Miyakogusa Predicted Gene
- Lj4g3v1534960.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1534960.1 Non Chatacterized Hit- tr|I3S5L9|I3S5L9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.53,0,F-box,F-box domain, cyclin-like; F_box_assoc_1: F-box
protein interaction domain,F-box associated in,CUFF.49352.1
(384 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 94 1e-19
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 83 3e-16
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 83 3e-16
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 79 6e-15
AT3G10430.1 | Symbols: | F-box and associated interaction domai... 74 2e-13
AT1G70960.1 | Symbols: | F-box and associated interaction domai... 65 1e-10
AT2G17310.1 | Symbols: SON1 | F-box and associated interaction d... 61 1e-09
AT3G17710.1 | Symbols: | F-box and associated interaction domai... 57 2e-08
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-54... 57 2e-08
AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box asso... 56 4e-08
AT3G51171.1 | Symbols: | F-box and associated interaction domai... 54 1e-07
AT4G21240.1 | Symbols: | F-box and associated interaction domai... 54 2e-07
AT4G19940.1 | Symbols: | F-box and associated interaction domai... 54 2e-07
AT2G02030.1 | Symbols: | F-box family protein | chr2:482335-483... 54 2e-07
AT3G52320.1 | Symbols: | F-box and associated interaction domai... 54 3e-07
AT5G10340.1 | Symbols: | F-box family protein | chr5:3253122-32... 50 2e-06
AT1G30790.1 | Symbols: | F-box and associated interaction domai... 50 2e-06
AT5G44220.1 | Symbols: | F-box family protein | chr5:17810477-1... 50 3e-06
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 164/390 (42%), Gaps = 56/390 (14%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNH-----LHKSARNNHCLFT 62
LP E+ EIL LPVK+L +FKCVC SW+SLIS + LF H K+ + +
Sbjct: 14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLIS-ETLFALKHALILETSKATTSTKSPYG 72
Query: 63 LQVGEGCYHDEDEDHCLVPCPVRRLVEDPSSLIDE-DGCCNLKGKYWLIDSCNGLVCFRY 121
+ + YH L C + L + + E DG + Y ++ +C+GLVCF
Sbjct: 73 V-ITTSRYH-------LKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHV 124
Query: 122 TWGYTWGYDYLQGRCRFRFWNPATRLWSKKSPTLIMDR-----MLFGFGYDDSSDTYKVV 176
+ + WNP +L + S + + + +GFGYD+S D YKVV
Sbjct: 125 DYDKS-----------LYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVV 173
Query: 177 GIAISL-RGHWETAVYCMGDSCLREISSKPSLGLSPMGHTGIGLFAGGCLNWLAVEELKR 235
+ + ET +Y R +S PS G+ + G++ G LNW A
Sbjct: 174 ALLQQRHQVKIETKIYSTRQKLWRSNTSFPS-GVVVADKSRSGIYINGTLNWAATSSSSS 232
Query: 236 PKQNLQRLPLVILSFDMHKETYRSF--SLHEDISVVNTHLSVLGNCLCLFQDRKGTHFDV 293
S+DM ++ ++ + L L CL + KG + DV
Sbjct: 233 WTII---------SYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADV 283
Query: 294 WQMREYGVRESWTRLVSVSYEHLEADNCSMLRSWPLIFLGEDGDILMLIRNKNLDVMLCN 353
W M+E+G SW++L+S+ L + DG +++L L L N
Sbjct: 284 WVMKEFGEVYSWSKLLSI----------PGLTDFVRPLWISDGLVVLLEFRSGL--ALYN 331
Query: 354 LSDNSVKYVQRPANKHWRWAHGYVESLVSP 383
S+ Y + R A Y++++VSP
Sbjct: 332 CSNGRFHYPVSNSISGCRDAKVYLKTMVSP 361
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 144/368 (39%), Gaps = 63/368 (17%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGE 67
+P +I +I LP KTL++ + + K LI ND F ++HLH+ + L L G
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLI-NDPDFIESHLHRVLQTGDHLMILLRGA 62
Query: 68 GCYHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTWGYTW 127
+ D D S+ D + G + S NGL+
Sbjct: 63 LRLYSVDLDSL-------------DSVSDVEHPMKRGGPTEVFGSSNGLIGLS------- 102
Query: 128 GYDYLQGRCRFRFWNPATRLWSKKSPTLI--------MDRMLFGFGYDDSSDTYKVVGIA 179
+NP+TR + P+ I + +G GYD SD YKVV +
Sbjct: 103 -----NSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMV 157
Query: 180 ---------ISLRGHWETAVYCMGDSCLREISSKPS-------LGLSPMGHTGIGLFAGG 223
+ +E V+ + + + I S S + G G+ AG
Sbjct: 158 QFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGN 217
Query: 224 CLNWLAVEELKRPKQNLQRLPLVILSFDMHKETYRSFSLHEDISVVNTHLS----VLGNC 279
L+W+ NL I+ FD+ E + E ++ N + VL C
Sbjct: 218 SLHWVLPRRPGLIAFNL------IVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGC 271
Query: 280 LCLFQDRKGTHFDVWQMREYGVRESWTRLVSVSYEHLEADNCSMLRSWPLIFLGEDGDIL 339
LCL + ++ DVW M+EY VR+SWT++ +V + S +R PL++ + +L
Sbjct: 272 LCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPK-SVKSFSYMR--PLVYSKDKKKVL 328
Query: 340 MLIRNKNL 347
+ + N L
Sbjct: 329 LELNNTKL 336
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 144/368 (39%), Gaps = 63/368 (17%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGE 67
+P +I +I LP KTL++ + + K LI ND F ++HLH+ + L L G
Sbjct: 4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLI-NDPDFIESHLHRVLQTGDHLMILLRGA 62
Query: 68 GCYHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTWGYTW 127
+ D D S+ D + G + S NGL+
Sbjct: 63 LRLYSVDLDSL-------------DSVSDVEHPMKRGGPTEVFGSSNGLIGLS------- 102
Query: 128 GYDYLQGRCRFRFWNPATRLWSKKSPTLI--------MDRMLFGFGYDDSSDTYKVVGIA 179
+NP+TR + P+ I + +G GYD SD YKVV +
Sbjct: 103 -----NSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMV 157
Query: 180 ---------ISLRGHWETAVYCMGDSCLREISSKPS-------LGLSPMGHTGIGLFAGG 223
+ +E V+ + + + I S S + G G+ AG
Sbjct: 158 QFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGN 217
Query: 224 CLNWLAVEELKRPKQNLQRLPLVILSFDMHKETYRSFSLHEDISVVNTHLS----VLGNC 279
L+W+ NL I+ FD+ E + E ++ N + VL C
Sbjct: 218 SLHWVLPRRPGLIAFNL------IVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGC 271
Query: 280 LCLFQDRKGTHFDVWQMREYGVRESWTRLVSVSYEHLEADNCSMLRSWPLIFLGEDGDIL 339
LCL + ++ DVW M+EY VR+SWT++ +V + S +R PL++ + +L
Sbjct: 272 LCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPK-SVKSFSYMR--PLVYSKDKKKVL 328
Query: 340 MLIRNKNL 347
+ + N L
Sbjct: 329 LELNNTKL 336
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 111/419 (26%), Positives = 178/419 (42%), Gaps = 77/419 (18%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARN----------- 56
LP EI EIL LP K++ +F+CV K + +L S+D F K HL RN
Sbjct: 36 LPPEIITEILLRLPAKSIGRFRCVSKLFCTL-SSDPGFAKIHLDLILRNESVRSLHRKLI 94
Query: 57 --NHCLFTLQ---VGEGCY--------HDEDEDHCLVPCPVRRLVEDPSSLIDEDGC-CN 102
+H L++L +G+G + +D + +R V D L D+
Sbjct: 95 VSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGD--HLYDDRRVMLK 152
Query: 103 LKGKYW------LIDSCNGLVCFRYTWGYTWGYDYLQGRCRFRFWNPATRLWSKKSPTLI 156
L K + ++ S NGLVC G + Y+ G + N + KS
Sbjct: 153 LNAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPEN-----FRPKSVEYE 207
Query: 157 MDRM-LFGFGYDDSSDTYKVVGIAISLRGHWETAVYCMGDSCLREISSKPSLGLSPM-GH 214
D +GFG+D +D YK+V + + + +VY + R I + L G
Sbjct: 208 RDNFQTYGFGFDGLTDDYKLVKLVATSEDILDASVYSLKADSWRRICN---LNYEHNDGS 264
Query: 215 TGIGLFAGGCLNWLAVEELKRPKQNLQRLPLVILSFDMHKETYRSFSL---HEDIS--VV 269
G+ G ++W+ E ++ QR V+++FD+ E +R + ED S
Sbjct: 265 YTSGVHFNGAIHWVFTE-----SRHNQR---VVVAFDIQTEEFREMPVPDEAEDCSHRFS 316
Query: 270 NTHLSVLGNCLCLFQDRKGTHFDVWQMREYGVRESWTRL-VSVSYEHLEADNCSMLRSWP 328
N + L LC+ H D+W M EYG +SW+R+ +++ Y ++ CS ++
Sbjct: 317 NFVVGSLNGRLCVVNSCYDVHDDIWVMSEYGEAKSWSRIRINLLYRSMKP-LCST-KNDE 374
Query: 329 LIFLGEDGDILM----LIRNKNLDVMLCNLSDNSVKYVQRPANKHWRWAHGYVESLVSP 383
+ L DGD+++ + NL + LSD A+ YVESL+SP
Sbjct: 375 EVLLELDGDLVLYNFETNASSNLGICGVKLSDGF-------------EANTYVESLISP 420
>AT3G10430.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:3242750-3243862
REVERSE LENGTH=370
Length = 370
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 148/351 (42%), Gaps = 64/351 (18%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGE 67
LP+++ +EIL P ++L++FK CK W LISNDK F HL KS + L++
Sbjct: 5 LPFDLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHLDKSTKR-----FLRI-- 57
Query: 68 GCYHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTWGYTW 127
E+ + + PV ++ S++ +E L+ KY+ + C+GL+
Sbjct: 58 -----ENRERVQILDPVTEILA-VSTIPNE-----LRHKYFTLIHCDGLML-------GM 99
Query: 128 GYDYLQGRCRFRFWNPATR--LWSKKSPTLIM--DRMLFGFGYDDS-SDTYKV-----VG 177
Y+ L WNP R W K SP L+ GFGYD + D YK+ +G
Sbjct: 100 CYEELGSDPNLAVWNPVMRKIKWIKPSPPLVCYWGSDYLGFGYDKTFRDNYKILRFTYLG 159
Query: 178 IAISLRGHWETAVYCMGDSCLREISSKPSLGLSPMGHTGI---GLFAGGCLNWLAVEELK 234
+ + +Y R I +K G + G+ G + W+ ++E
Sbjct: 160 DDDDDESYPKCQIYEFNSGSWRSIEAKFD------GEIDVEVDGVSVNGSMYWIELQE-- 211
Query: 235 RPKQNLQRLPLVILSFDMHKETYRSF---SLHEDISVVNTHLSVLGNCLCLFQDRKGT-- 289
K+N ILSFD KET+ L+ DI + G+ L L Q + T
Sbjct: 212 --KKNF------ILSFDFSKETFNRICDSPLYWDIKRLGC---FNGDRLSLLQQNEATRE 260
Query: 290 -HFDVWQMREYGVRESWTRLVSVSYEHLEADNCSMLRSWPLIFLGEDGDIL 339
H V V S++R SV+ + + P F+G++ +I+
Sbjct: 261 IHVSVTNKLSDEVV-SFSRYFSVTLPDIPLFRSIDILPLPGCFIGKNRNII 310
>AT1G70960.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:26756253-26757362
FORWARD LENGTH=369
Length = 369
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 118/281 (41%), Gaps = 57/281 (20%)
Query: 5 IEFLPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQ 64
E LP +Q+EILS +P+K LM+F CV K W S+I ++ F++++L +S + LF +
Sbjct: 6 FETLPRHMQMEILSRVPLKFLMKFMCVSKKWASIIRGEE-FREDYLFQSMKRPRVLFVID 64
Query: 65 -------VGEGCYHD-EDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGL 116
E +H ED L+ +R+ + L+ + GL
Sbjct: 65 HREYLPIKPEAFFHSVYQEDQPLLLSGKQRMRTFETPLVQ------------VFQPIRGL 112
Query: 117 VCFRYTWGYTWGYDYLQGRCRFRFWNPATRLWSKKSPTLIMDR---MLFGFGYDDSSDTY 173
+C QG + NP + + + P + + + M FGYD+ D +
Sbjct: 113 IC-------------QQGYGKIVICNPGLKKF-RSLPQIKVHKGAPMRTFFGYDEDKDVF 158
Query: 174 KVVGIAISLRGHW-----ETAVYCMGDSCLREISSKPSLGLSPMGHTGI--GLFAGGCLN 226
KV+ I G E VY MG E SS L H + GLF GG L
Sbjct: 159 KVLCITWLRNGKRSEVSKEYLVYTMGSD---EESSSWRLITCEHDHAPVTEGLFKGGVLY 215
Query: 227 WLAVEELKRPKQNLQRLPLVILSFDMHKETYRSFSLHEDIS 267
+ A K N + V++SF+++ E + L +IS
Sbjct: 216 YGA-------KSNNGK--SVVMSFNVNSEDFSVIELEVEIS 247
>AT2G17310.1 | Symbols: SON1 | F-box and associated interaction
domains-containing protein | chr2:7531212-7532324
FORWARD LENGTH=370
Length = 370
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 107/272 (39%), Gaps = 55/272 (20%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGE 67
LPWE++ +ILS LP +L++F+ V K W SL NDK F NHL +S F +
Sbjct: 3 LPWELEEDILSRLPPISLVRFRTVSKHWNSLF-NDKTFINNHLSRSRPE----FIILTNS 57
Query: 68 GCYHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTWGYTW 127
Y + DH + P RL E P+ I G +I++C+ + + Y
Sbjct: 58 KIYSVDIIDHNNID-PTIRLHEIPTYDIHSRGT---DLNRTIINTCDEFLFYNY------ 107
Query: 128 GYDYLQGRCRFRFWNPATRLWSKKSPTLIMDRML---------FGFGYDDS--SDTYKVV 176
R+W+ T LW +P L R + FG GYD+S YK++
Sbjct: 108 -----------RYWDNMTALW---NPWLRQVRWIEYANQEFCVFGLGYDNSRPEKVYKIL 153
Query: 177 GIAI----SLRGHWETAVYCMGDSCLREISSKPSLGLSPMGHTG--IGLFAGGCLNWLAV 230
G LR C DS LR I +P P+ T + G L W
Sbjct: 154 GHLFCHGKVLRDQKVVIYECASDS-LRFI-DRPEDDDWPITETAKRSNVSLNGNLYWFGC 211
Query: 231 EELKRPKQNLQRLPLVILSFDMHKETYRSFSL 262
N + I FD E ++ F L
Sbjct: 212 -------SNYENDEYYIRIFDFSTEDFKPFCL 236
>AT3G17710.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:6055597-6056703
FORWARD LENGTH=368
Length = 368
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 111/268 (41%), Gaps = 52/268 (19%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGE 67
LPW+++ EILS LP ++L++F+ VCK W L S DK F K HL R L +
Sbjct: 6 LPWDLEEEILSRLPPRSLVRFRTVCKHWNGLFS-DKRFVKKHL---VRARPQFIFLTESK 61
Query: 68 GCYHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTWGYTW 127
Y E + + VR + D C +K + I +C+GL+ FR W
Sbjct: 62 KMYSIEIDLGGTI--EVREVPYD-------FHCQPMKKNFTTIMACDGLL-FRDFWK--- 108
Query: 128 GYDYLQGRCRFRFWNPATRLWSKKSPTLIMDRMLF---GFGYDD--SSDTYKVVG----- 177
QG WNP W ++ + + F G GYD YK++G
Sbjct: 109 -----QG---VAVWNP----WLRQVGWIEYEDKGFRFCGVGYDSCKPDKCYKILGYFNCT 156
Query: 178 --IAISLR-GHWETAVYCMGDSCLREISSKPSLGLSPMGHTGIGLFAGGCLNWLAVEELK 234
++ SL+ G+++ A+Y + I + L P L G L WLA
Sbjct: 157 RRLSDSLQEGYYQAAIYECASQAFKFIDTPNPFNLWPNKDP---LSVNGNLYWLA----- 208
Query: 235 RPKQNLQRLPLVILSFDMHKETYRSFSL 262
+ + L I +FD E ++ F L
Sbjct: 209 --HNHPETLEYFIETFDFSMEIFKPFCL 234
>AT3G16210.1 | Symbols: | F-box family protein |
chr3:5494533-5495615 REVERSE LENGTH=360
Length = 360
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 30/173 (17%)
Query: 6 EFLPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQV 65
+FLP E+ +EIL L +K L +F+CVCK+W+ LI ND F + + S F
Sbjct: 3 KFLPEELAIEILVRLSMKDLARFRCVCKTWRDLI-NDPGFTETYRDMSPAK----FVSFY 57
Query: 66 GEGCYH-DEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTWG 124
+ Y D + H ++ + ++ S+IDE C + C+G +C
Sbjct: 58 DKNFYMLDVEGKHPVITNKLDFPLD--QSMIDESTC---------VLHCDGTLCVT---- 102
Query: 125 YTWGYDYLQGRCRFRFWNPATRLWS-KKSPTLIMDRMLFGFGYDDSSDTYKVV 176
L+ WNP ++ + +P + D + GFGYD D YKVV
Sbjct: 103 -------LKNHT-LMVWNPFSKQFKIVPNPGIYQDSNILGFGYDPVHDDYKVV 147
>AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box
associated interaction domain (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT1G71320.1); Has 422 Blast hits to 419
proteins in 26 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). |
chr3:23083609-23084852 REVERSE LENGTH=325
Length = 325
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 35/230 (15%)
Query: 113 CNGLVCFRYTWGYTWGYDYLQGRCRFRFWNPATRLWSKKSPTLIMDR-----------ML 161
CNG+VC Y GY YL NPATR SP + + +
Sbjct: 78 CNGIVCI-----YDLGYIYL--------INPATRKLRILSPEFLREYTGRTGWSNDLPIN 124
Query: 162 FGFGYDDSSDTYKVVGIAISLRGHWETAVYCMGDSCLREISSKPSLGLSPMGHTGIGLFA 221
GFG D + TYKV+ + + R +T + + R + S G +G+ +FA
Sbjct: 125 VGFGRDMVTGTYKVILMYLFDRNFVKTEALNLKNGERRYVYFPISYG--QLGNDKRSIFA 182
Query: 222 GGCLNWLAVEELKRPKQNLQRLPLVILSFDMHKETYRSFSLHEDISVV--NTHLSVLGNC 279
G L WL ++ L +L + D+H ET+R L + + +L L +
Sbjct: 183 NGSLYWLPKPDVDFYTNQLIKLAAI----DLHTETFRYVPLPSWYTKYCKSVYLWSLKDS 238
Query: 280 LCLFQDRKGTHFDVWQMREYGVRESWTRLVSVSYEHLEADNCSMLRSWPL 329
LC+ + DVW +++ W ++ SV ++ + NC W L
Sbjct: 239 LCVSDVLQNPSVDVWSLQQEEPSVKWEKMFSV---NILSTNCLDANFWKL 285
>AT3G51171.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:19010856-19011626
FORWARD LENGTH=256
Length = 256
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 110/269 (40%), Gaps = 48/269 (17%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGE 67
LPWE++ +ILS L ++L++F+ VCK W L ++K F KNH ++ F
Sbjct: 4 LPWELEEDILSRLAAQSLVRFRSVCKRWNYLF-DEKSFIKNHFARACPQ----FIFMTDS 58
Query: 68 GCYHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTWGYTW 127
Y E V ++ V D S + D K Y I +C+G + F +W
Sbjct: 59 NIYSIEIIGLDGVDPTIKLRVLDSSGIPYRD----WKFAYITITACDGFL-FCNSWASPK 113
Query: 128 GYDYLQGRCRFRFWNPATRLWSKKSPTLIMDRMLF---GFGYDDSSD--TYKVVGIAI-- 180
G FWNP W K+ + + F G GYD++ D YK++G +
Sbjct: 114 GT---------AFWNP----WLKQVKWIEYEDKGFNVCGLGYDNTRDGKVYKILGYLMCR 160
Query: 181 -----SLRGHWETAVYCMGDSCLR--EISSKPSLGLSPMGHTGIGLFAGGCLNWLAVEEL 233
S H A+Y + EIS+K L+ + + L G L WL+
Sbjct: 161 PEDGSSYVYHQRVAIYDCASHAFKFIEISNKDWF-LTDVTRFSVSL--NGNLYWLS---- 213
Query: 234 KRPKQNLQRLPLVILSFDMHKETYRSFSL 262
P N +I FD +E + F L
Sbjct: 214 --PIPNTDD--FLIQCFDFSREICKPFCL 238
>AT4G21240.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:11322411-11323664
FORWARD LENGTH=417
Length = 417
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 123/318 (38%), Gaps = 54/318 (16%)
Query: 5 IEFLPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKS----------A 54
E +P ++ +IL LP K+ ++F+ V K W S+ + + S A
Sbjct: 33 FELIPLDMIPDILLRLPAKSAVRFRIVSKLWLSITTRPYFIRSFAFPSSTRLCLMACVKA 92
Query: 55 RNNHCLFTL-QVGEGCYHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSC 113
R+ +L Q +G Y D C + P + +PSS +S
Sbjct: 93 RDMRLFISLHQHDDGSY--AHVDRCEIKSP-KHDYYNPSS-----------------ESV 132
Query: 114 NGLVCFRYTWGYTWGYDYLQGRCRFRFWNPATR----LWSKKSPTLIMDRMLFGFGYDDS 169
NGLVCF + WNP+ R L K + + + GYD
Sbjct: 133 NGLVCFGDFYNIV-------------VWNPSMRQHVTLPEPKPHSTVRYFIRSCLGYDPV 179
Query: 170 SDTYKVVGIAISLRGHWETAVYCMG-DSCLREISSKPSLGLSPMGHTGIGLFAGGCLNWL 228
D YKV+ I+ G+ + V+ +G R I + P P G + +G G + +
Sbjct: 180 EDKYKVLSISGYHNGNHDPLVFTLGPQESWRVIQNSPLDIPLPTGGSRVGTCINGHVYYE 239
Query: 229 AVEELKRPKQNLQRLPLVILSFDMHKETYRSFSLHEDISVVNTHLSVLGNCLCLFQDRKG 288
A +++ ++ +++SFD+ E + + D ++ N L+ G D
Sbjct: 240 A--QIRFKVDDIFNFENILMSFDVRYEKFNTIKKPADPTLRNFMLNYQGKLAWFCSDYSS 297
Query: 289 THFDVWQMREYGVRESWT 306
F W + + G ++ W+
Sbjct: 298 IRF--WVLDD-GDKQEWS 312
>AT4G19940.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:10806195-10807430
FORWARD LENGTH=411
Length = 411
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 109/286 (38%), Gaps = 58/286 (20%)
Query: 5 IEFLPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQ 64
I +P+++ +EIL+ LP K+LM+FK V K W SLI + N L K +
Sbjct: 32 IPEIPFDLVIEILTRLPAKSLMRFKSVSKLWSSLICSRNF--TNRLLKLSSPPRLFM--- 86
Query: 65 VGEGCYHDEDEDHCL-----VPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCF 119
C D H + P + SS+ID+D Y + GL+C
Sbjct: 87 ----CLSSSDNSHLKTVLLSLSSPPDSDITMSSSVIDQDLTMPGMKGYQISHVFRGLMC- 141
Query: 120 RYTWGYTWGYDYLQGRCRFRFWNPATR----LWSKKSPTLIMD-----RMLFGFGYDDSS 170
L + + +N TR L + T++ + ++++ G+D
Sbjct: 142 ------------LVKKSSAQIYNTTTRQLVVLPDIEESTILAEEHKSKKIMYHIGHDPVY 189
Query: 171 DTYKVVGIA----------ISLRGHWETAVYCMGDSCLREISSKPSLGLSPMGHTGIGLF 220
D YKVV I L HW + G R+IS K P G GL
Sbjct: 190 DQYKVVCIVSRASDEVEEYTFLSEHWVLLLEGEGSRRWRKISCK----YPPHVPLGQGLT 245
Query: 221 AGGCLNWLAVEELKRPKQNLQRLPLVILSFDMHKETYRSFSLHEDI 266
G +++LA + + V++ FD H E + + DI
Sbjct: 246 LSGRMHYLAWVRVSDNR--------VLVIFDTHSEEFSMLQVPGDI 283
>AT2G02030.1 | Symbols: | F-box family protein | chr2:482335-483829
FORWARD LENGTH=334
Length = 334
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 45/197 (22%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGE 67
+P EI EIL LPVK+L +F+ V K W++LI++ K F K H+ L+ +
Sbjct: 39 IPNEIVEEILVRLPVKSLTRFQTVSKHWRTLITS-KYFGKRHM-----------ALEKSK 86
Query: 68 GC--------YHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCC----NLKGKYWLIDSCNG 115
GC + D ED ++ + + +S+ + D KG + +SC+G
Sbjct: 87 GCKLLFVCDDFVDRAEDTLF----LKTVALEKTSVSEGDEQAFEFEGYKGFLDISESCDG 142
Query: 116 LVCF------------RYTWGYTWGYDYLQGRCRFRFWNPATRLWSKKSPTLIMDRML-- 161
LVCF T +Q C ++ NP L + P ++D ++
Sbjct: 143 LVCFYDTTRAVEVMNPATTMFIELPLSRIQQLCIYK-PNPEVELEPVQDPNPVLDPVMTC 201
Query: 162 --FGFGYDDSSDTYKVV 176
G G D S +YK+V
Sbjct: 202 SQIGVGKDSVSGSYKLV 218
>AT3G52320.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:19403020-19404192
REVERSE LENGTH=390
Length = 390
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 107/262 (40%), Gaps = 46/262 (17%)
Query: 8 LPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQVGE 67
+P E+ ++IL LP K+LM+FKCV K W SLI++ + F S+ + CLF V
Sbjct: 27 IPEEMLIDILIRLPAKSLMRFKCVSKLWLSLITS-RYFTNRFFKPSSPS--CLFAYLVDR 83
Query: 68 GCYHDEDEDHCLV----PCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRYTW 123
E++ L+ + S+ID+ + G Y L+++ GL+C+R
Sbjct: 84 -----ENQSKYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGY-LVNAARGLLCYR--- 134
Query: 124 GYTWGYDYLQGRCRFRFWNPATRLWSKKSPTLIMDRMLFGFGYDDSSDTYKVVGI----- 178
GR R + NP+TR + + FG+D D YKV+ +
Sbjct: 135 ---------TGR-RVKVCNPSTRQIVELPIMRSKTNVWNWFGHDPFHDEYKVLSLFWEVT 184
Query: 179 --AISLRGHWETAVYCMGDSCLREIS-SKPSLGLSPMGHTGIGLFAGGCLNWLAVEELKR 235
+R + V +G S S P P G+ G L + A + R
Sbjct: 185 KEQTVVRSEHQVLVLGVGASWRNTKSHHTPHRPFHPYSR---GMTIDGVLYYSARTDANR 241
Query: 236 PKQNLQRLPLVILSFDMHKETY 257
V++SFD+ E +
Sbjct: 242 ---------CVLMSFDLSSEEF 254
>AT5G10340.1 | Symbols: | F-box family protein |
chr5:3253122-3255045 FORWARD LENGTH=445
Length = 445
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 156/389 (40%), Gaps = 73/389 (18%)
Query: 6 EFLPWE-IQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKK---NHLHKSARNNHCLF 61
E LP + I+ I+ L VKTL++FK V K W S I + ++ +HL +S+ + H L
Sbjct: 67 ELLPHDVIEYHIMVRLDVKTLLKFKSVSKQWMSTIQSPSFQERQLIHHLSQSSGDPHVLL 126
Query: 62 TLQVGEGCYHDEDEDHCLVPCPVRRLVEDPSSLIDEDGCCNLKGKYWLIDSCNGLVCFRY 121
+ + + C +D LVE ++ + K + SC+GL+C
Sbjct: 127 -VSLYDPCARQQDPSISSFEALRTFLVESSAASVQIPTPWEDKLYFVCNTSCDGLICL-- 183
Query: 122 TWGYTWGYDYLQGRCRFRFW-------NPATRLWSKKSPT-----LIMDR---------- 159
F F+ NP TR W + P + D+
Sbjct: 184 ----------------FSFYELPSIVVNPTTR-WHRTFPKCNYQLVAADKGERHECFKVA 226
Query: 160 -MLFGFGYDDSSDTYKVV----GIAISLRGHWET-AVYCMGDSCLREI-SSKPSLGLSPM 212
GFG D S TYK V + L T V+ + R + + P L L
Sbjct: 227 CPTPGFGKDKISGTYKPVWLYNSAELDLNDKPTTCEVFDFATNAWRYVFPASPHLIL--- 283
Query: 213 GHTGIGLFAGGCLNWLAVEELKRPKQNLQRLPLVILSFDMHKETYRSFSLHEDISVVNTH 272
HT ++ G L+W L + + +LS D+H ET++ S ++V + +
Sbjct: 284 -HTQDPVYVDGSLHWFTA--LSHEGETM------VLSLDLHSETFQVISKAPFLNVSDEY 334
Query: 273 LSV---LGNCLCLFQDRKGTHFDVWQMREYGVRESWTRLVSVSYEHLEADNCSMLRSW-P 328
V LG+ LC+ ++K + +W + + ++W ++ S+ + S + ++ P
Sbjct: 335 YIVMCNLGDRLCV-SEQKWPNQVIWSLDDSD-HKTWKQIYSIDLIITSSLFFSAIFAFTP 392
Query: 329 LIFLGEDGDILMLIRNKNLDVMLCNLSDN 357
L L D D L+ + + D L + D
Sbjct: 393 LAVL--DKDKLLFYDSTHGDAFLTHDPDT 419
>AT1G30790.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:10932713-10933912
FORWARD LENGTH=399
Length = 399
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 5 IEFLPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQ 64
I+ +P+++ VEIL+ LP K+LM+FKCV K W S+I N + S R F +
Sbjct: 6 IDHIPFDLTVEILTRLPAKSLMKFKCVSKLWSSIIHNQSFIDSFYSISSTRPR---FIVA 62
Query: 65 VGEGCYHDEDEDHCLV 80
G + + E +
Sbjct: 63 FSNGSFPSDKEKRLFI 78
>AT5G44220.1 | Symbols: | F-box family protein |
chr5:17810477-17811364 FORWARD LENGTH=295
Length = 295
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%)
Query: 6 EFLPWEIQVEILSWLPVKTLMQFKCVCKSWKSLISNDKLFKKNHLHKSARNNHCLFTLQV 65
+ LP ++ EIL LP KTL +F CV K W S+I + L K SAR FT +
Sbjct: 60 DLLPMDLIKEILKRLPAKTLARFLCVSKLWSSIIRSRDLMKLFLTESSARPGRLFFTFRR 119
Query: 66 GEGCYHDEDEDHCLV 80
+ C+ E+ +
Sbjct: 120 KDDCFLFSSEESSVA 134