Miyakogusa Predicted Gene
- Lj4g3v1440680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1440680.1 Non Chatacterized Hit- tr|J3MDD2|J3MDD2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G2,38.89,1e-18,Usp,UspA; no description,Rossmann-like
alpha/beta/alpha sandwich fold; Adenine nucleotide alpha
hydr,CUFF.49246.1
(253 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47740.1 | Symbols: | Adenine nucleotide alpha hydrolases-li... 100 8e-22
AT5G47740.2 | Symbols: | Adenine nucleotide alpha hydrolases-li... 96 2e-20
AT3G61390.1 | Symbols: | RING/U-box superfamily protein | chr3:... 59 2e-09
AT3G61390.2 | Symbols: | RING/U-box superfamily protein | chr3:... 59 3e-09
AT4G25160.1 | Symbols: | U-box domain-containing protein kinase... 56 2e-08
AT5G61550.1 | Symbols: | U-box domain-containing protein kinase... 54 1e-07
AT5G61550.2 | Symbols: | U-box domain-containing protein kinase... 54 1e-07
AT5G57035.1 | Symbols: | U-box domain-containing protein kinase... 53 3e-07
AT2G45910.1 | Symbols: | U-box domain-containing protein kinase... 52 4e-07
AT3G61410.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 50 1e-06
>AT5G47740.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr5:19338688-19339683 FORWARD
LENGTH=244
Length = 244
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 83/131 (63%), Gaps = 3/131 (2%)
Query: 123 DDLYVAVGKDD--LDVVKWALDHAVSPGSRI-FLVHVSPPITLIPTPVGMFERSQLAPNQ 179
D++YV VGK D ++ ++WA+D+ ++ S + FL+HV P IP P+G R + + Q
Sbjct: 43 DNVYVGVGKGDSSMEALRWAIDNLMTSSSTLLFLIHVFPETRFIPYPLGRITRERASQEQ 102
Query: 180 VRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIGI 239
V ++++ KR+ LL K++ + +KV ET+L+ES+ KA+ DLI+ILNI LV+GI
Sbjct: 103 VESFMSQEREKRRTLLLKFLHACSASKVKVETILVESDSVAKAVQDLITILNIRKLVLGI 162
Query: 240 KKLPYSRYATI 250
K + +T+
Sbjct: 163 DKSNARKASTM 173
>AT5G47740.2 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr5:19338688-19339683 FORWARD
LENGTH=246
Length = 246
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 83/133 (62%), Gaps = 5/133 (3%)
Query: 123 DDLYVAVGKDD--LDVVKWALDHAVSPGSRI-FLVHVSPPITLIPTPVGMFERSQLAPNQ 179
D++YV VGK D ++ ++WA+D+ ++ S + FL+HV P IP P+G R + + Q
Sbjct: 43 DNVYVGVGKGDSSMEALRWAIDNLMTSSSTLLFLIHVFPETRFIPYPLGRITRERASQEQ 102
Query: 180 VRLYINEVHNKRKDLLQKYIQMSTEAK--VAAETLLLESNDTGKAILDLISILNITNLVI 237
V ++++ KR+ LL K++ + +K V ET+L+ES+ KA+ DLI+ILNI LV+
Sbjct: 103 VESFMSQEREKRRTLLLKFLHACSASKEQVKVETILVESDSVAKAVQDLITILNIRKLVL 162
Query: 238 GIKKLPYSRYATI 250
GI K + +T+
Sbjct: 163 GIDKSNARKASTM 175
>AT3G61390.1 | Symbols: | RING/U-box superfamily protein |
chr3:22716418-22717989 FORWARD LENGTH=373
Length = 373
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 16/121 (13%)
Query: 121 KVDDLYVAVGKDDLDV---VKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMFERSQLAP 177
K + +YVAV + DL+ + WA+ + S G +VHV PI P MF +L
Sbjct: 32 KKEKIYVAVTEKDLESKSSLVWAIQN--SGGKEFCIVHVHQPI-----PGEMFHEQKL-- 82
Query: 178 NQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVI 237
RLY E K+ +KY+Q+ + +V AE + +E++ K IL LIS +T LV+
Sbjct: 83 ---RLYRKEKDKAHKNS-EKYLQICRQMQVTAEIIYIETDSVEKGILQLISQRGVTKLVM 138
Query: 238 G 238
G
Sbjct: 139 G 139
>AT3G61390.2 | Symbols: | RING/U-box superfamily protein |
chr3:22716418-22718270 FORWARD LENGTH=435
Length = 435
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 16/121 (13%)
Query: 121 KVDDLYVAVGKDDLDV---VKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMFERSQLAP 177
K + +YVAV + DL+ + WA+ + S G +VHV PI P MF +L
Sbjct: 32 KKEKIYVAVTEKDLESKSSLVWAIQN--SGGKEFCIVHVHQPI-----PGEMFHEQKL-- 82
Query: 178 NQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVI 237
RLY E K+ +KY+Q+ + +V AE + +E++ K IL LIS +T LV+
Sbjct: 83 ---RLYRKEKDKAHKNS-EKYLQICRQMQVTAEIIYIETDSVEKGILQLISQRGVTKLVM 138
Query: 238 G 238
G
Sbjct: 139 G 139
>AT4G25160.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr4:12903360-12906669 REVERSE
LENGTH=835
Length = 835
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 136 VVKWALDHAVSPGSRIF-LVHVSPPITLIPTPVG-MFERSQLAPNQVRLYINEVHNKRKD 193
VV WA++ + G+ F L+H+ P IT +PTP+G S++ + V Y E+ + ++
Sbjct: 35 VVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVVTAYRQEILWQSEE 94
Query: 194 LLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
+L+ Y ++ KVA E L++ES++ AI + ++ +I +VIG
Sbjct: 95 MLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIG 139
>AT5G61550.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr5:24748325-24751558 FORWARD
LENGTH=845
Length = 845
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 136 VVKWALDHAVSPGSRIF-LVHVSPPITLIPTPVGM-FERSQLAPNQVRLYINEVHNKRKD 193
VV WAL+ + G F L++V PP++ IPTP+G+ S+L + V Y E+ +
Sbjct: 37 VVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVVSAYKQELDWSANE 96
Query: 194 LLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIGI 239
+L+ Y +M KV E LLL+S + AI + I+ +T LVIG+
Sbjct: 97 MLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGM 142
>AT5G61550.2 | Symbols: | U-box domain-containing protein kinase
family protein | chr5:24748325-24751805 FORWARD
LENGTH=860
Length = 860
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 2/106 (1%)
Query: 136 VVKWALDHAVSPGSRIF-LVHVSPPITLIPTPVGM-FERSQLAPNQVRLYINEVHNKRKD 193
VV WAL+ + G F L++V PP++ IPTP+G+ S+L + V Y E+ +
Sbjct: 37 VVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVVSAYKQELDWSANE 96
Query: 194 LLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIGI 239
+L+ Y +M KV E LLL+S + AI + I+ +T LVIG+
Sbjct: 97 MLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGM 142
>AT5G57035.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr5:23080743-23083819 FORWARD
LENGTH=789
Length = 789
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 3/104 (2%)
Query: 136 VVKWALDHAVSPGSRIFLVHVSPPITLIPTPVG-MFERSQLAPNQVRLYINEVHNKRKDL 194
++W +++ + R+ LVHV P +T IP+P G +L + V +Y ++ + + +
Sbjct: 41 ALRWTIENFLPKIDRLVLVHVMPTVTTIPSPSGSKIPIEELDESVVSMYKRDLRKEFEQV 100
Query: 195 LQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
+ ++ KV ETLLLE +D KA+L +S ++ LVIG
Sbjct: 101 FVPFKRICKSNKV--ETLLLEHHDPAKALLKYMSDTDVECLVIG 142
>AT2G45910.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr2:18894520-18898212 FORWARD
LENGTH=834
Length = 834
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 120 RKVDD-LYVAVGK---DDLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMFERSQL 175
R +D+ ++VAV K + WAL + + G +I L+HV P +IP F +
Sbjct: 41 RLIDEKIFVAVDKHVAKSKSTLIWALQN--TGGKKICLIHVHQPSQMIPLMGAKFPVGAV 98
Query: 176 APNQVRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNL 235
+VR++ + K +L Y+++ + V AE + +E I+ LIS L I L
Sbjct: 99 KEEEVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKL 158
Query: 236 VIGIKK-LPYSRYAT 249
V+G YSR T
Sbjct: 159 VMGAAADRHYSRRMT 173
>AT3G61410.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: U-box domain-containing protein kinase family
protein (TAIR:AT2G45910.1); Has 232 Blast hits to 229
proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 13; Fungi - 0; Plants - 218; Viruses - 0;
Other Eukaryotes - 1 (source: NCBI BLink). |
chr3:22721112-22722452 FORWARD LENGTH=294
Length = 294
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 123 DDLYVAVGKD---DLDVVKWALDHAVSPGSRIFLVHVSPPITLIPTPVGMFERSQLAPNQ 179
+ +YVA+G++ + + W LD+ G++I +V V P +IP F+ + +
Sbjct: 12 ERIYVALGREIANNKSNLAWVLDNC--QGNKICIVLVHRPPQMIPVLGTKFDAATVDEEL 69
Query: 180 VRLYINEVHNKRKDLLQKYIQMSTEAKVAAETLLLESNDTGKAILDLISILNITNLVIG 238
VR Y + K +L +Y+++ V AE L +E N K I+ +IS + ++G
Sbjct: 70 VRAYREKQKAKTDKILDEYLRICLRKGVQAEKLCVEMNSIEKGIVQMISENKVRKFIMG 128