Miyakogusa Predicted Gene

Lj4g3v1427520.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1427520.1 Non Chatacterized Hit- tr|K3Y5Y0|K3Y5Y0_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si009349,31.1,3e-18,OVARIAN CARCINOMA ANTIGEN CA125-RELATED,NULL;
UBA,Ubiquitin-associated/translation elongation factor,CUFF.49280.1
         (909 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24690.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N domain...   358   9e-99

>AT4G24690.1 | Symbols:  | ubiquitin-associated (UBA)/TS-N
           domain-containing protein / octicosapeptide/Phox/Bemp1
           (PB1) domain-containing protein | chr4:12741191-12744202
           FORWARD LENGTH=704
          Length = 704

 Score =  358 bits (919), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 205/479 (42%), Positives = 274/479 (57%), Gaps = 35/479 (7%)

Query: 447 QFPFSGTNTFHSGASPIG--NCPVSSLPSFKRSHSHNQAMRGMFHKGVRCDGCGVYPITG 504
           + PFSG+   +S  +P+     P     S K ++       G+FHKG+RCDGCGV PITG
Sbjct: 242 ECPFSGSTMNYSCPNPVNLNKHPRRVCHSKKSTNGDYWTSLGVFHKGIRCDGCGVLPITG 301

Query: 505 SRFKSKVKENYDLCIICFNEMGNKADYIRMDRPESA-----LAGPRRTNEHTKKIQTIPP 559
            RFKSKVKE+YDLC IC++ MGN+ DY RMD+P S        GP     +      +P 
Sbjct: 302 PRFKSKVKEDYDLCTICYSVMGNEGDYTRMDKPVSVQHLHPFRGPFTQFPNPWLSHPVPR 361

Query: 560 CLN-----RRARPKLDSRFILDVNIIDGTMMAPSTAFTKIWRMRNNGTSVWPKGTELVWI 614
             N     R  RPKLDSRF+LDVN+IDGT++APS  FTKIW+MRN+G+ VWP+GT++VWI
Sbjct: 362 ATNGGAPLRCTRPKLDSRFVLDVNVIDGTVVAPSAPFTKIWKMRNSGSLVWPQGTQIVWI 421

Query: 615 GGDEFCDSTAVKLEAPEDGVPVGNEIDIAVDFRAPQLPGRYISHWRMASPSGHEFGQCVW 674
           GGD FC+S +V L+ P++GVP+ +E+D+ VDF AP+LPGRYIS+WRMA+  G +FGQ VW
Sbjct: 422 GGDRFCNSLSVDLQIPKEGVPIYSELDVKVDFVAPELPGRYISYWRMATSDGAKFGQRVW 481

Query: 675 VLIQVDASVMDTTSDSSQNLNLNIPLDVSSSKGPQSIDINAQPIEDDASFQQYNPSAPTE 734
           VLI VDAS+ ++  +    LNL                 NA P  D+    ++      E
Sbjct: 482 VLIHVDASLKNSVVNEFHGLNL-----------------NASPSLDENFPSEFLGIMNYE 524

Query: 735 PAEP----VNQMADVNQMVDEEPRQEKSVDEFAENVDAFVDXXXXXXXXXXXXXYLPYPN 790
            A+P    VN        ++ E  + ++V++  EN+                     +  
Sbjct: 525 SAQPGSSSVNPGTVKGTDLEGEVGETQAVEK--ENLLVGEAHPAIPHGHSPSSSSSSFNM 582

Query: 791 VDIDMAETVSLPGPIQQTSAADAPSSSIGIGGNNPVEEALLKELDEMGFKQVDLNKEILR 850
           VD      V +      ++  D P         N VE  +LKEL+EMGFK++DLNKEILR
Sbjct: 583 VDFPSMPAVEVLSGGSSSTTKDVPVPLQEDIEKNDVEITMLKELEEMGFKEIDLNKEILR 642

Query: 851 NNGYNLEQAIVDLCDESGWDPILEELKEMGFGXXXXXXXXXXXXXGSIMGVVMDLISKE 909
           +N YNLEQ++  LC  S WDPILEEL+EMGF              GSI GVVMDL++ E
Sbjct: 643 DNEYNLEQSVDALCGVSEWDPILEELQEMGFCDDVTNKRLLKKNNGSIKGVVMDLLTGE 701



 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 80/171 (46%), Gaps = 11/171 (6%)

Query: 1   MESS---LVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVD 57
           MES+   LV+KV YG  LRRF  PV  N +LDL MAGL+ KI ++F+ +ADA+L LTY D
Sbjct: 1   MESTANALVVKVSYGGVLRRFRVPVKANGQLDLEMAGLKEKIAALFNLSADAELSLTYSD 60

Query: 58  EDGXXXXXXXXXXXXXXMRQKLKFLKIDVKMVNDXXXXXXXXXXXXXTPLRSPPVSNPFA 117
           EDG                Q+LKFLKI+V                  TP   P   NP +
Sbjct: 61  EDGDVVALVDDNDLFDVTNQRLKFLKINVN-AGVSTNSAAPESSGSSTPAGMP---NPVS 116

Query: 118 GGDFGKADVFDALPEPLREXXXXXXXXXXXXXXXXX----TLADSITKIGQ 164
               G  DV  A+P P+R+                      + D I+K+GQ
Sbjct: 117 KIQKGINDVLMAVPNPMRDTISKVYMDLASKASTSSPVVGEMLDCISKLGQ 167