Miyakogusa Predicted Gene

Lj4g3v1479290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1479290.1 Non Chatacterized Hit- tr|C5WRZ3|C5WRZ3_SORBI
Putative uncharacterized protein Sb01g000700
OS=Sorghu,29.95,3e-19,PARP_CATALYTIC,Poly(ADP-ribose) polymerase,
catalytic domain; ADP-ribosylation,NULL; RST,RST domain ,CUFF.49311.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prote...   100   8e-22
AT1G32230.3 | Symbols: AtRCD1 | WWE protein-protein interaction ...    98   3e-21
AT1G32230.2 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE prote...    98   3e-21
AT5G62520.1 | Symbols: SRO5 | similar to RCD one 5 | chr5:250980...    94   7e-20
AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 | chr1:835091...    90   1e-18
AT2G35510.1 | Symbols: SRO1 | similar to RCD one 1 | chr2:149168...    86   1e-17
AT3G47720.1 | Symbols: SRO4 | similar to RCD one 4 | chr3:175927...    80   1e-15
AT1G70440.1 | Symbols: SRO3 | similar to RCD one 3 | chr1:265493...    77   9e-15
AT5G62520.2 | Symbols: SRO5 | similar to RCD one 5 | chr5:250980...    74   4e-14

>AT1G32230.1 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE
           protein-protein interaction domain protein family |
           chr1:11613427-11615894 FORWARD LENGTH=589
          Length = 589

 Score =  100 bits (248), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 87/164 (53%), Gaps = 5/164 (3%)

Query: 5   YSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRS 64
           +S R    D++G+R++VLCRVI+G ME++     Q  S  +EYD+GVDD+ SPK Y + +
Sbjct: 374 FSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWN 433

Query: 65  NRMNTHVLPEYVLSFRIP--PTGLFGWVCSLCWSSYCFIICASVVKILIIFSIFVGRAVN 122
             MNTH+ PE+V+ F++   P      +     S         +   L       G    
Sbjct: 434 INMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVTLEGPKDLPPQLESNQGARGSGSA 493

Query: 123 VAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYR 166
            +     +RPKSPW+PFP L +A+S  + ++DM   L +  DY+
Sbjct: 494 NSVGSSTTRPKSPWMPFPTLFAAISHKVAENDM---LLINADYQ 534


>AT1G32230.3 | Symbols: AtRCD1 | WWE protein-protein interaction
           domain protein family | chr1:11613427-11615748 FORWARD
           LENGTH=570
          Length = 570

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)

Query: 5   YSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRS 64
           +S R    D++G+R++VLCRVI+G ME++     Q  S  +EYD+GVDD+ SPK Y + +
Sbjct: 374 FSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWN 433

Query: 65  NRMNTHVLPEYVLSFRIP--PTGLFGWVCSLCWSSYCFIICASVVKILIIFSIFVGRAVN 122
             MNTH+ PE+V+ F++   P      +     S         +   L         + N
Sbjct: 434 INMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVTLEGPKDLPPQLESNGARGSGSAN 493

Query: 123 VAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYR 166
            +     +RPKSPW+PFP L +A+S  + ++DM   L +  DY+
Sbjct: 494 -SVGSSTTRPKSPWMPFPTLFAAISHKVAENDM---LLINADYQ 533


>AT1G32230.2 | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE
           protein-protein interaction domain protein family |
           chr1:11613427-11615894 FORWARD LENGTH=588
          Length = 588

 Score = 97.8 bits (242), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 6/164 (3%)

Query: 5   YSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRS 64
           +S R    D++G+R++VLCRVI+G ME++     Q  S  +EYD+GVDD+ SPK Y + +
Sbjct: 374 FSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWN 433

Query: 65  NRMNTHVLPEYVLSFRIP--PTGLFGWVCSLCWSSYCFIICASVVKILIIFSIFVGRAVN 122
             MNTH+ PE+V+ F++   P      +     S         +   L         + N
Sbjct: 434 INMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNSGVTLEGPKDLPPQLESNGARGSGSAN 493

Query: 123 VAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYR 166
            +     +RPKSPW+PFP L +A+S  + ++DM   L +  DY+
Sbjct: 494 -SVGSSTTRPKSPWMPFPTLFAAISHKVAENDM---LLINADYQ 533


>AT5G62520.1 | Symbols: SRO5 | similar to RCD one 5 |
           chr5:25098071-25099264 FORWARD LENGTH=309
          Length = 309

 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 43/163 (26%)

Query: 14  KDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNTHVLP 73
           +DG+R L+LCRV+LG+ E+V  GS +    S E+DSGVDD+ S K+Y + S  MNTHVLP
Sbjct: 162 EDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWSTHMNTHVLP 221

Query: 74  EYVLSFRIPPTGLFGWVCSLCWSSYCFIICASVVKILIIFSIFVGRAVNVAAAREPSRPK 133
           E+++  + P                              F++           R P R +
Sbjct: 222 EFLVCIKAP------------------------------FNL----------TRSPKRLR 241

Query: 134 SPWVPFPALISALSKILPQHDMAIVLKLQKDY---RVSASDLL 173
           SPW+ FP LI ALSK LP   + ++ K  KD    R++ S+L+
Sbjct: 242 SPWMAFPVLIKALSKFLPPSQILVIQKHYKDQQNRRITRSELI 284


>AT1G23550.1 | Symbols: SRO2 | similar to RCD one 2 |
           chr1:8350912-8352232 FORWARD LENGTH=323
          Length = 323

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 82/164 (50%), Gaps = 37/164 (22%)

Query: 3   ALYSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFI 62
           +L +   +  D++GLR+L+LCRVILG+ E++  GS Q    S E+DSGVDD+ +P+ Y I
Sbjct: 160 SLLAASATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVI 219

Query: 63  RSNRMNTHVLPEYVLSFRIPPTGLFGWVCSLCWSSYCFIICASVVKILIIFSIFVGRAVN 122
            S  MN+ +LP Y++SFR P                                      + 
Sbjct: 220 WSCNMNSCILPSYIVSFRSP-------------------------------------RLR 242

Query: 123 VAAAREPSRPKSPWVPFPALISALSKILPQHDMAIVLKLQKDYR 166
           V+     SRP SPWV F +L+S LS  +    M ++++   D+R
Sbjct: 243 VSRGGFASRPSSPWVSFASLMSMLSTSMDPSRMNLIIRTYDDFR 286


>AT2G35510.1 | Symbols: SRO1 | similar to RCD one 1 |
           chr2:14916898-14919198 REVERSE LENGTH=568
          Length = 568

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/77 (49%), Positives = 54/77 (70%)

Query: 5   YSVRRSVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRS 64
           +S R    D +G+RH+VLCRVI+G ME +   + Q  +  +EYD+GVDDV SPK Y I +
Sbjct: 368 FSARYCDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPKHYLIWN 427

Query: 65  NRMNTHVLPEYVLSFRI 81
             MNTH+ PE+V+SF++
Sbjct: 428 MNMNTHIYPEFVVSFKL 444


>AT3G47720.1 | Symbols: SRO4 | similar to RCD one 4 |
           chr3:17592771-17593966 FORWARD LENGTH=316
          Length = 316

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 46/167 (27%)

Query: 10  SVADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNT 69
           S  ++DG+  L+  R+I+G+ EVV   S Q    S E+DSGVD ++SP +Y I S  MNT
Sbjct: 166 SSCNEDGISFLLFSRIIMGKSEVVCSTS-QSYPSSMEFDSGVDSLTSPNKYIIWSTHMNT 224

Query: 70  HVLPEYVLSFRIPPTGLFGWVCSLCWSSYCFIICASVVKILIIFSIFVGRAVNVAAAREP 129
           HVLPE+V+  + P                      S++K                     
Sbjct: 225 HVLPEFVVCIKTP----------------------SILK--------------------R 242

Query: 130 SRPKSPWVPFPALISALSKILPQHDMAIV---LKLQKDYRVSASDLL 173
             PKSPW+ FP LI+++SK L Q  + ++    K  +D R+S  +L+
Sbjct: 243 KNPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRISRCELI 289


>AT1G70440.1 | Symbols: SRO3 | similar to RCD one 3 |
           chr1:26549354-26550520 REVERSE LENGTH=305
          Length = 305

 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 41/155 (26%)

Query: 12  ADKDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNTHV 71
            D++G+++++LCRVILG+ E +  GS Q    S+++DSGVD++ +P++Y I S  MN+++
Sbjct: 161 GDEEGIKNILLCRVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYI 220

Query: 72  LPEYVLSFRIPPTGLFGWVCSLCWSSYCFIICASVVKILIIFSIFVGRAVNVAAAREPSR 131
           LP Y++SF+                       + +++ LI                   R
Sbjct: 221 LPTYIVSFK-----------------------SHLLRGLI------------------GR 239

Query: 132 PKSPWVPFPALISALSKILPQHDMAIVLKLQKDYR 166
            +SP V F  L+S LSK L    M ++L    D+R
Sbjct: 240 ARSPCVSFSVLMSILSKSLDAARMNLILTSYDDFR 274


>AT5G62520.2 | Symbols: SRO5 | similar to RCD one 5 |
           chr5:25098071-25098884 FORWARD LENGTH=241
          Length = 241

 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 50/69 (72%)

Query: 14  KDGLRHLVLCRVILGRMEVVSPGSDQCRSISDEYDSGVDDVSSPKEYFIRSNRMNTHVLP 73
           +DG+R L+LCRV+LG+ E+V  GS +    S E+DSGVDD+ S K+Y + S  MNTHVLP
Sbjct: 162 EDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWSTHMNTHVLP 221

Query: 74  EYVLSFRIP 82
           E+++  + P
Sbjct: 222 EFLVCIKAP 230