Miyakogusa Predicted Gene

Lj4g3v1453030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1453030.1 Non Chatacterized Hit- tr|C5YYH0|C5YYH0_SORBI
Putative uncharacterized protein Sb09g001173
OS=Sorghu,30.22,2e-18,coiled-coil,NULL; Spindle_Spc25,Chromosome
segregation protein Spc25; FAMILY NOT NAMED,NULL,CUFF.49281.1
         (307 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48210.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Kinetochor...   218   4e-57

>AT3G48210.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Kinetochore-Ndc80 complex, subunit Spc25
           (InterPro:IPR013255); Has 194 Blast hits to 194 proteins
           in 72 species: Archae - 0; Bacteria - 4; Metazoa - 72;
           Fungi - 39; Plants - 62; Viruses - 0; Other Eukaryotes -
           17 (source: NCBI BLink). | chr3:17849435-17851396
           FORWARD LENGTH=315
          Length = 315

 Score =  218 bits (555), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 127/309 (41%), Positives = 189/309 (61%), Gaps = 12/309 (3%)

Query: 1   MESPTSVCDTEIPLQTQTIDSFTAS-HAKSLQSLRDTAQQTAQHRVQLEEVKGKLREAED 59
           M S   +C+ +I  Q   IDSF AS   +S+ SL + AQ TAQ +V+L  +K  LREAED
Sbjct: 17  MASLGLICEKDIHEQRLKIDSFIASPFRRSMNSLVERAQATAQSQVELMNLKADLREAED 76

Query: 60  DLVKALSVKTRKEARRMALLDAIASAKSRVDELSTSVQEHRAKTQEYXXXXXXXXXXXXX 119
           +LVK L+VKTRKEAR+M + D+I++ +SR++ L  ++Q  ++K  +              
Sbjct: 77  ELVKVLAVKTRKEARQMGIRDSISATQSRIEVLRRNLQLQKSKKDDSVRIISQQLQALSK 136

Query: 120 XEGKLNECIEQKDETQEAMSWYNRVLGFHVKGGRGVKFTFKNINLNNPNEEYFFTIFHQN 179
            +    +  E K +  EA+SWYN  LGFHV+ G GVKFTF NI+   P  E+ FT+ + N
Sbjct: 137 SKDNAGKVTEDKADIHEAISWYNHALGFHVEAGHGVKFTFTNIDAKRPTREFSFTVHYGN 196

Query: 180 NTYTLLNCEPSTDDIKELIHELNKTNDLFKFVRVMRKKFQEAVGQDVTTR-GQVAHEESA 238
           + YTLL+ +   D I E++ ELNKTNDLF+FVR+MR++F ++   ++ T  GQ+  E SA
Sbjct: 197 DIYTLLDSDLQLDYINEMVQELNKTNDLFRFVRLMREQFLKSTLSELPTHSGQLQQETSA 256

Query: 239 FISASAPVLSMSSVRSDSTTKENEHRDEPAEGDTQIKKKQLLHRRVKSGVLSPGSASSVR 298
            ISASAP +S S+  ++ +T EN+          Q+ ++Q   R  +S +L+P S S+ R
Sbjct: 257 -ISASAPAISFST-DTNMSTPENKR------SKVQVNRRQ--KRGSESPLLAPVSTSATR 306

Query: 299 QSPRLKARK 307
           +S R K +K
Sbjct: 307 RSSRFKGKK 315