Miyakogusa Predicted Gene

Lj4g3v1535110.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1535110.1 tr|G7JNT8|G7JNT8_MEDTR Rna-dependent RNA
polymerase OS=Medicago truncatula GN=MTR_4g106660 PE=4
SV=1,78.55,0,RdRP,RNA-dependent RNA polymerase, eukaryotic-type;
RNA-DEPENDENT RNA POLYMERASE,RNA-dependent RNA p,CUFF.49363.1
         (1122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase...  1395   0.0  
AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymer...   759   0.0  
AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA poly...   553   e-157
AT2G19930.1 | Symbols:  | RNA-dependent RNA polymerase family pr...   120   4e-27
AT2G19920.1 | Symbols:  | RNA-dependent RNA polymerase family pr...   107   4e-23
AT2G19910.1 | Symbols:  | RNA-dependent RNA polymerase family pr...   105   1e-22

>AT4G11130.1 | Symbols: RDR2, SMD1 | RNA-dependent RNA polymerase 2 |
            chr4:6780522-6784390 FORWARD LENGTH=1133
          Length = 1133

 Score = 1395 bits (3612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1123 (60%), Positives = 842/1123 (74%), Gaps = 18/1123 (1%)

Query: 5    TGKPTVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDLAT 64
            T + TV+I N+PQ+  A +LL FL+   G  +++ALEI +   NWK R   RVQF  L  
Sbjct: 7    TNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEV 66

Query: 65   KSRALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDD-FVIL 123
            KSRA  L+   KL+FK+H LRLSE  DDIIPRP  P+ RL++ +L  GF    +  F  L
Sbjct: 67   KSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCAL 126

Query: 124  DTWDGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLK 183
            + WDGV+ WI+ E+R++EFWVW  G+CYK+E+ FEDI+ET+      D    DA +LKLK
Sbjct: 127  EKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLK 186

Query: 184  YGPRIYQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEES 243
            YGP++++R +   IA+KFK+DRY FCK+D +F+W+RTTDFS  KSIG ST F  E+   S
Sbjct: 187  YGPKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 245

Query: 244  SSLDVFQSFPLYRVSLKDLN-LDQKYSCSATETVPLVKCGP-GSKLPYEDLFQLNCLVHT 301
            + LD+F   P YR     L  +D K   SA + VPL+     G + PYE LFQLN LVH 
Sbjct: 246  TMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHA 305

Query: 302  QKISLASVND-ELIALFGSLTDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRH 360
            QKISL + +D ELI +   ++ ET  ++ +KLH+ +S CYDP+ FV TQ+  +  + K  
Sbjct: 306  QKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHS 365

Query: 361  LPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDW 420
              SA KRL + NIMSC RA +TP+KIY LGPELET+N+VVK+FA++ SDFMR+TFVEEDW
Sbjct: 366  PASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDW 425

Query: 421  SKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVW 480
            SKLP+NA+S    +G F KP +T IY R+L+IL +GI +G KRFEFLAFSASQLR NSVW
Sbjct: 426  SKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVW 485

Query: 481  VFASNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEVN 540
            +FASN+ VKA DIREWMGCF  IRS+SKCAARMGQLFS+S+QT  V  Q+VE IPDIEV 
Sbjct: 486  MFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVT 545

Query: 541  SDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKLS 600
            +DG DYCFSDGIGKISL+FA+QVAQK  L  S +PSAFQIRYGGYKGVIA+DR SFRKLS
Sbjct: 546  TDGADYCFSDGIGKISLAFAKQVAQKCGL--SHVPSAFQIRYGGYKGVIAVDRSSFRKLS 603

Query: 601  LRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGRM 660
            LR SMLKF+S+NRML VT+W+ESMPCFLNREII LLSTLG++D    AMQ   L +LG M
Sbjct: 604  LRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNM 663

Query: 661  LTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCRI 720
            L DR+AAL+VL+ LSG +SK++LVKML Q Y P+SEPYLSMML+ H+  QLS+LKSRCRI
Sbjct: 664  LEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRI 723

Query: 721  CVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDS-LRKVDGDDSTRIIVGKVIV 779
             VPKGR+L+GC+DE GIL YGQV+VRVT+ K    S D S  RK+  D+ T +++GKV+V
Sbjct: 724  LVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKI--DEETSVVIGKVVV 781

Query: 780  TKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWD 839
            TKNPCLHPGD+RVLDAIY    EE G  DC++FPQKG RPHPNECSGGDLDGD FF+SWD
Sbjct: 782  TKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWD 841

Query: 840  KDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPD 899
            + +IP + + PMDY   RPR+MDH VTLEEI +FFVDYMI+DTLG ISTAHLVHADR+P+
Sbjct: 842  EKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPE 901

Query: 900  KARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLY 959
            KARS KCLELA LHS AVDFAKTGAPA MP  LKPR FPDF+ERFEKP YIS  V GKLY
Sbjct: 902  KARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLY 961

Query: 960  RALVESKLQASSNVVWSEKLAED--AYDLNLEANGFEAFLETASSHKEMYAEKMTALMKF 1017
            RA+  S  Q        E  +ED  AYD+ LE  GFE+F+ETA +H++MY EK+T+LM +
Sbjct: 962  RAVKSSLAQRK-----PEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIY 1016

Query: 1018 YGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFEADCQ-QHEY 1076
            YGA  E+E+LTG L+ +  YL RDNRRY DMKDRI +SVKDL +EA  WFE  C+ + + 
Sbjct: 1017 YGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQK 1076

Query: 1077 QAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILLHIKSVNSK 1119
            + +ASAWY+VTY+P +  E  +FLSFPWIVGD+LL IK+ N++
Sbjct: 1077 KKLASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQ 1119


>AT1G14790.1 | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1
            | chr1:5094317-5097817 REVERSE LENGTH=1107
          Length = 1107

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1128 (39%), Positives = 666/1128 (59%), Gaps = 63/1128 (5%)

Query: 9    TVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRV----QFEDLAT 64
            T+++F  P   +A+++  FL+   G  ++YA+++         +G  RV    QF     
Sbjct: 4    TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKV-----RQPKKGGPRVYAIVQFTS-ER 57

Query: 65   KSRALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILD 124
             +R +  A +++L +   +L+  E   DI+P+P    H ++   +  G  V    F+ L 
Sbjct: 58   HTRLIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLW 117

Query: 125  TWDGVQGWIMPERRKLEF-WVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLK 183
            +   V        RKL F + W+Q + Y+LE+ +E+I +   ++    G+    L++++ 
Sbjct: 118  SAQDVCVSFGIGMRKLHFSFSWYQKD-YRLELSYENIWQIDLHSP--QGRSSKFLVIQVI 174

Query: 184  YGPRIYQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEES 243
              P+I++++  P I   F      F  D  +  W+RTTDF+    IG ST+F  E+    
Sbjct: 175  GAPKIFEKEDQP-INLLFGI--MDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHL 231

Query: 244  SSLDVFQSFPLY---RVSLKDLNLDQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCLVH 300
            +  D  ++F  Y   R S   +     YS +A   VP+V   PG  LP+E LF+LN LV 
Sbjct: 232  NVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQ 291

Query: 301  TQKISLASVNDELIALFGSLTDETKAMV---FQKLHKLNSTCYDPLEFVNTQLHVLSSRR 357
               +S  +++ +   L        +A++    +KL  L   CY+P  ++  +     S+ 
Sbjct: 292  NACLSGPALDLDFYRLLNQ-KKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKG 350

Query: 358  KRHLPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVE 417
            K  LP +     D+ ++  +R  +TP ++Y  GPE+  SN V++H+++Y ++F+R++FV+
Sbjct: 351  K--LPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVD 408

Query: 418  EDWSKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSN 477
            ED  K+ S  +S        S   +T++Y RI ++LRDGIVIG K+FEFLAFS+SQLR N
Sbjct: 409  EDLEKVRSMDLSPRS-----STQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLREN 463

Query: 478  SVWVFASNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDI 537
            S W+FA  D + AA IR WMG F++IR+V+K AAR+GQ FSSS++T  V   E+E+IPD+
Sbjct: 464  SAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDV 523

Query: 538  EVNSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFR 597
            E+ S G  Y FSDGIGKIS  FAR+VA+K  L +   PSAFQIRYGGYKGV+A+D +S +
Sbjct: 524  EIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFS-PSAFQIRYGGYKGVVAVDPNSSK 582

Query: 598  KLSLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLL 657
            KLSLR SM KFES+N  L V  WS+  PC++NR++I+LLSTLGV D      Q+E +  L
Sbjct: 583  KLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRL 642

Query: 658  GRMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSR 717
              +LT    A + L  ++  ++ +IL  ++   Y+P++EP+LSMML+     +L +L+++
Sbjct: 643  DAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTK 702

Query: 718  CRICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKV 777
             RI +  GR ++GCLDET  L YGQV V+ +          D +R         II G V
Sbjct: 703  TRIFISGGRSMMGCLDETRTLEYGQVVVQYS----------DPMRP----GRRFIITGPV 748

Query: 778  IVTKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFIS 837
            +V KNPCLHPGDVRVL A+    L  N M DC+VFPQKG RPHPNECSG DLDGD++F+ 
Sbjct: 749  VVAKNPCLHPGDVRVLQAVNVPAL--NHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVC 806

Query: 838  WDKDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADRE 897
            WD++L+P +T EPMDYT    +I+DH VT+EE++++F +Y++ND+LG I+ AH   AD+E
Sbjct: 807  WDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKE 866

Query: 898  PDKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGK 957
            P KA S  C+ELA+  S AVDF KTG  A +P+ L  + +PDFME+ +KP Y S  V+GK
Sbjct: 867  PLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGK 926

Query: 958  LYRALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKF 1017
            L+R + E      S   ++  +A  +YD ++E +GFE +++ A   K  Y  K+  LM +
Sbjct: 927  LFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDY 986

Query: 1018 YGAETEDELLTGNLQNRASYLQRDNRRYTDMKD--RILISVKDLQREAKEWFEADCQQHE 1075
            YG +TE E+L+G        + R ++ +T  +D   I  +V+ L++E    F A  ++  
Sbjct: 987  YGIKTEAEILSGG-------IMRMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEEN 1039

Query: 1076 YQAMASAWYHVTYHPKY---YHES---SSFLSFPWIVGDILLHIKSVN 1117
              A ASAWYHVTYH  Y   Y+E      FLSF W V D L+ IK  N
Sbjct: 1040 ESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTN 1087


>AT3G49500.1 | Symbols: RDR6, SGS2, SDE1 | RNA-dependent RNA
            polymerase 6 | chr3:18349193-18353205 REVERSE LENGTH=1196
          Length = 1196

 Score =  553 bits (1424), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 415/1207 (34%), Positives = 594/1207 (49%), Gaps = 153/1207 (12%)

Query: 10   VRIFNIPQSATAKDLLAFLKSTFG-------------PSSIYALEIFSDYSNW------- 49
            V I    +S TAK L  +L+   G             P S    EI +D SN        
Sbjct: 15   VSIGGFGESTTAKQLTDYLEDEVGIVWRCRLKTSWTPPGSYPNFEI-ADTSNIPSIDEYK 73

Query: 50   KSRGSGRVQFEDLATKSRALSLAESQKLIFKSHFLRLSENSDDIIPRPP--LPQHR---- 103
            K      V F    +  RA+  A    LI     L++S     + P+ P  L Q R    
Sbjct: 74   KVEPHAFVHFAVFESAGRAMDAAGQCNLILDGQPLKVS-----LGPKNPYSLNQRRRTTV 128

Query: 104  ---LNNTILNAGFTVGPDDFVILDTWDGVQGWIMPERRKLEFWVW------FQGEC---- 150
               L    L  G  V  DDF +    +GV   + P     +F         F+       
Sbjct: 129  PYKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAV 188

Query: 151  ----YKLEIPFEDILETVGYASGDDGKPPDALILKLKYGPRIYQRKSGPDIASKFKADRY 206
                YKLE+   DI     Y +         LIL+L   PR++ R +  DI      D  
Sbjct: 189  INCDYKLELLVRDIQTVRQYKTLHGF----VLILQLASSPRVWYRTADDDIYDTVPGDLL 244

Query: 207  HFCKDDIEFLWVRTTDFSPIKSIG--HSTSFFWEIDEESSSLDVFQSFPLYRVSLKDLNL 264
                      W+RTTDF+ + +IG  HS         E+        F + RV  + +  
Sbjct: 245  DDDDP-----WIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRW 299

Query: 265  DQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCLVHTQKISLASVNDELIALFGSLTDET 324
                        P ++  P    P  D F   C+ H + IS      E++ L  S+    
Sbjct: 300  P-----------PRIRNEPCFGEPVSDHF--FCIHHKEGISF-----EIMFLVNSVLHRG 341

Query: 325  KAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRR----KRHLPSAQKRLA----------- 369
                FQ    L    +D L      +++ S +     KR +  A KRL            
Sbjct: 342  VFNQFQ----LTERFFDLLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPK 397

Query: 370  -------DNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDWSK 422
                     +I    R +ITPT+ YCL PE+E SN V++ +   A  F+R+TF++E    
Sbjct: 398  LLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQT 457

Query: 423  LPSNAVSTTVH---KGIFSKPF--KTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSN 477
            + SN +S  V    K + S  F  KT ++KR+ +IL DG  +  +++ FLAFSA+QLR  
Sbjct: 458  INSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDR 517

Query: 478  SVWVFASNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEI-IPD 536
            S W FA +   + +DI+ WMG F + ++V+KCAARMG  FSS+  T +V+P EV+  +PD
Sbjct: 518  SAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPD 576

Query: 537  IEVNSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIAL--DRH 594
            IE N     Y FSDGIG I+   A +V +KLKLD    P A+QIRY G+KGV+A    + 
Sbjct: 577  IERNG----YVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKS 632

Query: 595  SFRKLSLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQL 654
               +L+LR SM KF S + +L +  W+   P FLNR+II+LLS LGV DE    MQ+  L
Sbjct: 633  DGIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESML 692

Query: 655  HLLGRMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDL 714
            + L R+L D + A +VL + S  +  +    ML   ++P +EP+L  ML +    QL  L
Sbjct: 693  YKLNRILDDTDVAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGL 751

Query: 715  KSRCRICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENS-GDDSLRKVDGDDSTRII 773
            + + RI V  GR L+GCLDE GIL +GQ F++V+   ++EN       R  +      ++
Sbjct: 752  REKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVS-KPSIENCFSKHGSRFKETKTDLEVV 810

Query: 774  VGKVIVTKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDL 833
             G V + KNPCLHPGDVR+L+A+   +L    M DCL+FPQKG RPH NE SG DLDGDL
Sbjct: 811  KGYVAIAKNPCLHPGDVRILEAVDVPQLHH--MYDCLIFPQKGDRPHTNEASGSDLDGDL 868

Query: 834  FFISWDKDLIPC--KTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHL 891
            +F++WD+ LIP   K+   M Y A   + +   V  ++I  FF   + N+ LG I  AH+
Sbjct: 869  YFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHV 928

Query: 892  VHADREPDKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYIS 951
            VHADR    A   +CL LA+L + AVDF KTG   +MP  LKP+++PDFM + +   Y S
Sbjct: 929  VHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKS 988

Query: 952  NGVLGKLYRALVE---SKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYA 1008
            N +LG+LYR + E      +ASS    S   +   YD  LE  GFE  +  A  HK +Y 
Sbjct: 989  NKILGRLYRRVKEVYDEDAEASSEE--STDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYD 1046

Query: 1009 EKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFE 1068
             ++  L+  Y  + E+E++TG++ +   Y    +++  ++K+R+  S   L++E ++ FE
Sbjct: 1047 GQLIGLLGQYKVQKEEEIVTGHIWSMPKYT---SKKQGELKERLKHSYNSLKKEFRKVFE 1103

Query: 1069 ADCQQHE----------YQAMASAWYHVTYHPKYYHES-----------SSFLSFPWIVG 1107
                 HE          Y+  ASAWYHVTYHP++  +S           ++ LSF WI  
Sbjct: 1104 ETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAA 1163

Query: 1108 DILLHIK 1114
            D L  IK
Sbjct: 1164 DYLARIK 1170


>AT2G19930.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8607533-8612441 REVERSE LENGTH=977
          Length = 977

 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 157/592 (26%), Positives = 252/592 (42%), Gaps = 114/592 (19%)

Query: 452 ILRDGIVIGSKRFEFLAFSASQ-----------------LRSNSVWVF-ASNDHV-KAAD 492
           I ++GI+IG +R++F  F                     +R++S   +   N ++     
Sbjct: 270 IAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKS 329

Query: 493 IREWMGCFNNIRSVSKCAARMGQ--LFSSSKQTFEVLPQEVEI--IPDIEV-NSDGVDY- 546
           I E    F ++      A  M +  L  S  +T EV    +    I DI   + DG D  
Sbjct: 330 IYEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITFDQIDDIHCHDQDGKDVL 389

Query: 547 ------CF-SDGIGKISLSFAR----QVAQKLKLDQSRIPSA----------FQIRYGGY 585
                 C  SDG G IS   AR     + +   L    I  A          F++ Y GY
Sbjct: 390 DKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGY 449

Query: 586 --KGVIALDRH-SFRKLSLRGSMLKFESD---------NRMLCVTKWSESMPCFLNREII 633
             KG   L++    R + +R SM+K   D         N +  VT  +      L++ ++
Sbjct: 450 AVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLV 509

Query: 634 SLLSTLGVKDEALLAMQQEQLHLLGRMLTDREAALDVLESLSGVDSKS----ILVKMLHQ 689
           +LLS  G+ +E  L +    L     +  ++ AAL+   +   +D ++    ILV +   
Sbjct: 510 ALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGI--P 567

Query: 690 FYEPNSEPYLSMMLKAHYTEQLSDLKSRCRICVPKGRLLVGCLDETGILNYGQVFVRVTV 749
             EP+ + YLS++LK   TE+ +DLK+  ++ V +   L+G +D TG L   +V V    
Sbjct: 568 LDEPHLKNYLSILLK---TEK-NDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCV---- 618

Query: 750 NKTMENSGDDSLRKVDGDDSTRIIVGKVIVTKNPCLHPGDVRVLDAIYHEELEE--NGMR 807
              +  SG               I G+V+V +NP LH GD+ +L A Y + LEE     +
Sbjct: 619 ---ILESGQ--------------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSK 661

Query: 808 DCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIP-CKTEEP--------MDYTARRP 858
             + FPQKG R   +E +GGD DGD++FIS + +L+   K  EP           + R P
Sbjct: 662 FAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAP 721

Query: 859 RIMD--HMVTLEEIQQFFVDYMINDTLGAISTAHLVHADR---------EPDKARSSKCL 907
             +    +            +  ++ +G  + + L   DR         E       K L
Sbjct: 722 SQLSPEELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKML 781

Query: 908 ELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLY 959
           EL  ++  A+D  K G    +P  LKP +FP +MER +K  + S  +LG ++
Sbjct: 782 ELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIF 831


>AT2G19920.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8602222-8606887 REVERSE LENGTH=927
          Length = 927

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 144/594 (24%), Positives = 241/594 (40%), Gaps = 110/594 (18%)

Query: 446 YKRILTILRDGIVIGSKRFEFLAFS----ASQLRSNSV----------WVFASNDH---- 487
           Y +   I ++GI++G +R++F  F     A + + NS              AS+D     
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327

Query: 488 -VKAADIREWMGCFNNIRSVSKCAARMGQ--LFSSSKQTFEVLPQEVEI--IPDIE---- 538
            +    I E    F ++ ++   A  M +  L  S  +  EV   E+ +  I DI     
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQ 387

Query: 539 -----VNSDGVDYCFSDGIGKISLSFARQVAQKLKLDQS------------RIPSAFQIR 581
                ++ +G     SDG G IS   AR     +   +S              P   QIR
Sbjct: 388 SNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIR 447

Query: 582 Y----GGYKGVIALDRH-SFRKLSLRGSMLK---------FESDNRMLCVTKWSESMPCF 627
                   KG+  L+++   + + +R SM+K         F + N +  VT  +      
Sbjct: 448 MFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAK 507

Query: 628 LNREIISLLSTLGVKDEALLAMQQEQLHLLGRMLTDREAALDVLESLSGVDSKSILVKML 687
           L++ +++LLS  GV ++  L +    L     +     AA         +D K+ L  ++
Sbjct: 508 LSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNMDDKNALQMIM 567

Query: 688 HQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCRICVPKGRLLVGCLDETGILNYGQVFVRV 747
                P  EPYL   L      +  DLK+  ++ + +   L+G +D TG L   +V    
Sbjct: 568 AGI--PLDEPYLKHYLSKLLKLEKDDLKA-GKLPIDESYYLMGTVDPTGELKEDEV---- 620

Query: 748 TVNKTMENSGDDSLRKVDGDDSTRIIVGKVIVTKNPCLHPGDVRVLDAIYHEELEE--NG 805
                +  S D                  V+V +NP LH GD+ +L A Y + LE+    
Sbjct: 621 ---SGLAKSQD------------------VLVYRNPGLHFGDIHILKATYVKSLEQYVGN 659

Query: 806 MRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLI-------PCKTEEPMD--YTAR 856
            +  + FPQKG R   +E +GGD DGD++FIS +  L+       P  +  P    YT R
Sbjct: 660 SKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGR 719

Query: 857 RPRIMDHMVTLEEIQQFFVD--YMINDTLGAISTAHLVHADR---------EPDKARSSK 905
           +P  +      EE+ + F+   +  +  +G  + + L   DR         +       K
Sbjct: 720 QPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKK 779

Query: 906 CLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLY 959
            L+L  ++  A+D  KTG    +P  +K  +FP +MER     + S  +LG ++
Sbjct: 780 MLKLTDIYYDAIDAPKTGTEVNLPLDVKVDLFPHYMER--NKTFKSTSILGLIF 831


>AT2G19910.1 | Symbols:  | RNA-dependent RNA polymerase family
           protein | chr2:8595820-8600757 REVERSE LENGTH=992
          Length = 992

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 153/630 (24%), Positives = 250/630 (39%), Gaps = 129/630 (20%)

Query: 426 NAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAF---------------- 469
           N ++    K +  + +  ++Y     I ++GI++G +R+ F  F                
Sbjct: 248 NVLTVKFDKVLGVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKG 307

Query: 470 ---------SASQLRSNSVWVFASNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSS 520
                    S + +   + ++FA     +A   R      N + S+    +R   + S +
Sbjct: 308 VKCYFIRTDSTASIDMQNPYIFAGKSMHEA---RMHFMHVNTLSSLPNYMSRFSLILSKT 364

Query: 521 KQTFEVLPQEV--EIIPDIE---------VNSDGVDYCFSDGIGKISLSFAR----QVAQ 565
           K T EV    +  E I DI          ++ +G     SDG G IS   AR     + +
Sbjct: 365 K-TLEVDMTGITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFK 423

Query: 566 KLKLDQSRIPSA-------------------FQIRYGGY--KGVIALDRH-SFRKLSLRG 603
              +  + I S                    F+I Y GY  KG    ++    R + +R 
Sbjct: 424 GKSMRSNNIQSKNLNFEGQGPCGQEPPLLIQFRIFYNGYAVKGTFLTNKKLPPRTVQVRP 483

Query: 604 SMLKFESD---------NRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQL 654
           SM+K   D         N +  VT  +      L+R +++LLS  GV ++  L + +  L
Sbjct: 484 SMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTL 543

Query: 655 HLLGRMLTDREAALDVLESLSGVDSKS---ILVKMLHQFYEPNSEPYLSMMLKAHYTEQL 711
                +     AA     +  G D  +   ILV +      P  EPYL   L      + 
Sbjct: 544 EESKTIFYSERAAFKAAINY-GDDQYTADMILVGI------PLDEPYLKDRLSYLLKTER 596

Query: 712 SDLKSRCRICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTR 771
           + LK+  R  + +   ++G +D TG L   ++ V       + +SG              
Sbjct: 597 NALKA-GRFPIDESYYIMGTVDPTGELKENEICV-------ILHSGQ------------- 635

Query: 772 IIVGKVIVTKNPCLHPGDVRVLDAIYHEELEE--NGMRDCLVFPQKGHRPHPNECSGGDL 829
            I G V+V +NP LH GD+ VL A Y + LE+     +  + FPQKG R   +E +GGD 
Sbjct: 636 -ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDF 694

Query: 830 DGDLFFISWDKDLIP-CKTEEP--------MDYTARRPRIMDHMVTLEEIQQFFVD--YM 878
           DGD++FIS +  L+   K  EP          Y  R+P  +      EE+ + F+   + 
Sbjct: 695 DGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPSELSEEELEEELFKMFLKARFC 754

Query: 879 INDTLG-------AISTAHLVHADREPDKA--RSSKCLELAQLHSMAVDFAKTGAPAAMP 929
             D +G        I    L   D    +   R    L+L  ++  A+D  K GA   +P
Sbjct: 755 KRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILKLIDIYYDALDAPKKGAKVDLP 814

Query: 930 RVLKPRVFPDFMERFEKPMYISNGVLGKLY 959
             L+ + FP +MER  K  + S  +LG ++
Sbjct: 815 PDLEIKNFPHYMERDPKRDFRSTSILGLIF 844