Miyakogusa Predicted Gene

Lj4g3v1476200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1476200.1 Non Chatacterized Hit- tr|I3RZG9|I3RZG9_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,78.17,0,ApaG-like,ApaG domain; DUF525,ApaG domain; UVR,UVR domain;
APAG,ApaG domain; no description,UVR doma,CUFF.49297.1
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06110.1 | Symbols: SKIP16 | SKP1/ASK-interacting protein 16 ...    55   4e-08

>AT1G06110.1 | Symbols: SKIP16 | SKP1/ASK-interacting protein 16 |
           chr1:1853237-1854938 REVERSE LENGTH=436
          Length = 436

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 63/142 (44%), Gaps = 19/142 (13%)

Query: 122 CSSDATTLGVRVQVRSVYIEG----RSQPSKGLYFFAYRIRIS--------NNSDHP-VQ 168
           CS   T  GV+V+  SV+I      R QP    Y++AY IR+S        N + H   Q
Sbjct: 293 CSVSVTN-GVQVRASSVFIPEISNLRDQPPA--YWYAYSIRMSLMPEGCILNGTHHSSCQ 349

Query: 169 LLKRHWIITDANGKAENVWGIGVVGEQPVIHP-RTSFEYSSACPLSTQNGRMEGDFEMI- 226
           L  RHW+I   N   +NV G  V+G+ P++      F Y S     T  G ++G F  + 
Sbjct: 350 LYWRHWVIRADNEVIDNVNGEAVIGKYPLLQAGEEEFVYESCSSFPTTAGSIDGSFTFVP 409

Query: 227 -HIESVGSRSFNVVIAPFSLSL 247
             +       F V +  F L L
Sbjct: 410 GSLRDPKGSQFEVKVVEFPLEL 431