Miyakogusa Predicted Gene

Lj4g3v1478260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1478260.1 Non Chatacterized Hit- tr|K4B7V5|K4B7V5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,52.63,0.000000000000005,A_tha_TIGR01569: plant integral
membrane protein T,Uncharacterised protein family UPF0497,
trans-mem,CUFF.49301.1
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44550.1 | Symbols:  | Uncharacterised protein family (UPF049...    70   4e-13
AT4G20390.1 | Symbols:  | Uncharacterised protein family (UPF049...    55   7e-09

>AT5G44550.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr5:17942100-17943174 REVERSE LENGTH=197
          Length = 197

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)

Query: 1   MVVIALDVLGPRSDNQGLYLTLIAIFDMMIMXXXXXXXXXXXFMSELGRNGNSHARWAKI 60
           +++IAL + G + +  G  L  +AI DM+ +           FM+E+G+NGN HARW KI
Sbjct: 85  LLMIALQIFGGKMEFTGFRLLSVAILDMLNVTLISAAANAAAFMAEVGKNGNKHARWDKI 144

Query: 61  CHKFGTYCNRGGGALIA 77
           C +F TYC+ G GALIA
Sbjct: 145 CDRFATYCDHGAGALIA 161


>AT4G20390.1 | Symbols:  | Uncharacterised protein family (UPF0497)
           | chr4:11007068-11007869 FORWARD LENGTH=197
          Length = 197

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 41/69 (59%)

Query: 1   MVVIALDVLGPRSDNQGLYLTLIAIFDMMIMXXXXXXXXXXXFMSELGRNGNSHARWAKI 60
           +++I + +   + + +GL L  IAI DM+             F++ELG+NGN HA+W K+
Sbjct: 85  LLMIVVQIFSRKLEYKGLRLLSIAILDMLNATLVSAAANAAVFVAELGKNGNKHAKWNKV 144

Query: 61  CHKFGTYCN 69
           C +F TYC+
Sbjct: 145 CDRFTTYCD 153