Miyakogusa Predicted Gene

Lj4g3v1559460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1559460.1 tr|B6TYH2|B6TYH2_MAIZE ROS1 protein OS=Zea mays
PE=2 SV=1,52.81,3e-18,DNA-glycosylase,DNA glycosylase,CUFF.49395.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47830.1 | Symbols:  | DNA glycosylase superfamily protein | ...   108   1e-24

>AT3G47830.1 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:17647069-17648346 FORWARD LENGTH=293
          Length = 293

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/135 (43%), Positives = 80/135 (59%), Gaps = 21/135 (15%)

Query: 1   MEKRRKRKQQEVAELKEQPPPQPKSVRVEENLKNPFPSHTRPTPQECQTVRDTLLSLHGI 60
           M K +KRK+    + + + P    +V    +  NP+P+  RPT +EC+ VRD LLSLHG 
Sbjct: 1   MSKAQKRKRLNKYDGESKTPANKSTV----DGGNPYPTLLRPTAEECRDVRDALLSLHGF 56

Query: 61  PPELAKYRQ-----------------LQPPNSGTEPEETVLDGLVRTVLSQNTTEANSQK 103
           PPE A YR+                 L+        EE+VLDGLV+ +LSQNTTE+NSQ+
Sbjct: 57  PPEFANYRRQRLRSFSAVDDHDTQCNLKSETLNETEEESVLDGLVKILLSQNTTESNSQR 116

Query: 104 AFASLKSSFPDWELV 118
           AFASLK++FP W+ V
Sbjct: 117 AFASLKATFPKWDDV 131