Miyakogusa Predicted Gene

Lj4g3v1560530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1560530.1 tr|I8RPS3|I8RPS3_YERPE Ribosomal RNA small
subunit methyltransferase G OS=Yersinia pestis PY-102
GN=,42.75,2e-19,no description,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY
NOT NAMED,NULL; GidB,rRNA small subunit methyl,CUFF.49404.1
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50110.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...   191   2e-49

>AT5G50110.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:20373515-20376068 FORWARD LENGTH=292
          Length = 292

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 120/164 (73%), Gaps = 9/164 (5%)

Query: 7   FSPGTFIKHLT--------SRKFTTHCLHKSS-TPSLSHFGTLTSRQKDQIHLYVDALLQ 57
            S G  IKHL          R+F    L  ++ + + S F TL+S Q+DQIHLYVD LLQ
Sbjct: 21  LSLGHLIKHLPCTKSHTFLRRRFHYKALSNATVSTTASCFKTLSSSQQDQIHLYVDTLLQ 80

Query: 58  WNKRMNLTAVREVNQVMERHVEDSLAILPPLSDCYRAHCGGSGDKLSLVDVGTGAGLPGV 117
           WN++MNLTA +E ++VMERH+EDSLAILPP+  CY  H     D ++L+DVG+GAGLPG+
Sbjct: 81  WNQKMNLTATKEADEVMERHIEDSLAILPPIKTCYNLHSSDLFDHINLIDVGSGAGLPGL 140

Query: 118 VLAIARPEWDVTLLESMNKRCVFLEHVVSVVGSSNIQVVRGRAE 161
           VLAIA P+W VTLLES+NKRCVFLEHVV+V G +N+ +VRGRAE
Sbjct: 141 VLAIACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAE 184