Miyakogusa Predicted Gene

Lj4g3v1440950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1440950.1 tr|G7JGA9|G7JGA9_MEDTR Anaphase-promoting complex
subunit OS=Medicago truncatula GN=MTR_4g082260 PE=,55.56,4e-19,
,gene.g55140.t1.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G04660.1 | Symbols: APC2 | anaphase-promoting complex/cycloso...    54   2e-08

>AT2G04660.1 | Symbols: APC2 | anaphase-promoting complex/cyclosome
           2 | chr2:1624933-1629039 FORWARD LENGTH=865
          Length = 865

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 29/76 (38%)

Query: 32  SVENQPRKEMAVYE-----------------------MFCNANKS------QLQTFLSGL 62
           SVE+Q RKEM +YE                       MFC A+ S      QLQ+FLSGL
Sbjct: 789 SVEDQLRKEMTIYEKFIMGMLTNFGSMALERIHNTLKMFCVADPSYDKSLQQLQSFLSGL 848

Query: 63  ASEEKLELRDEIYILK 78
            SEEKLE RD +Y+LK
Sbjct: 849 VSEEKLEFRDGMYLLK 864