Miyakogusa Predicted Gene
- Lj4g3v1464060.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1464060.1 Non Chatacterized Hit- tr|D7M2X3|D7M2X3_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,30,6e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.49293.1
(533 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48310.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 196 3e-50
AT5G48310.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 186 2e-47
AT4G24610.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 95 1e-19
AT4G24610.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 95 1e-19
AT5G65440.3 | Symbols: | unknown protein; INVOLVED IN: biologic... 69 6e-12
AT5G65440.1 | Symbols: | unknown protein; INVOLVED IN: biologic... 69 7e-12
AT5G65440.2 | Symbols: | unknown protein; INVOLVED IN: biologic... 69 9e-12
>AT5G48310.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 18 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G24610.1). | chr5:19574961-19580362 REVERSE
LENGTH=1129
Length = 1129
Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 143/400 (35%), Positives = 201/400 (50%), Gaps = 51/400 (12%)
Query: 120 DEDQLFGCKQPQQNPKPSGRNNGILRKGLVNENLSVQVPNTVRRFTDGGDLGFKK---KI 176
DE+++FG K S N G+L+ ++NL ++VP RR TD +L ++ K
Sbjct: 87 DEEEVFGDKSN------SKLNRGMLK----DKNLRIEVPFMNRRVTDC-ELELRRFALKN 135
Query: 177 MTPXXXXXXXXXXXIQLQKHVHLHNQNLNCLDDPAELATPSAPPAPITDAD--FSLENEP 234
TP ++ H + + D ++ TPSAPP + + SLE E
Sbjct: 136 STPAS------------ERRPHTLSSKGSVYWDLEDIRTPSAPPIMESGQEDSISLEIEK 183
Query: 235 DHHGIGSSVDCDGRRSESSVEQTPSAVA------------KDPDIVQRQDTTFTQDMERQ 282
D I + C ESS +++ + + KD V+ D+ ++ +
Sbjct: 184 DIQKIEDEI-CGEAGVESSKQESMRSSSHLYRVEEFGESVKDSKTVE--DSKISEICSDE 240
Query: 283 PPHLQCYNTSRCNSQYAWQTLITYDACIRLCLQSWAKGCTEAPEFLKDECLALRAAFGLH 342
+C++ S QYAWQ+L+ YDACIRLCL W+KG TEA EFL+DEC LR AFGLH
Sbjct: 241 LE--ECHSIS---GQYAWQSLLAYDACIRLCLYEWSKGSTEASEFLRDECRILRGAFGLH 295
Query: 343 EFLLQPRGVKPPEGISTRPSEQTIPLKMNKAVGKIRVEVXXXXXXXXXXXXSANSQQGGS 402
+FLLQPRGV+ E + +E LK V K+RVEV +S +
Sbjct: 296 KFLLQPRGVRSSEKNNNVKAEPKPSLKSKNVVRKLRVEVKRLRLIPQRKLRGTDSLR-SL 354
Query: 403 IYMQAGM--DYVRQVSSIVKXXXXXXXXXXXXXXXEEPLYCLLQLKSATEENESESCSAI 460
+ MQ GM +Y RQVSS+VK EE C LQ+KS E + E S++
Sbjct: 355 MNMQIGMGAEYCRQVSSLVKTGMTSIKQATLSAVSEEQFSCYLQMKSTAEGGQIEQGSSV 414
Query: 461 FLRPGNRDYHDFFPLSQGDALLVEVQDSKKTVHGEARIPI 500
L+ G YH FFP S+GDAL++EVQD KK+V G+A I I
Sbjct: 415 CLQSGTGSYHVFFPESEGDALMIEVQDKKKSVQGKAMISI 454
>AT5G48310.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G24610.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:19574961-19580362
REVERSE LENGTH=1156
Length = 1156
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/420 (33%), Positives = 200/420 (47%), Gaps = 64/420 (15%)
Query: 120 DEDQLFGCKQPQQNPKPSGRNNGILRKGLVNENLSVQVPNTVRRFTDGGDLGFKK---KI 176
DE+++FG K S N G+L+ ++NL ++VP RR TD +L ++ K
Sbjct: 87 DEEEVFGDKSN------SKLNRGMLK----DKNLRIEVPFMNRRVTDC-ELELRRFALKN 135
Query: 177 MTPXXXXXXXXXXXIQLQKHVHLHNQNLNCLDDPAELATPSAPPAPIT--DADFSLENEP 234
TP ++ H + + D ++ TPSAPP + + SLE E
Sbjct: 136 STPAS------------ERRPHTLSSKGSVYWDLEDIRTPSAPPIMESGQEDSISLEIEK 183
Query: 235 DHHGIGSSVDCDGRRSESSVEQTPSAVAKDPDIVQRQDTTF------------------- 275
D I + C ESS +++ + + + + + F
Sbjct: 184 DIQKIEDEI-CGEAGVESSKQESMRSSSHLYRVEEFGERYFPNLTRFFVISFCGLVLMCL 242
Query: 276 ---------TQDMERQPPHLQCYN-TSRCNS---QYAWQTLITYDACIRLCLQSWAKGCT 322
++ +E C + C+S QYAWQ+L+ YDACIRLCL W+KG T
Sbjct: 243 IMVWCSVKDSKTVEDSKISEICSDELEECHSISGQYAWQSLLAYDACIRLCLYEWSKGST 302
Query: 323 EAPEFLKDECLALRAAFGLHEFLLQPRGVKPPEGISTRPSEQTIPLKMNKAVGKIRVEVX 382
EA EFL+DEC LR AFGLH+FLLQPRGV+ E + +E LK V K+RVEV
Sbjct: 303 EASEFLRDECRILRGAFGLHKFLLQPRGVRSSEKNNNVKAEPKPSLKSKNVVRKLRVEVK 362
Query: 383 XXXXXXXXXXXSANSQQGGSIYMQAGM--DYVRQVSSIVKXXXXXXXXXXXXXXXEEPLY 440
+S + + MQ GM +Y RQVSS+VK EE
Sbjct: 363 RLRLIPQRKLRGTDSLR-SLMNMQIGMGAEYCRQVSSLVKTGMTSIKQATLSAVSEEQFS 421
Query: 441 CLLQLKSATEENESESCSAIFLRPGNRDYHDFFPLSQGDALLVEVQDSKKTVHGEARIPI 500
C LQ+KS E + E S++ L+ G YH FFP S+GDAL++EVQD KK+V G+A I I
Sbjct: 422 CYLQMKSTAEGGQIEQGSSVCLQSGTGSYHVFFPESEGDALMIEVQDKKKSVQGKAMISI 481
>AT4G24610.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast
hits to 264 proteins in 74 species: Archae - 0; Bacteria
- 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses -
0; Other Eukaryotes - 549 (source: NCBI BLink). |
chr4:12700837-12707899 REVERSE LENGTH=1150
Length = 1150
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 111/252 (44%), Gaps = 53/252 (21%)
Query: 280 ERQPPHLQCYNTSRCNSQYAWQTLITYDACIRLCLQSWAKGCTEAPEFLKDECLALRAAF 339
++ P L ++ S S+ W +++YDAC+RLCL +W+ GC EAP FL++EC LR AF
Sbjct: 219 DQHPARLPTFHAS---SRGPWHAVVSYDACVRLCLHAWSTGCMEAPMFLENECALLREAF 275
Query: 340 GLHEFLL--------QPRGVKPPEGISTRPSEQTIPLK---------MNKAVG------- 375
GL + LL + P EG++ +P + +K M+ G
Sbjct: 276 GLQQLLLQSEEELLAKRSSQAPHEGVAPKPKKNIGKMKVQVRRVKTVMDGPTGCSISSLK 335
Query: 376 -------KIRVEVXXXXXXXXXXXXSANS------QQGGSI------YMQAGMDYVRQVS 416
KIR+ + G S+ Y+ A Y++QVS
Sbjct: 336 PSLIKFEKIRIHFSNMSTRLFSGWRALRKIHVRVPANGSSLPRQSLAYVHASTQYLKQVS 395
Query: 417 SIVKXXXXXXXXXXXXXXXEEPLY-CLLQLKSATEENESESCSAIFLRPGNRDYHDFFPL 475
++K + Y C L+LKS E+N AI ++PG+ + H FFP
Sbjct: 396 GLLKTGVTSLRNNSTSYDIVQETYSCKLRLKSLAEDN------AIMMQPGSGESHVFFPD 449
Query: 476 SQGDALLVEVQD 487
S GD L+VE+ D
Sbjct: 450 SHGDDLIVEILD 461
>AT4G24610.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G65440.1). | chr4:12700837-12707899 REVERSE
LENGTH=1155
Length = 1155
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 111/252 (44%), Gaps = 53/252 (21%)
Query: 280 ERQPPHLQCYNTSRCNSQYAWQTLITYDACIRLCLQSWAKGCTEAPEFLKDECLALRAAF 339
++ P L ++ S S+ W +++YDAC+RLCL +W+ GC EAP FL++EC LR AF
Sbjct: 223 DQHPARLPTFHAS---SRGPWHAVVSYDACVRLCLHAWSTGCMEAPMFLENECALLREAF 279
Query: 340 GLHEFLL--------QPRGVKPPEGISTRPSEQTIPLK---------MNKAVG------- 375
GL + LL + P EG++ +P + +K M+ G
Sbjct: 280 GLQQLLLQSEEELLAKRSSQAPHEGVAPKPKKNIGKMKVQVRRVKTVMDGPTGCSISSLK 339
Query: 376 -------KIRVEVXXXXXXXXXXXXSANS------QQGGSI------YMQAGMDYVRQVS 416
KIR+ + G S+ Y+ A Y++QVS
Sbjct: 340 PSLIKFEKIRIHFSNMSTRLFSGWRALRKIHVRVPANGSSLPRQSLAYVHASTQYLKQVS 399
Query: 417 SIVKXXXXXXXXXXXXXXXEEPLY-CLLQLKSATEENESESCSAIFLRPGNRDYHDFFPL 475
++K + Y C L+LKS E+N AI ++PG+ + H FFP
Sbjct: 400 GLLKTGVTSLRNNSTSYDIVQETYSCKLRLKSLAEDN------AIMMQPGSGESHVFFPD 453
Query: 476 SQGDALLVEVQD 487
S GD L+VE+ D
Sbjct: 454 SHGDDLIVEILD 465
>AT5G65440.3 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G24610.1). | chr5:26152015-26156896 FORWARD
LENGTH=1125
Length = 1125
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 291 TSRCNSQYAWQTLITYDACIRLCLQSWAK-GCTEAPEFLKDECLALRAAFGLHEFLLQPR 349
T + Q W +I Y+AC+RLCL SW+ +EA FL +EC +R AF L F L
Sbjct: 172 TFHASEQGPWSAMIAYEACVRLCLHSWSTDSVSEASYFLNNECTIMRNAFSLQRFFLHSE 231
Query: 350 GVKPPEGISTRPSEQTIPLKMNKAVGKIRVEV 381
+G S +E ++P K K +GKI+++V
Sbjct: 232 EELLGKGPSELVTETSVP-KSKKTIGKIKLQV 262
>AT5G65440.1 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G24610.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26152015-26156896 FORWARD LENGTH=1050
Length = 1050
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 291 TSRCNSQYAWQTLITYDACIRLCLQSWAK-GCTEAPEFLKDECLALRAAFGLHEFLLQPR 349
T + Q W +I Y+AC+RLCL SW+ +EA FL +EC +R AF L F L
Sbjct: 131 TFHASEQGPWSAMIAYEACVRLCLHSWSTDSVSEASYFLNNECTIMRNAFSLQRFFLHSE 190
Query: 350 GVKPPEGISTRPSEQTIPLKMNKAVGKIRVEV 381
+G S +E ++P K K +GKI+++V
Sbjct: 191 EELLGKGPSELVTETSVP-KSKKTIGKIKLQV 221
>AT5G65440.2 | Symbols: | unknown protein; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G24610.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26152015-26156623 FORWARD LENGTH=1016
Length = 1016
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 291 TSRCNSQYAWQTLITYDACIRLCLQSWAK-GCTEAPEFLKDECLALRAAFGLHEFLLQPR 349
T + Q W +I Y+AC+RLCL SW+ +EA FL +EC +R AF L F L
Sbjct: 131 TFHASEQGPWSAMIAYEACVRLCLHSWSTDSVSEASYFLNNECTIMRNAFSLQRFFLHSE 190
Query: 350 GVKPPEGISTRPSEQTIPLKMNKAVGKIRVEV 381
+G S +E ++P K K +GKI+++V
Sbjct: 191 EELLGKGPSELVTETSVP-KSKKTIGKIKLQV 221