Miyakogusa Predicted Gene

Lj4g3v1479300.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1479300.1 tr|B9GZJ6|B9GZJ6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_554061 PE=4
SV=1,44.12,0.000000002,FAMILY NOT NAMED,NULL;
PARP_CATALYTIC,Poly(ADP-ribose) polymerase, catalytic domain; RST,RST
domain ,CUFF.49312.1
         (348 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62520.1 | Symbols: SRO5 | similar to RCD one 5 | chr5:250980...   188   4e-48
AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 | chr1:835091...   180   1e-45
AT3G47720.1 | Symbols: SRO4 | similar to RCD one 4 | chr3:175927...   166   3e-41
AT1G32230.3 | Symbols: AtRCD1 | WWE protein-protein interaction ...   158   6e-39
AT1G32230.2 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prote...   157   8e-39
AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prote...   157   1e-38
AT1G70440.1 | Symbols: SRO3 | similar to RCD one 3 | chr1:265493...   152   3e-37
AT2G35510.1 | Symbols: SRO1 | similar to RCD one 1 | chr2:149168...   134   1e-31
AT5G62520.2 | Symbols: SRO5 | similar to RCD one 5 | chr5:250980...   129   4e-30

>AT5G62520.1 | Symbols: SRO5 | similar to RCD one 5 |
           chr5:25098071-25099264 FORWARD LENGTH=309
          Length = 309

 Score =  188 bits (478), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/255 (41%), Positives = 156/255 (61%), Gaps = 19/255 (7%)

Query: 61  LASRIQVVSIRRNKFPTVISQARVDSFQIFARATAQLRHGN---ANVKHAWYSVSGMEEI 117
           L  + Q++S+ RN F  V S+A++ +FQ+F  A  Q++HG    A VK+ W SVS   E+
Sbjct: 63  LGDQCQILSVLRNGFRNVGSRAKLKTFQVFQEAV-QMKHGGDGGAKVKYGWCSVS-KHEL 120

Query: 118 LEILQHGFGH------DHHRGLRLSPEDSPHLSVRRSVAD-KDGLRHLVLCRVILGRMEV 170
             I ++GF           RGL LSP++SP   ++ S ++ +DG+R L+LCRV+LG+ E+
Sbjct: 121 KTIFEYGFSEPLRNDGSFGRGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEI 180

Query: 171 VSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNTHVLPEYVLSFRIPPTGRAVNVAA 230
           V  GS +    S E+DSGVDD+ S K+Y + S  MNTHVLPE+++  + P          
Sbjct: 181 VPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWSTHMNTHVLPEFLVCIKAP-------FNL 233

Query: 231 AREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYREMKISRQQMIQKLRVIAGD 290
            R P R +SPW+ FP LI ALSK LP   + ++ K  KD +  +I+R ++IQ++R I GD
Sbjct: 234 TRSPKRLRSPWMAFPVLIKALSKFLPPSQILVIQKHYKDQQNRRITRSELIQRVRSITGD 293

Query: 291 KLLFQVIKSFREKLQ 305
           KLL  +IK+   K+Q
Sbjct: 294 KLLVHIIKACGHKVQ 308


>AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 |
           chr1:8350912-8352232 FORWARD LENGTH=323
          Length = 323

 Score =  180 bits (456), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/262 (37%), Positives = 156/262 (59%), Gaps = 17/262 (6%)

Query: 54  FIDGLGPLASRIQVVSIRRNKFP-TVISQARVDSFQIFARATAQLRHGNANVKHAWYSVS 112
            + G+G ++S   +V+I +N     + ++A+  +F+IF  A A+   G+ANVK+ WY+ S
Sbjct: 62  LLSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVARKHGGDANVKYGWYAGS 121

Query: 113 GMEEILEILQHGF-----------GHDHHRGLRLSPEDSPHLSVRRSVADKDGLRHLVLC 161
             +EI  I+ +GF           G  H  G+ L P     L+   +  D++GLR+L+LC
Sbjct: 122 -RDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAASATEQDEEGLRYLLLC 180

Query: 162 RVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNTHVLPEYVLSFRIPP 221
           RVILG+ E++  GS Q    S E+DSGVDD+ +P+ Y I S  MN+ +LP Y++SFR P 
Sbjct: 181 RVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNMNSCILPSYIVSFRSP- 239

Query: 222 TGRAVNVAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYREMKISRQQMI 281
               + V+     SRP SPWV F +L+S LS  +    M ++++   D+R+ KI R Q++
Sbjct: 240 ---RLRVSRGGFASRPSSPWVSFASLMSMLSTSMDPSRMNLIIRTYDDFRKRKIRRDQLV 296

Query: 282 QKLRVIAGDKLLFQVIKSFREK 303
           +K+R +AGD LL ++IK+ + +
Sbjct: 297 RKMREVAGDNLLAEIIKNHKNR 318


>AT3G47720.1 | Symbols: SRO4 | similar to RCD one 4 |
           chr3:17592771-17593966 FORWARD LENGTH=316
          Length = 316

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 153/257 (59%), Gaps = 24/257 (9%)

Query: 61  LASRIQVVSIRRNKFPTVISQARVDSFQIFARATAQLR---HGN----ANVKHAWYSVSG 113
           L+++ ++VSI +N F T + QA++ +FQI+A + A+      GN    A      Y   G
Sbjct: 71  LSNQFEIVSILKNGFQTPLGQAKLKAFQIYAESVAKKSGSCCGNKAAVAEAARVKYGCCG 130

Query: 114 ME--EILEILQHGFGHDHHRGLRLSPEDSPHLSVR--RSVADKDGLRHLVLCRVILGRME 169
           +E  E+  IL +GF ++    L LSP+++P   +    S  ++DG+  L+  R+I+G+ E
Sbjct: 131 VEKEELKAILMYGFSNN---ALCLSPDNAPLQCMIDPSSSCNEDGISFLLFSRIIMGKSE 187

Query: 170 VVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNTHVLPEYVLSFRIPPTGRAVNVA 229
           VV   S Q    S E+DSGVD ++SP +Y I S  MNTHVLPE+V+  + P   +  N  
Sbjct: 188 VVCSTS-QSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEFVVCIKTPSILKRKN-- 244

Query: 230 AAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYREMKISRQQMIQKLRVIAG 289
                  PKSPW+ FP LI+++SK L Q  + ++ K  K++++ +ISR ++IQ+LR I G
Sbjct: 245 -------PKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELIQRLRSITG 297

Query: 290 DKLLFQVIKSFREKLQK 306
           D LL Q+IKS  +K+ K
Sbjct: 298 DSLLVQIIKSVGQKVHK 314


>AT1G32230.3 | Symbols: AtRCD1 | WWE protein-protein interaction
           domain protein family | chr1:11613427-11615748 FORWARD
           LENGTH=570
          Length = 570

 Score =  158 bits (399), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 173/332 (52%), Gaps = 61/332 (18%)

Query: 19  DDTDDSMASDCESGVSGGEVIVRADVRSLESVGRRFIDGLGPLASRIQVVSIRRNKFPTV 78
           D+TD  + S  +  ++G EV+ +  V+ + +VG          AS   V  +   +F + 
Sbjct: 255 DETDAIVVSGAK--LTGSEVLDKDAVKKMFAVG---------TASLGHVPVLDVGRFSSE 303

Query: 79  ISQARVDSFQIFARATAQLRHGNANVKHAWYSVSGMEEILE-ILQHGFGHD--------H 129
           I++AR+  FQ     T + R G+ANV++AW  +    E+L  ++  G G          +
Sbjct: 304 IAEARLALFQKQVEITKKHR-GDANVRYAW--LPAKREVLSAVMMQGLGVGGAFIRKSIY 360

Query: 130 HRGLRLSPEDSPHLSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGV 189
             G+ L+  D P+ S R    D++G+R++VLCRVI+G ME++     Q  S  +EYD+GV
Sbjct: 361 GVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNGV 420

Query: 190 DDVSSPKEYFIRSNRMNTHVLPEYVLSFR---------------------------IPP- 221
           DD+ SPK Y + +  MNTH+ PE+V+ F+                           +PP 
Sbjct: 421 DDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVTLEGPKDLPPQ 480

Query: 222 --------TGRAVNVAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYREM 273
                   +G A +V ++   +RPKSPW+PFP L +A+S  + ++DM ++    +  R+ 
Sbjct: 481 LESNGARGSGSANSVGSS--TTRPKSPWMPFPTLFAAISHKVAENDMLLINADYQQLRDK 538

Query: 274 KISRQQMIQKLRVIAGDKLLFQVIKSFREKLQ 305
           K++R + ++KLRVI GD LL   I + + +++
Sbjct: 539 KMTRAEFVRKLRVIVGDDLLRSTITTLQNQVR 570


>AT1G32230.2 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE
           protein-protein interaction domain protein family |
           chr1:11613427-11615894 FORWARD LENGTH=588
          Length = 588

 Score =  157 bits (398), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 173/337 (51%), Gaps = 65/337 (19%)

Query: 19  DDTDDSMASDCESGVSGGEVIVRADVRSLESVGRRFIDGLGPLASRIQVVSIRRNKFPTV 78
           D+TD  + S  +  ++G EV+ +  V+ + +VG          AS   V  +   +F + 
Sbjct: 255 DETDAIVVSGAK--LTGSEVLDKDAVKKMFAVG---------TASLGHVPVLDVGRFSSE 303

Query: 79  ISQARVDSFQIFARATAQLRHGNANVKHAWYSVSGMEEILE-ILQHGFGHD--------H 129
           I++AR+  FQ     T + R G+ANV++AW  +    E+L  ++  G G          +
Sbjct: 304 IAEARLALFQKQVEITKKHR-GDANVRYAW--LPAKREVLSAVMMQGLGVGGAFIRKSIY 360

Query: 130 HRGLRLSPEDSPHLSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGV 189
             G+ L+  D P+ S R    D++G+R++VLCRVI+G ME++     Q  S  +EYD+GV
Sbjct: 361 GVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNGV 420

Query: 190 DDVSSPKEYFIRSNRMNTHVLPEYVLSFR---------------------------IPP- 221
           DD+ SPK Y + +  MNTH+ PE+V+ F+                           +PP 
Sbjct: 421 DDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVTLEGPKDLPPQ 480

Query: 222 --------TGRAVNVAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYREM 273
                   +G A +V ++   +RPKSPW+PFP L +A+S  + ++DM ++    +  R+ 
Sbjct: 481 LESNGARGSGSANSVGSS--TTRPKSPWMPFPTLFAAISHKVAENDMLLINADYQQLRDK 538

Query: 274 KISRQQMIQKLRVIAGDKLLFQVIKSFREKLQKPPPS 310
           K++R + ++KLRVI GD LL   I +    LQ  P S
Sbjct: 539 KMTRAEFVRKLRVIVGDDLLRSTITT----LQNQPKS 571


>AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE
           protein-protein interaction domain protein family |
           chr1:11613427-11615894 FORWARD LENGTH=589
          Length = 589

 Score =  157 bits (397), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 173/338 (51%), Gaps = 66/338 (19%)

Query: 19  DDTDDSMASDCESGVSGGEVIVRADVRSLESVGRRFIDGLGPLASRIQVVSIRRNKFPTV 78
           D+TD  + S  +  ++G EV+ +  V+ + +VG          AS   V  +   +F + 
Sbjct: 255 DETDAIVVSGAK--LTGSEVLDKDAVKKMFAVG---------TASLGHVPVLDVGRFSSE 303

Query: 79  ISQARVDSFQIFARATAQLRHGNANVKHAWYSVSGMEEILE-ILQHGFGHD--------H 129
           I++AR+  FQ     T + R G+ANV++AW  +    E+L  ++  G G          +
Sbjct: 304 IAEARLALFQKQVEITKKHR-GDANVRYAW--LPAKREVLSAVMMQGLGVGGAFIRKSIY 360

Query: 130 HRGLRLSPEDSPHLSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGV 189
             G+ L+  D P+ S R    D++G+R++VLCRVI+G ME++     Q  S  +EYD+GV
Sbjct: 361 GVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNGV 420

Query: 190 DDVSSPKEYFIRSNRMNTHVLPEYVLSFR---------------------------IPP- 221
           DD+ SPK Y + +  MNTH+ PE+V+ F+                           +PP 
Sbjct: 421 DDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVTLEGPKDLPPQ 480

Query: 222 ---------TGRAVNVAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYRE 272
                    +G A +V ++   +RPKSPW+PFP L +A+S  + ++DM ++    +  R+
Sbjct: 481 LESNQGARGSGSANSVGSS--TTRPKSPWMPFPTLFAAISHKVAENDMLLINADYQQLRD 538

Query: 273 MKISRQQMIQKLRVIAGDKLLFQVIKSFREKLQKPPPS 310
            K++R + ++KLRVI GD LL   I +    LQ  P S
Sbjct: 539 KKMTRAEFVRKLRVIVGDDLLRSTITT----LQNQPKS 572


>AT1G70440.1 | Symbols: SRO3 | similar to RCD one 3 |
           chr1:26549354-26550520 REVERSE LENGTH=305
          Length = 305

 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 148/260 (56%), Gaps = 21/260 (8%)

Query: 54  FIDGLGPLASRIQVVSIRRNKFPTVIS-QARVDSFQIFARATAQLRHGNANVKHAWYSVS 112
           F+ G+G  A+   +V++R+     +I+ +A+   F++F  A  +  +G AN+++ WYS S
Sbjct: 54  FLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYANIRYGWYSGS 113

Query: 113 GMEEILEILQHGFGH-----------DHHRGLRLSPEDSPHLSVRRSVADKDGLRHLVLC 161
             EEI  ++ +GF +            H  G+ L        +      D++G+++++LC
Sbjct: 114 K-EEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEEGIKNILLC 172

Query: 162 RVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNTHVLPEYVLSFRIPP 221
           RVILG+ E +  GS Q    S+++DSGVD++ +P++Y I S  MN+++LP Y++SF+   
Sbjct: 173 RVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTYIVSFKSHL 232

Query: 222 TGRAVNVAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYREMKISRQQMI 281
               +         R +SP V F  L+S LSK L    M ++L    D+R+ K+ R+Q++
Sbjct: 233 LRGLI--------GRARSPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLRREQLV 284

Query: 282 QKLRVIAGDKLLFQVIKSFR 301
           +K+R + GD LLF+++K+ R
Sbjct: 285 RKIREVVGDNLLFKILKNQR 304


>AT2G35510.1 | Symbols: SRO1 | similar to RCD one 1 |
           chr2:14916898-14919198 REVERSE LENGTH=568
          Length = 568

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 158/327 (48%), Gaps = 56/327 (17%)

Query: 23  DSMASDCESGVSGGEVIVRADVRSLESVGRRFIDGLGPLASRIQVVSIRRNKFPTVISQA 82
           D   +D  SGV   E  +  D     +V + F  G   L     V S+   +F + I++A
Sbjct: 252 DKTETDRFSGVKPAEEELDKD-----AVKQMFALGAATLG---HVESLDVYQFSSEIAKA 303

Query: 83  RVDSFQIFARATAQLRHGNANVKHAWYSVSGMEEILE-ILQHGFG------HDHHRGLRL 135
           R+  FQ  A  T + R G+AN+++AW  V   +E+L  ++ HG G           G+ +
Sbjct: 304 RLSLFQKQADITKKHR-GDANIRYAW--VPAKKEVLSAVMMHGLGVGGAFIKKSMYGVGV 360

Query: 136 SPEDSPHLSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSP 195
              + P+ S R    D +G+RH+VLCRVI+G ME +   + Q  +  +EYD+GVDDV SP
Sbjct: 361 HAANCPYFSARYCDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESP 420

Query: 196 KEYFIRSNRMNTHVLPEYVLSFR---------IPPTGRAVNVAAAREPSRPK-SP----- 240
           K Y I +  MNTH+ PE+V+SF+         I PT ++ + ++      PK SP     
Sbjct: 421 KHYLIWNMNMNTHIYPEFVVSFKLSIPNAEGNILPTTQSRHESSGLTLEGPKGSPSNEPG 480

Query: 241 ----------------------WVPFPALISALSKILPQHDMAIVLKLQKDYREMKISRQ 278
                                  +PFP L  A+S  + + DM +++   ++ RE K+SR+
Sbjct: 481 RVSNGGSGSEKNSSSSRRPRSPIMPFPLLFKAISSKIARKDMDLIIAGYQELREKKVSRK 540

Query: 279 QMIQKLRVIAG-DKLLFQVIKSFREKL 304
           +  + L +I G D LL   I   +  L
Sbjct: 541 EFYKTLSMIVGDDDLLISTITGLQRSL 567


>AT5G62520.2 | Symbols: SRO5 | similar to RCD one 5 |
           chr5:25098071-25098884 FORWARD LENGTH=241
          Length = 241

 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/170 (41%), Positives = 107/170 (62%), Gaps = 12/170 (7%)

Query: 61  LASRIQVVSIRRNKFPTVISQARVDSFQIFARATAQLRHGN---ANVKHAWYSVSGMEEI 117
           L  + Q++S+ RN F  V S+A++ +FQ+F  A  Q++HG    A VK+ W SVS   E+
Sbjct: 63  LGDQCQILSVLRNGFRNVGSRAKLKTFQVFQEA-VQMKHGGDGGAKVKYGWCSVS-KHEL 120

Query: 118 LEILQHGFGH------DHHRGLRLSPEDSPHLSVRRSVAD-KDGLRHLVLCRVILGRMEV 170
             I ++GF           RGL LSP++SP   ++ S ++ +DG+R L+LCRV+LG+ E+
Sbjct: 121 KTIFEYGFSEPLRNDGSFGRGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEI 180

Query: 171 VSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNTHVLPEYVLSFRIP 220
           V  GS +    S E+DSGVDD+ S K+Y + S  MNTHVLPE+++  + P
Sbjct: 181 VPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWSTHMNTHVLPEFLVCIKAP 230