Miyakogusa Predicted Gene

Lj4g3v1512520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1512520.1 tr|Q8LQ55|Q8LQ55_ORYSJ Integral membrane
protein-like OS=Oryza sativa subsp. japonica
GN=P0039G05.12,38.6,2e-19,seg,NULL; DUF588,Uncharacterised protein
family UPF0497, trans-membrane plant,CUFF.49327.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36330.1 | Symbols:  | Uncharacterised protein family (UPF049...   186   6e-48
AT5G62820.1 | Symbols:  | Uncharacterised protein family (UPF049...   162   1e-40
AT5G40300.1 | Symbols:  | Uncharacterised protein family (UPF049...   126   9e-30
AT2G38480.1 | Symbols:  | Uncharacterised protein family (UPF049...    55   2e-08

>AT2G36330.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr2:15233620-15235298 FORWARD LENGTH=283
          Length = 283

 Score =  186 bits (473), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 103/152 (67%)

Query: 29  SKREVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFA 88
           S+RE + +  ALGFRLSEVVL LISFS+MAADKT+GWSGDSFDRYKEYR+CLSVNV+AF 
Sbjct: 126 SRREEVVKFSALGFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFV 185

Query: 89  YAAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGK 148
           Y++FQACDL Y L   + LI+          +DQVLAYLL+        RVDDW SNWGK
Sbjct: 186 YSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGK 245

Query: 149 DEFTEMASXXXXXXXXXXXXXXXXXXISGYNL 180
           DEFTEMAS                  ISGYNL
Sbjct: 246 DEFTEMASASIAMSFLAFLAFAFSSLISGYNL 277


>AT5G62820.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr5:25223828-25224898 REVERSE LENGTH=297
          Length = 297

 Score =  162 bits (410), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 94/145 (64%)

Query: 38  VALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFAYAAFQACDL 97
            ALGFR++EV+LC+ISFS+MAADKTQGWSGDS+DRYKEYRYCL+VNVIAF Y+AF+ACD 
Sbjct: 149 TALGFRITEVILCVISFSIMAADKTQGWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDA 208

Query: 98  GYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGKDEFTEMASX 157
              +     +IN          MDQ+LAYLL+        RVDDW SNWGKDEFT+MA+ 
Sbjct: 209 ACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCAATRVDDWVSNWGKDEFTQMATA 268

Query: 158 XXXXXXXXXXXXXXXXXISGYNLCT 182
                            IS Y L T
Sbjct: 269 SIAVSFLAFGAFAVSALISSYRLFT 293


>AT5G40300.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr5:16110778-16112701 FORWARD LENGTH=270
          Length = 270

 Score =  126 bits (316), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 82/155 (52%)

Query: 29  SKREVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFA 88
           SK   + RK  LGFR+   V CL+SFSVM +D+ +GW+ DSF  YKE+R+CL+ NVI F 
Sbjct: 113 SKWASLIRKALLGFRVIAFVSCLVSFSVMVSDRDKGWAHDSFYNYKEFRFCLAANVIGFV 172

Query: 89  YAAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGK 148
           Y+ F  CDL Y L    +             +DQ+LAYLL         RVDDWQSNWG 
Sbjct: 173 YSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSASIRVDDWQSNWGA 232

Query: 149 DEFTEMASXXXXXXXXXXXXXXXXXXISGYNLCTI 183
           D+F ++A                    SGY LC +
Sbjct: 233 DKFPDLARASVALSYVSFVAFAFCSLASGYALCAL 267


>AT2G38480.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr2:16110960-16111694 REVERSE LENGTH=188
          Length = 188

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 30  KREVMARKVALGFRLSEVVLCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNVIAFAY 89
           KRE + +K +   R   ++  LI+F +M ++K  G+ G +F+ Y+EYRY L++++I+  Y
Sbjct: 39  KREDLIKKASPITRGICLLFSLIAFLIMVSNK-HGY-GRNFNDYEEYRYVLAISIISTLY 96

Query: 90  AAFQACDLGYQLFAGRQLINXXXXXXXXXXMDQVLAYLLIXXXXXXXXRVDDWQSNWGKD 149
            A+Q     +  F+ R++ +           DQ++AYLLI          + ++   G+D
Sbjct: 97  TAWQT----FAHFSKREIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFRE--GQD 150

Query: 150 E-FTEMASXXXXXXXXXXXXXXXXXXISGYNLCT 182
             FT+ A+                   SGY L T
Sbjct: 151 NIFTDSAASAISMAIFAFIALALSALFSGYKLST 184