQ E+++ L E++ D
Sbjct: 227 RILWKGVDACPGDEDADVSVLQLQAEIENLALEEQALD 264
>AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=483
Length = 483
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F++L + ++ L+ AA L V++RRIYDI NVLE I ++ + KN
Sbjct: 167 RYDSSLGLLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKN 226
Query: 82 QYTWKGFRAIP 92
+ WKG A P
Sbjct: 227 RILWKGVDACP 237
>AT1G47870.2 | Symbols: ATE2F2 | winged-helix DNA-binding
transcription factor family protein |
chr1:17634937-17637557 FORWARD LENGTH=395
Length = 395
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F+ L + L+ A L V++RRIYDI NVLE IG++ + KN
Sbjct: 154 RYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKN 213
Query: 82 QYTWKGFRAIPLALQELKDEGLREKS 107
WKG A L ++L D+ R KS
Sbjct: 214 HIRWKG--ADNLGQKDLGDQISRLKS 237
>AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix
DNA-binding transcription factor family protein |
chr1:17634937-17637557 FORWARD LENGTH=396
Length = 396
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 22 RKQKSLGLLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKN 81
R SLGLL F+ L + L+ A L V++RRIYDI NVLE IG++ + KN
Sbjct: 155 RYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKN 214
Query: 82 QYTWKGFRAIPLALQELKDEGLREKS 107
WKG A L ++L D+ R KS
Sbjct: 215 HIRWKG--ADNLGQKDLGDQISRLKS 238
>AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F transcription factor 3 |
chr2:15119688-15122893 FORWARD LENGTH=514
Length = 514
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 29 LLCTNFLSLYNRDNIHLIGLDDAASRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGF 88
LL F++L + ++ L+ AA L V++RRIYDI NVLE I ++ + KN+ WKG
Sbjct: 220 LLTKKFVNLIKQAKDGMLDLNKAAETLEVQKRRIYDITNVLEGIDLIEKPFKNRILWKGV 279
Query: 89 RAIP---------LALQ-ELKDEGLREKSSD 109
A P L LQ E+++ L E++ D
Sbjct: 280 DACPGDEDADVSVLQLQAEIENLALEEQALD 310