Miyakogusa Predicted Gene

Lj4g3v1535120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1535120.1 Non Chatacterized Hit- tr|B9RB56|B9RB56_RICCO
RNA-dependent RNA polymerase, putative OS=Ricinus comm,63.89,3e-18,
,CUFF.49358.1
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase...    65   8e-12

>AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2
           | chr4:6780522-6784390 FORWARD LENGTH=1133
          Length = 1133

 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)

Query: 9   KLPYEDLFQLNCLVHTQKISL-ASVDDELIDLFGSLTDETKAMVFQKFHKLNSTCYEPLK 67
           + PYE LFQLN LVH QKISL A+ D ELI +   ++ ET  ++ +K H+ +S CY+P+ 
Sbjct: 290 EFPYEILFQLNALVHAQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVF 349

Query: 68  FVNNQ 72
           FV  Q
Sbjct: 350 FVKTQ 354