Miyakogusa Predicted Gene

Lj4g3v1535060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1535060.1 tr|Q1XG54|Q1XG54_CRYJA Similarity to ribonuclease
III OS=Cryptomeria japonica PE=2 SV=1,38.21,1e-17,RNase III
domain-like,Ribonuclease III domain; Ribonuclease III
family,Ribonuclease III domain; no d,CUFF.49408.1
         (179 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24450.1 | Symbols: NFD2 | Ribonuclease III family protein | ...   164   3e-41

>AT1G24450.1 | Symbols: NFD2 | Ribonuclease III family protein |
           chr1:8664201-8665077 FORWARD LENGTH=191
          Length = 191

 Score =  164 bits (416), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 98/140 (70%)

Query: 30  SPFPSALETLQKQLGYNFKTISLLRRAMTHASFSEENNKALSILGAAVIETSASFHLISK 89
           SPF + L  LQ Q+GY F  I+LLRRAMTHASFS+ENNKALSI G  +IET+ S   ++K
Sbjct: 42  SPFATDLAKLQTQIGYKFNNINLLRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLAK 101

Query: 90  DIDISAKELNRRLSQVSNVESSCAVDGVHLGLHKVVRVSPKTNSSAPAVVCXXXXXXXXX 149
           DIDIS+K L R +S+VSNVESSCA+DG  LGL K++RVS KT++S  A++C         
Sbjct: 102 DIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFGA 161

Query: 150 XXXDTGKSDDAGNVFWTIHG 169
              D G  D+A  VFW +HG
Sbjct: 162 IAIDAGTVDEAIKVFWKVHG 181