Miyakogusa Predicted Gene

Lj4g3v1476170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1476170.1 Non Chatacterized Hit- tr|D8RKC5|D8RKC5_SELML
Putative uncharacterized protein (Fragment) OS=Selagin,43.2,2e-16,
,CUFF.49294.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63000.1 | Symbols:  | Mitochondrial import inner membrane tr...   253   4e-68

>AT5G63000.1 | Symbols:  | Mitochondrial import inner membrane
           translocase subunit Tim17/Tim22/Tim23 family protein |
           chr5:25280151-25281463 REVERSE LENGTH=201
          Length = 201

 Score =  253 bits (646), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/168 (73%), Positives = 141/168 (83%), Gaps = 2/168 (1%)

Query: 1   MLYGGSKEAAASVSKDAEVMLKLGSTEDKRAQHRLMRDAMEKRFLRVTRGSIVGGVRLGM 60
           +LYGGSKEA+ASVSKDAEVMLK+GST+DKR QHRLMRDAMEKRF+RVTRGS++GG+RLGM
Sbjct: 36  LLYGGSKEASASVSKDAEVMLKMGSTQDKREQHRLMRDAMEKRFIRVTRGSLIGGMRLGM 95

Query: 61  FTAAFFGIQNLLEEKRGVHDVFNIIGAGSATASAFGLILPGSLHWRARNMALGSVLGAAF 120
           FTA+FF +QN L E RGVHDVFN++GAGSATA+ FGLI+PGSL WRARN+ LGSVLGA  
Sbjct: 96  FTASFFSLQNFLAETRGVHDVFNVVGAGSATAAVFGLIMPGSLAWRARNVLLGSVLGATV 155

Query: 121 CFPLGWIHLKLVEKANEANPAIHPHLQQREVKGGVSAAIERLEGNLSK 168
           CFPLGW+ LKL++KANE N     H    EV  GV AAIERLE  L K
Sbjct: 156 CFPLGWVQLKLMKKANEGNNVDTGH--HGEVTSGVGAAIERLEQQLRK 201