Miyakogusa Predicted Gene
- Lj4g3v1411040.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1411040.1 tr|A6N0D0|A6N0D0_ORYSI Chloroplast 28 kDa
ribonucleoprotein (Fragment) OS=Oryza sativa subsp.
indica,49.44,0.000000000000001,RNA-binding domain, RBD,NULL; seg,NULL;
RNA recognition motif,RNA recognition motif domain;
RRM_1,RN,CUFF.49212.1
(307 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 250 1e-66
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 241 6e-64
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 184 5e-47
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 150 1e-36
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 125 3e-29
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 117 1e-26
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 117 1e-26
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 100 1e-21
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 97 1e-20
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 96 3e-20
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 96 3e-20
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 96 3e-20
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 96 4e-20
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 89 5e-18
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 3e-17
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 86 4e-17
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 85 6e-17
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 85 6e-17
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 84 9e-17
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 84 1e-16
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 84 1e-16
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 83 2e-16
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-16
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-16
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-16
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-16
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 7e-16
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 7e-16
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 7e-16
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 80 1e-15
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 80 1e-15
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 80 1e-15
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 80 2e-15
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 80 2e-15
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 80 2e-15
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 80 2e-15
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 4e-15
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 5e-15
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 5e-15
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 1e-14
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 2e-14
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 2e-14
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 76 3e-14
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 3e-14
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 76 3e-14
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 76 4e-14
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 75 4e-14
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 5e-14
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 5e-14
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 75 7e-14
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 8e-14
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 74 1e-13
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 1e-13
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 73 2e-13
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 73 2e-13
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 73 3e-13
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 3e-13
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 72 4e-13
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 72 4e-13
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 72 4e-13
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 72 4e-13
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 6e-13
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 72 7e-13
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 8e-13
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 1e-12
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 70 1e-12
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 70 1e-12
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 70 2e-12
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 70 2e-12
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 5e-12
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 5e-12
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 68 6e-12
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 68 9e-12
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 1e-11
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 67 2e-11
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 66 2e-11
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 66 3e-11
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 66 4e-11
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 5e-11
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 5e-11
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 65 6e-11
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 65 7e-11
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 65 9e-11
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 64 1e-10
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 64 1e-10
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 64 2e-10
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 64 2e-10
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 5e-10
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 62 6e-10
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 6e-10
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 6e-10
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 6e-10
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 6e-10
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 62 6e-10
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 61 1e-09
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 60 2e-09
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 59 3e-09
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 5e-09
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 9e-09
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 58 1e-08
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 57 1e-08
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 1e-08
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 1e-08
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 57 2e-08
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 55 5e-08
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 55 5e-08
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 55 6e-08
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 7e-08
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 55 9e-08
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 55 9e-08
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 55 9e-08
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 9e-08
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 9e-08
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 54 9e-08
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 54 1e-07
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 53 2e-07
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 2e-07
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 3e-07
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 52 5e-07
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 51 8e-07
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protei... 50 1e-06
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:567... 50 2e-06
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 50 3e-06
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 49 3e-06
AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 49 3e-06
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 49 4e-06
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 49 4e-06
AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 49 4e-06
AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | c... 49 4e-06
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 49 5e-06
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 49 5e-06
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 49 5e-06
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 49 5e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-06
AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 49 6e-06
AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 49 6e-06
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 6e-06
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 7e-06
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 48 9e-06
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 48 9e-06
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/250 (52%), Positives = 170/250 (68%), Gaps = 39/250 (15%)
Query: 65 SPLLTFVAQTSDXXXXXXXXXXXXXXXXXPTWANEDS-------------DETEGGEEVV 111
SP++TFV+QTS+ WA E+ DE+ E+ V
Sbjct: 64 SPVVTFVSQTSN-------------------WAEEEEGEDGSIGGTSVTVDESFESEDGV 104
Query: 112 ASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTA 171
EP E+ K+FVGNLP+DV+S+ LAMLFE+AG+VE +EVIYN+ T+QSRGFGFV MST
Sbjct: 105 GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTV 164
Query: 172 EDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
E+ EKA+ KF+ +E++GR LTVN+A P+ +RPER PR + +YVGNLPW
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVY-------DAAFRIYVGNLPWD 217
Query: 232 VDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRT 291
VD+ RLE +F EHG V +AR+V DRETGRSRGFGFV MS+E ++N AIAALDGQ+L+GR
Sbjct: 218 VDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRA 277
Query: 292 IRVSVAEGRS 301
I+V+VAE R+
Sbjct: 278 IKVNVAEERT 287
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 50/83 (60%)
Query: 120 LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
+I+VGNLPWDV+S L LF E G V A V+ ++ T +SRGFGFV MS ++ A+
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 180 KFSGYELDGRVLTVNKATPKEAR 202
G L+GR + VN A + R
Sbjct: 267 ALDGQNLEGRAIKVNVAEERTRR 289
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/264 (50%), Positives = 169/264 (64%), Gaps = 32/264 (12%)
Query: 62 TH--RSPLLTFVAQTSDXXXXXXXXXXXXXXXXXPTWANE--DSDETEG---------GE 108
TH +SP ++FVAQTSD + + + DE+EG G+
Sbjct: 67 THLKKSPFVSFVAQTSDWAEEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGD 126
Query: 109 EVVASA------------EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKA 156
E EPSE+ K+FVGNL +DV S+ LAMLFE+AG+VE AEVIYN+
Sbjct: 127 ESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRE 186
Query: 157 TNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXX 216
T+QSRGFGFV MS+ ++ E A+ KF+ Y+L+GR+LTVNKA P+ +RPER PR +
Sbjct: 187 TDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVY------ 240
Query: 217 XXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADIN 276
VYVGNLPW VD RLE++F EHG V AR+V DRETGRSRGFGFVTMS ++N
Sbjct: 241 -EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELN 299
Query: 277 GAIAALDGQSLDGRTIRVSVAEGR 300
AI+ALDGQ+L+GR IRV+VAE R
Sbjct: 300 EAISALDGQNLEGRAIRVNVAEER 323
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 6/89 (6%)
Query: 120 LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
+++VGNLPWDV++ L LF E G V A V+Y++ T +SRGFGFV MS ++L +A++
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 180 KFSGYELDGRVLTVNKATPKEARPERPPR 208
G L+GR + VN A ERPPR
Sbjct: 304 ALDGQNLEGRAIRVNVAE------ERPPR 326
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 121/196 (61%), Gaps = 12/196 (6%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S DLK+FVGNLP++V+S LA LFE AG+VE EVIY+K T +SRGFGFV MS+ ++E
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEA 147
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPE---RPPR---------TFXXXXXXXXXXXXVY 224
A +F+GYELDGR L VN P R + R PR VY
Sbjct: 148 AAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVY 207
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
VGNL W VD LE +F E G V AR++ DR++GRS+GFGFVT S ++ AI +LDG
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267
Query: 285 QSLDGRTIRVSVAEGR 300
LDGR IRVS AE R
Sbjct: 268 ADLDGRQIRVSEAEAR 283
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL W V+ L LF E G V A VIY++ + +S+GFGFV ++++++ A+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 181 FSGYELDGRVLTVNKATPKEARPER 205
G +LDGR + V++A EARP R
Sbjct: 265 LDGADLDGRQIRVSEA---EARPPR 286
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/202 (40%), Positives = 118/202 (58%), Gaps = 11/202 (5%)
Query: 100 DSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQ 159
+ +E + G V + + K++ GNLP++V+S LA + ++ + E EV+YN+ T Q
Sbjct: 65 EEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQ 124
Query: 160 SRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKA-TPKEARPERPPRTFXXXXXXXX 218
SRGF FV MS ED ++ G E GR L VN A PK + P T
Sbjct: 125 SRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPET--------- 175
Query: 219 XXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGA 278
++VGNL W+V + L FRE G+V AR+V D +TGRSRG+GFV SS+A++ A
Sbjct: 176 -EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETA 234
Query: 279 IAALDGQSLDGRTIRVSVAEGR 300
+ +LDG L+GR IRV++A+G+
Sbjct: 235 LESLDGFELEGRAIRVNLAQGK 256
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P + K+FVGNL W V SE+LA F E G V A V+++ T +SRG+GFV S+ ++E
Sbjct: 173 PETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 176 KALNKFSGYELDGRVLTVNKATPKE 200
AL G+EL+GR + VN A K+
Sbjct: 233 TALESLDGFELEGRAIRVNLAQGKK 257
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 111/185 (60%), Gaps = 2/185 (1%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E+ +++VGNLP+ + S L+ +F EAG+V +++Y+K T++SRGFGFV M + E+ ++A
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 178 LNKFSGYELDGRVLTVN-KATPKEARPE-RPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+ F+ ++ GR + VN P+ E + VY GNL W++ +
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQ 233
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
L++ F + V A+++ +R TGRSRGFGF++ S ++ A+A ++G ++GR +R++
Sbjct: 234 GLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLN 293
Query: 296 VAEGR 300
+A R
Sbjct: 294 LASER 298
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNLP+++ ++ L +IF E G V + +IV D+ T RSRGFGFVTM S + A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 283 DGQSLDGRTIRVSVAEGRSGG 303
+ + GRT++V+ E GG
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGG 198
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K++ GNL W++ S+ L F + V A+VIY + T +SRGFGF+ +AE+++ AL
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 181 FSGYELDGRVLTVNKATPKEARPERPP 207
+G E++GR L +N A+ +E PP
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVSPP 306
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Query: 108 EEVVASAEPSEDL--KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGF 165
EE A+ +PS + ++++GN+P V +E L L EE G+VE +V+Y+K + +SR FGF
Sbjct: 62 EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
Query: 166 VIMSTAEDLEKALNKFSGYELDGRVLTVN-KATPKEARPERPPRTFXXXXXXXXXXXXVY 224
M + ED + K +G ++GR + VN P + P+ VY
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQ-SEDSAFVDSPYKVY 180
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
VGNL +V LE +F E G V +A++ T +S GFGFVT SSE D+ AI AL+
Sbjct: 181 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 240
Query: 285 QSLDGRTIRVSVA 297
L+G+ IRV+ A
Sbjct: 241 SLLEGQKIRVNKA 253
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VY+GN+P +V +L ++ EHG VE +++ D+ +GRSR FGF TM S D N + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 283 DGQSLDGRTIRVSVAE 298
+G +++GR I+V++ E
Sbjct: 138 NGNTVEGREIKVNITE 153
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 106/193 (54%), Gaps = 4/193 (2%)
Query: 108 EEVVASAEPSEDL--KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGF 165
EE A+ +PS + ++++GN+P V +E L L EE G+VE +V+Y+K + +SR FGF
Sbjct: 62 EEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
Query: 166 VIMSTAEDLEKALNKFSGYELDGRVLTVN-KATPKEARPERPPRTFXXXXXXXXXXXXVY 224
M + ED + K +G ++GR + VN P + P+ VY
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQ-SEDSAFVDSPYKVY 180
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
VGNL +V LE +F E G V +A++ T +S GFGFVT SSE D+ AI AL+
Sbjct: 181 VGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNN 240
Query: 285 QSLDGRTIRVSVA 297
L+G+ IRV+ A
Sbjct: 241 SLLEGQKIRVNKA 253
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VY+GN+P +V +L ++ EHG VE +++ D+ +GRSR FGF TM S D N + L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 283 DGQSLDGRTIRVSVAE 298
+G +++GR I+V++ E
Sbjct: 138 NGNTVEGREIKVNITE 153
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 18/205 (8%)
Query: 95 TWANEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYN 154
T A+E++ + E EE S + K+FV NLPW + +++ LF + G+V E+I
Sbjct: 73 TSADEETSQEEKTEETQNS---NLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 155 KATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVN------KATPKEARPERPPR 208
K ++RGF FV M++ E+ + A++KF +++ GR+++V+ K TPK P
Sbjct: 130 K-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSP- 187
Query: 209 TFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIFREHG-NVENARIVMDRETGRSRGFGFV 267
+YV NL W + L E+F N +AR+V GRS G+GFV
Sbjct: 188 ------APGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFV 241
Query: 268 TMSSEADINGAIAALDGQSLDGRTI 292
+ ++ + AI L+G+ + GR I
Sbjct: 242 SFATREEAENAITKLNGKEIMGRPI 266
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V NLPWS+ + E+F + G V N I+ ++ G++RGF FVTM+S + AI
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAIDKF 155
Query: 283 DGQSLDGRTIRVSVA 297
D + GR I VS A
Sbjct: 156 DTFQVSGRIISVSFA 170
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 97/193 (50%), Gaps = 4/193 (2%)
Query: 108 EEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVI 167
+E A A + ++V NL V + L LF + G+V + V+ +SRGFGFV
Sbjct: 190 DERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVS-SVVVMRDGMGRSRGFGFVN 248
Query: 168 MSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXX--XXVYV 225
E+ +KA+ G +L + L V KA K+ R E + F +YV
Sbjct: 249 FCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYV 308
Query: 226 GNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ 285
NL S++ RL EIF +G + +A+ VM E GRS+GFGFV S+ + A L+G
Sbjct: 309 KNLSESMNETRLREIFGCYGQIVSAK-VMCHENGRSKGFGFVCFSNCEESKQAKRYLNGF 367
Query: 286 SLDGRTIRVSVAE 298
+DG+ I V VAE
Sbjct: 368 LVDGKPIVVRVAE 380
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL + S L +F GS+ +V+ + QS+GFGFV T + A +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
G + G+ L V K K+ R VYV NL +V L +F
Sbjct: 172 HGSMVYGKKLFVAKFINKDER---------AAMAGNQDSTNVYVKNLIETVTDDCLHTLF 222
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
++G V + +VM GRSRGFGFV + + A+ +L G L + + V A
Sbjct: 223 SQYGTVSSV-VVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 12/174 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG+L DV ++L F V + N T +S + ++ + A+ +
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+ +L G+ + + + A R F +YV NL S+ ++ LE +F
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFAN----------LYVKNLDSSITSSCLERMF 132
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
G++ + ++V E G+S+GFGFV +E A +AL G + G+ + V+
Sbjct: 133 CPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVA 184
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S DLK+FVGNL ++V+S LA LFE AG+VE EVIY+K T +SRGFGFV MSTA ++E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPE---RPPR 208
A +F+GYE +GR L VN P R E R PR
Sbjct: 156 AAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 56/78 (71%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNL W VD LE +F E G V AR++ DR++GRS+GFGFVT+SS ++ AI +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 283 DGQSLDGRTIRVSVAEGR 300
+G LDGR IRVS AE R
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL W V+ L LF E G V A VIY++ + +S+GFGFV +S++++++KA+N
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 181 FSGYELDGRVLTVNKATPKEARPER 205
+G +LDGR + V++A EARP R
Sbjct: 318 LNGADLDGRQIRVSEA---EARPPR 339
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VGNL ++VD+A+L ++F GNVE ++ D+ TGRSRGFGFVTMS+ A++ A
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 283 DGQSLDGRTIRVSVA 297
+G +GR +RV+
Sbjct: 161 NGYEFEGRPLRVNAG 175
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S DLK+FVGNL ++V+S LA LFE AG+VE EVIY+K T +SRGFGFV MSTA ++E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPE---RPPR 208
A +F+GYE +GR L VN P R E R PR
Sbjct: 156 AAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 56/78 (71%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNL W VD LE +F E G V AR++ DR++GRS+GFGFVT+SS ++ AI +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 283 DGQSLDGRTIRVSVAEGR 300
+G LDGR IRVS AE R
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL W V+ L LF E G V A VIY++ + +S+GFGFV +S++++++KA+N
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 181 FSGYELDGRVLTVNKATPKEARPER 205
+G +LDGR + V++A EARP R
Sbjct: 318 LNGADLDGRQIRVSEA---EARPPR 339
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VGNL ++VD+A+L ++F GNVE ++ D+ TGRSRGFGFVTMS+ A++ A
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 283 DGQSLDGRTIRVSVA 297
+G +GR +RV+
Sbjct: 161 NGYEFEGRPLRVNAG 175
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 66/95 (69%), Gaps = 3/95 (3%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S DLK+FVGNL ++V+S LA LFE AG+VE EVIY+K T +SRGFGFV MSTA ++E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPE---RPPR 208
A +F+GYE +GR L VN P R E R PR
Sbjct: 156 AAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 56/78 (71%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNL W VD LE +F E G V AR++ DR++GRS+GFGFVT+SS ++ AI +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 283 DGQSLDGRTIRVSVAEGR 300
+G LDGR IRVS AE R
Sbjct: 319 NGADLDGRQIRVSEAEAR 336
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL W V+ L LF E G V A VIY++ + +S+GFGFV +S++++++KA+N
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 181 FSGYELDGRVLTVNKATPKEARPER 205
+G +LDGR + V++A EARP R
Sbjct: 318 LNGADLDGRQIRVSEA---EARPPR 339
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VGNL ++VD+A+L ++F GNVE ++ D+ TGRSRGFGFVTMS+ A++ A
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 283 DGQSLDGRTIRVSVA 297
+G +GR +RV+
Sbjct: 161 NGYEFEGRPLRVNAG 175
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 56/78 (71%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNL W VD LE +F E G V AR++ DR++GRS+GFGFVT+SS ++ AI +L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 283 DGQSLDGRTIRVSVAEGR 300
+G LDGR IRVS AE R
Sbjct: 340 NGADLDGRQIRVSEAEAR 357
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 66/116 (56%), Gaps = 24/116 (20%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S DLK+FVGNL ++V+S LA LFE AG+VE EVIY+K T +SRGFGFV MSTA ++E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEA 155
Query: 177 ALNKFSGY---------------------ELDGRVLTVNKATPKEARPE---RPPR 208
A +F+GY E +GR L VN P R E R PR
Sbjct: 156 AAQQFNGYVSRYLCSLLCLYLLIRVLCGLEFEGRPLRVNAGPPPPKREESFSRGPR 211
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 3/85 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL W V+ L LF E G V A VIY++ + +S+GFGFV +S++++++KA+N
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 181 FSGYELDGRVLTVNKATPKEARPER 205
+G +LDGR + V++A EARP R
Sbjct: 339 LNGADLDGRQIRVSEA---EARPPR 360
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSS 271
++VGNL ++VD+A+L ++F GNVE ++ D+ TGRSRGFGFVTMS+
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 95/198 (47%), Gaps = 9/198 (4%)
Query: 108 EEVVASAEPSED---LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFG 164
+ VV+ AEP + +++V N+P + L +F+ G+V EV N T +SRG G
Sbjct: 93 DSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSG 152
Query: 165 FVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXX---XXXXX 221
+V M + + A+ G E+ GR + V + R P
Sbjct: 153 YVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQH 212
Query: 222 XVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAA 281
VYVGNLPW L F + G + + R++ DR+TGR+R F F++ +S + + A+ +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-S 271
Query: 282 LDGQSLDGRTIRVSVAEG 299
+G +GR R+ V EG
Sbjct: 272 FNGTQYEGR--RIIVREG 287
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 10/199 (5%)
Query: 108 EEVVASAEPSED---LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVI-YNKATNQSRGF 163
+ VV+ AEP + +++V N+P + L +F+ G+V EV+ N T +SRG
Sbjct: 93 DSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGS 152
Query: 164 GFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXX---XXXX 220
G+V M + + A+ G E+ GR + V + R P
Sbjct: 153 GYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQ 212
Query: 221 XXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
VYVGNLPW L F + G + + R++ DR+TGR+R F F++ +S + + A+
Sbjct: 213 HKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL- 271
Query: 281 ALDGQSLDGRTIRVSVAEG 299
+ +G +GR R+ V EG
Sbjct: 272 SFNGTQYEGR--RIIVREG 288
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NLP ++ + L F + G + A V+ +++ N SR FGFV E A+ K
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKM 289
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXX---XXXXXXVYVGNLPWSVDTARLE 238
+G L VL V +A K R E R F +Y+ NL SVD +L+
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
E+F E+GNV +++++++ + G SRGFGFV S+ + A++ ++G+ + + + +++A+
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 299 GRSGGRSSF 307
+ R+
Sbjct: 409 RKEDRRAHL 417
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 17/198 (8%)
Query: 110 VVASAEPSEDL----KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGF 165
++++ +PS L IF+ NL ++++ L F G++ +V + T +S+G+GF
Sbjct: 122 MLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGF 180
Query: 166 VIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKE--ARPERPPRTFXXXXXXXXXXXXV 223
V E + A++K +G ++ + + V ++ AR E P V
Sbjct: 181 VQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTP---------TPRFTNV 231
Query: 224 YVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALD 283
YV NLP + L + F + G + +A +VM ++G SR FGFV A+ ++
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFGVISSA-VVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 284 GQSLDGRTIRVSVAEGRS 301
G SL + V A+ +S
Sbjct: 291 GISLGDDVLYVGRAQKKS 308
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 15/185 (8%)
Query: 110 VVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMS 169
VV + + + ++ G+L V +L LF+ +V V ++ +S G+ ++ S
Sbjct: 39 VVVADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFS 97
Query: 170 TAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLP 229
D +A+ + TP RP R + +++ NL
Sbjct: 98 NPNDAYRAMEALN-------------YTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLD 144
Query: 230 WSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDG 289
S+D L E F G + + ++ MD TGRS+G+GFV E AI L+G ++
Sbjct: 145 ASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMND 203
Query: 290 RTIRV 294
+ + V
Sbjct: 204 KQVFV 208
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 108 EEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVI 167
+E + E S+ +++ NL V+ E L +F E G+V ++V+ N SRGFGFV
Sbjct: 320 QERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVA 378
Query: 168 MSTAEDLEKALNKFSGYELDGRVLTVNKATPKEAR 202
S E+ +AL++ +G + + L + A KE R
Sbjct: 379 YSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W D + L++ F G V A ++ DRETGRSRGFGFV+ S E N AI +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 283 DGQSLDGRTIRVSVAEGRSGG-RSSF 307
DG+ L+GR IRV++A RS RSSF
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRSSF 122
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W + +L F G V A VI ++ T +SRGFGFV S + A+ +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
G EL+GR + VN AT + + P
Sbjct: 96 MDGKELNGRQIRVNLATERSSAP 118
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W D + L++ F G V A ++ DRETGRSRGFGFV+ S E N AI +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 283 DGQSLDGRTIRVSVAEGRSGG-RSSF 307
DG+ L+GR IRV++A RS RSSF
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRSSF 122
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W + +L F G V A VI ++ T +SRGFGFV S + A+ +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
G EL+GR + VN AT + + P
Sbjct: 96 MDGKELNGRQIRVNLATERSSAP 118
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 15/186 (8%)
Query: 113 SAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAE 172
SAE ++D ++VG L + E L LF +AG V V ++ TN + +GF+ + E
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 173 DLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
D + A+ + +L G+ + VNKA+ + +++GNL V
Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNKASQDK--------------KSLDVGANLFIGNLDPDV 123
Query: 233 DTARLEEIFREHGNV-ENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRT 291
D L + F G + N +I+ D +TG SRGFGF++ S + AI ++ GQ L R
Sbjct: 124 DEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQ 183
Query: 292 IRVSVA 297
I VS A
Sbjct: 184 ITVSYA 189
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 5/180 (2%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NLP ++ + L F + G + A V+ +++ N SR FGFV + E A+ K
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 299
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXX---XXXXXXVYVGNLPWSVDTARLE 238
+G L VL V +A K R E R F +Y+ NL SV+ +L+
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
E+F E+GNV + +++M+ + G SRGFGFV S+ + A+ ++G+ + + + V++A+
Sbjct: 360 EMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 418
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+F+ NL ++++ L F G++ +V + +S+G+GFV E + A++K
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G L+ + + V ++ R VYV NLP + L++ F
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRAR-------SESGAVPSFTNVYVKNLPKEITDDELKKTF 259
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
++G++ +A +VM ++G SR FGFV S A+ ++G SL + V A+ +S
Sbjct: 260 GKYGDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKS 318
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 5/180 (2%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NLP ++ + L F + G + A V+ +++ N SR FGFV + E A+ K
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKM 299
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXX---XXXXXXVYVGNLPWSVDTARLE 238
+G L VL V +A K R E R F +Y+ NL SV+ +L+
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 359
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
E+F E+GNV + +++M+ + G SRGFGFV S+ + A+ ++G+ + + + V++A+
Sbjct: 360 EMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 418
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+F+ NL ++++ L F G++ +V + +S+G+GFV E + A++K
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G L+ + + V ++ R VYV NLP + L++ F
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRAR-------SESGAVPSFTNVYVKNLPKEITDDELKKTF 259
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
++G++ +A +VM ++G SR FGFV S A+ ++G SL + V A+ +S
Sbjct: 260 GKYGDISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKS 318
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 24/184 (13%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + V+ L F + G + +VI NK T Q G+GF+ + E+ L +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 182 SGYELDGRVLT--VNKAT-----PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
+G ++ G LT +N A+ +A P+ ++VG+L V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDH----------------SIFVGDLAPDVTD 129
Query: 235 ARLEEIFREH-GNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIR 293
L+E FR H +V A++V D TGRS+G+GFV + E++ N A+A ++G R +R
Sbjct: 130 YLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMR 189
Query: 294 VSVA 297
+S A
Sbjct: 190 ISAA 193
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 119 DLKIFVGNLPWDVESENLAMLFE-EAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
D IFVG+L DV L F SV A+V+ + +T +S+G+GFV + + +A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 178 LNKFSGYELDGRVLTVNKATPKE---------------ARPERPPRTFXXXXXXXXXXXX 222
+ + +G R + ++ ATPK+ + P + +
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTT 234
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+ V NL +V L++ F + G V +I ++G+G+V + A+ +
Sbjct: 235 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPA------TKGYGYVQFKTRPSAEEAVQRM 288
Query: 283 DGQSLDGRTIRVS 295
GQ + + +R+S
Sbjct: 289 QGQVIGQQAVRIS 301
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 24/184 (13%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + V+ L F + G + +VI NK T Q G+GF+ + E+ L +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 182 SGYELDGRVLT--VNKAT-----PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
+G ++ G LT +N A+ +A P+ ++VG+L V
Sbjct: 86 NGTQMPGTELTFRLNWASFGSGQKVDAGPDH----------------SIFVGDLAPDVTD 129
Query: 235 ARLEEIFREH-GNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIR 293
L+E FR H +V A++V D TGRS+G+GFV + E++ N A+A ++G R +R
Sbjct: 130 YLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMR 189
Query: 294 VSVA 297
+S A
Sbjct: 190 ISAA 193
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 83/197 (42%), Gaps = 26/197 (13%)
Query: 119 DLKIFVGNLPWDVESENLAMLFE-EAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
D IFVG+L DV L F SV A+V+ + +T +S+G+GFV + + +A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 178 LNKFSGYELDGRVLTVNKATPKE-------------------ARPERPPRTFXXXXXXXX 218
+ + +G R + ++ ATPK+ + P + +
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDV 234
Query: 219 XXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGA 278
+ V NL +V L++ F + G V +I ++G+G+V + A
Sbjct: 235 TCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPA------TKGYGYVQFKTRPSAEEA 288
Query: 279 IAALDGQSLDGRTIRVS 295
+ + GQ + + +R+S
Sbjct: 289 VQRMQGQVIGQQAVRIS 305
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 96/210 (45%), Gaps = 32/210 (15%)
Query: 108 EEVVASAEPSEDL-------------------KIFVGNLPWDVESENLAMLFEEAGSVEF 148
E+ + +PSED+ KIFVG L + S F + G +
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITD 70
Query: 149 AEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPR 208
+ ++ ++ T Q RGFGFV + + ++K + + + G+ + + + P+ + +
Sbjct: 71 SVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ--DNHIIIGKQVEIKRTIPRGSMSSNDFK 128
Query: 209 TFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVT 268
T ++VG +P SVD +E F + G ++ +I+ D TGRSRGFGFVT
Sbjct: 129 T-----------KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVT 177
Query: 269 MSSEADINGAIAALDGQSLDGRTIRVSVAE 298
SE ++ +A + L G + + AE
Sbjct: 178 YESEDMVDHLLAKGNRIELSGTQVEIKKAE 207
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG +P V+ + F + G ++ +++ + +T +SRGFGFV + + ++ L K
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 181 FSGYELDGRVLTVNKATPKE 200
+ EL G + + KA PK+
Sbjct: 191 GNRIELSGTQVEIKKAEPKK 210
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 8/182 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + E L F G V A ++ ++AT ++RGFGF++ + E+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 181 FSGYELDGRVLTVNKATPKE-----ARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+ +DGR + KA P++ R P ++VG LP S+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
+ F + G + + ++ D T R RGFGF+T S+ ++ + L+G+ + V
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTF-HELNGKLVEVK 183
Query: 296 VA 297
A
Sbjct: 184 RA 185
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + E F++ G++ V+Y+ T + RGFGF+ + + +++ L+K
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ +EL+G+++ V +A PKE P
Sbjct: 171 -TFHELNGKLVEVKRAVPKEISP 192
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 8/182 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + E L F G V A ++ ++AT ++RGFGF++ + E+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 181 FSGYELDGRVLTVNKATPKE-----ARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+ +DGR + KA P++ R P ++VG LP S+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
+ F + G + + ++ D T R RGFGF+T S+ ++ + L+G+ + V
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTF-HELNGKLVEVK 183
Query: 296 VA 297
A
Sbjct: 184 RA 185
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + E F++ G++ V+Y+ T + RGFGF+ + + +++ L+K
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ +EL+G+++ V +A PKE P
Sbjct: 171 -TFHELNGKLVEVKRAVPKEISP 192
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 115 EPSEDL-KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAED 173
E + DL K+F+G + WD + E L F + G + A ++ ++ T ++RGFGF++ +
Sbjct: 6 ESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSV 65
Query: 174 LEKALNKFSGYELDGRVLTVNKATPKE--------ARPERPPRTFXXXXXXXXXXXXVYV 225
E+ + + +DGR + KA P++ A P ++V
Sbjct: 66 AERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFV 123
Query: 226 GNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ 285
G LP S+ A + F + G + + ++ D T R RGFGF+T SE ++ +
Sbjct: 124 GGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD-MVLHKTFH 182
Query: 286 SLDGRTIRVSVA 297
L+G+ + V A
Sbjct: 183 ELNGKMVEVKRA 194
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + F++ G++ V+Y+ T + RGFGF+ + E ++ L+K
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 179
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRT 209
+ +EL+G+++ V +A PKE P R+
Sbjct: 180 -TFHELNGKMVEVKRAVPKELSSTTPNRS 207
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 115 EPSEDL-KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAED 173
E + DL K+F+G + WD + E L F + G + A ++ ++ T ++RGFGF++ +
Sbjct: 9 ESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSV 68
Query: 174 LEKALNKFSGYELDGRVLTVNKATPKE--------ARPERPPRTFXXXXXXXXXXXXVYV 225
E+ + + +DGR + KA P++ A P ++V
Sbjct: 69 AERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFV 126
Query: 226 GNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ 285
G LP S+ A + F + G + + ++ D T R RGFGF+T SE ++ +
Sbjct: 127 GGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD-MVLHKTFH 185
Query: 286 SLDGRTIRVSVA 297
L+G+ + V A
Sbjct: 186 ELNGKMVEVKRA 197
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + F++ G++ V+Y+ T + RGFGF+ + E ++ L+K
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRT 209
+ +EL+G+++ V +A PKE P R+
Sbjct: 183 -TFHELNGKMVEVKRAVPKELSSTTPNRS 210
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + E L F G V A ++ ++AT ++RGFGF++ + E+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 181 FSGYELDGRVLTVNKATPKE-----ARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+ +DGR + KA P++ R P ++VG LP S+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
+ F + G + + ++ D T R RGFGF+T S+
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSD 161
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + E F++ G++ V+Y+ T + RGFGF+ + + +++ L+K
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ +EL+G+++ V +A PKE P
Sbjct: 171 -TFHELNGKLVEVKRAVPKEISP 192
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W D RL + F +G+V A I+ DR TGR+RGFGF+ + I +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 283 DGQSLDGRTIRVSVA 297
D +DGRT+ A
Sbjct: 66 DKHIIDGRTVEAKKA 80
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + WD + E L F G V A ++ ++AT ++RGFGF++ + E+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 181 FSGYELDGRVLTVNKATPKE-----ARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
+ +DGR + KA P++ R P ++VG LP S+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEE 124
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
+ F + G + + ++ D T R RGFGF+T S+
Sbjct: 125 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSD 161
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + E F++ G++ V+Y+ T + RGFGF+ + + +++ L+K
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ +EL+G+++ V +A PKE P
Sbjct: 171 -TFHELNGKLVEVKRAVPKEISP 192
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W D RL + F +G+V A I+ DR TGR+RGFGF+ + I +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI--M 65
Query: 283 DGQSLDGRTIRVSVA 297
D +DGRT+ A
Sbjct: 66 DKHIIDGRTVEAKKA 80
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 55/79 (69%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + +S+D L E F ++G V + R+++DRETGRSRGFGFVT +S + AI AL
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 283 DGQSLDGRTIRVSVAEGRS 301
DG+ L GR ++V+ A R+
Sbjct: 102 DGRDLHGRVVKVNYANDRT 120
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G + + ++ ++L F + G V VI ++ T +SRGFGFV +++E A+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 181 FSGYELDGRVLTVNKATPK 199
G +L GRV+ VN A +
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ D LE F ++G+V +++I+ DRETGRSRGFGFVT E + AI +
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 283 DGQSLDGRTIRVSVAE 298
+GQ LDGR+I V+ A+
Sbjct: 70 NGQDLDGRSITVNEAQ 85
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+ FVG L W + L F + G V +++I ++ T +SRGFGFV + ++ A+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 181 FSGYELDGRVLTVNKA 196
+G +LDGR +TVN+A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ D LE F ++G+V +++I+ DRETGRSRGFGFVT E + AI +
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 283 DGQSLDGRTIRVSVAE 298
+GQ LDGR+I V+ A+
Sbjct: 70 NGQDLDGRSITVNEAQ 85
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+ FVG L W + L F + G V +++I ++ T +SRGFGFV + ++ A+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 181 FSGYELDGRVLTVNKA 196
+G +LDGR +TVN+A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G L W D A L + F G+V +A++++DRETGRSRGFGFV + E AI+ +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 283 DGQSLDGRTIRVSVAEGR 300
DG+ L+GR IRV+ A R
Sbjct: 97 DGKELNGRHIRVNPANDR 114
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G L W + +L F G V A+VI ++ T +SRGFGFV + A+++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 181 FSGYELDGRVLTVNKATPKEARPERP 206
G EL+GR + VN P RP P
Sbjct: 96 MDGKELNGRHIRVN---PANDRPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G L W D A L + F G+V +A++++DRETGRSRGFGFV + E AI+ +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 283 DGQSLDGRTIRVSVAEGR 300
DG+ L+GR IRV+ A R
Sbjct: 97 DGKELNGRHIRVNPANDR 114
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G L W + +L F G V A+VI ++ T +SRGFGFV + A+++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 181 FSGYELDGRVLTVNKATPKEARPERP 206
G EL+GR + VN P RP P
Sbjct: 96 MDGKELNGRHIRVN---PANDRPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G L W D A L + F G+V +A++++DRETGRSRGFGFV + E AI+ +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 283 DGQSLDGRTIRVSVAEGR 300
DG+ L+GR IRV+ A R
Sbjct: 97 DGKELNGRHIRVNPANDR 114
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G L W + +L F G V A+VI ++ T +SRGFGFV + A+++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 181 FSGYELDGRVLTVNKATPKEARPERP 206
G EL+GR + VN P RP P
Sbjct: 96 MDGKELNGRHIRVN---PANDRPSAP 118
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G L W D A L + F G+V +A++++DRETGRSRGFGFV + E AI+ +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 283 DGQSLDGRTIRVSVAEGR 300
DG+ L+GR IRV+ A R
Sbjct: 97 DGKELNGRHIRVNPANDR 114
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G L W + +L F G V A+VI ++ T +SRGFGFV + A+++
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
G EL+GR + VN P RP
Sbjct: 96 MDGKELNGRHIRVN---PANDRP 115
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S++ K+F+G + WD E L F G V A ++ ++ T ++RGFGFV+ + E
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 177 ALNKFSGYELDGRVLTVNKATPK--------------EARPERPPRTFXXXXXXXXXXXX 222
+ + + +DGR++ KA P+ + P P RT
Sbjct: 63 VITEK--HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT-----------RK 109
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
++VG LP SV + + F + G + ++ D T R RGFGF+T SE
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P KIFVG LP V + FE+ G+ V+Y+ T + RGFGF+ + E +E
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARP 203
K L K + +EL+G+++ V +A PKE P
Sbjct: 164 KVLLK-TFHELNGKMVEVKRAVPKELSP 190
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W + RL+E F G V A I+ DR TGR+RGFGFV + A I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA--EIVIT 65
Query: 283 DGQSLDGRTIRVSVA 297
+ ++DGR + A
Sbjct: 66 EKHNIDGRLVEAKKA 80
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S++ K+F+G + WD E L F G V A ++ ++ T ++RGFGFV+ + E
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 177 ALNKFSGYELDGRVLTVNKATPK--------------EARPERPPRTFXXXXXXXXXXXX 222
+ + + +DGR++ KA P+ + P P RT
Sbjct: 63 VITEK--HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRT-----------RK 109
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
++VG LP SV + + F + G + ++ D T R RGFGF+T SE
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSE 159
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P KIFVG LP V + FE+ G+ V+Y+ T + RGFGF+ + E +E
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARP 203
K L K + +EL+G+++ V +A PKE P
Sbjct: 164 KVLLK-TFHELNGKMVEVKRAVPKELSP 190
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G + W + RL+E F G V A I+ DR TGR+RGFGFV + A I
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA--EIVIT 65
Query: 283 DGQSLDGRTIRVSVA 297
+ ++DGR + A
Sbjct: 66 EKHNIDGRLVEAKKA 80
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+ V +PWD++S+ L + G +E V+ +++T +SRGFG+V ++AED + AL
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK- 62
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ L R+L V ATPKE R P ++V +P SV +
Sbjct: 63 -GEHFLGNRILEVKVATPKEEM--RQP---------AKKVTRIFVARIPSSVSESDFRSH 110
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
F +G + + + D + + RG GF+T SS + + D L G T+ V A
Sbjct: 111 FERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME--DTHDLGGTTVAVDRA 165
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 111 VASAEPSEDLK--------IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRG 162
V A P E+++ IFV +P V + FE G + + + + Q RG
Sbjct: 74 VKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRG 133
Query: 163 FGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKE-ARPERPP 207
GF+ S+A+ +E + ++L G + V++ATPKE P RPP
Sbjct: 134 IGFITFSSADSVEDLME--DTHDLGGTTVAVDRATPKEDDHPPRPP 177
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+ V +PWD++S+ L + G +E V+ +++T +SRGFG+V ++AED + AL
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK- 62
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ L R+L V ATPKE R P ++V +P SV +
Sbjct: 63 -GEHFLGNRILEVKVATPKEEM--RQP---------AKKVTRIFVARIPSSVSESDFRSH 110
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
F +G + + + D + + RG GF+T SS + + D L G T+ V A
Sbjct: 111 FERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME--DTHDLGGTTVAVDRA 165
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 111 VASAEPSEDLK--------IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRG 162
V A P E+++ IFV +P V + FE G + + + + Q RG
Sbjct: 74 VKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRG 133
Query: 163 FGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKE-ARPERPP 207
GF+ S+A+ +E + ++L G + V++ATPKE P RPP
Sbjct: 134 IGFITFSSADSVEDLME--DTHDLGGTTVAVDRATPKEDDHPPRPP 177
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 10/186 (5%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG + W+ +E A F + G V + ++ ++ T RGFGFV + + EK L +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ +D R + + + P+ + ++VG LP ++ L+
Sbjct: 127 --DHVIDDRKVDLKRTLPRGDK--------DTDIKAVSKTRKIFVGGLPPLLEEDELKNY 176
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGR 300
F +G++ +I+ D TGRSRGFGFVT +E ++ + L + + + AE +
Sbjct: 177 FCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Query: 301 SGGRSS 306
GR +
Sbjct: 237 RTGRDN 242
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP +E + L F G + +++Y+ T +SRGFGFV T + +++ +
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTF 210
+EL + + + +A PK + R++
Sbjct: 218 GKVHELGDKQVEIKRAEPKRTGRDNSFRSY 247
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 4/181 (2%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E K+F+G + W+ + L F G V A ++ ++AT ++RGFGFV+ + E+
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPE-RPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
+ + +DG+++ KA P++ + ++VG L SV A
Sbjct: 64 V--LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
++ F + G + + ++ D T R RGFGF++ SE ++ + L+G+ + V +
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTF-HELNGKMVEVKL 180
Query: 297 A 297
A
Sbjct: 181 A 181
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 112 ASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTA 171
S PS KIFVG L V F + G + V+Y+ T + RGFGF+ +
Sbjct: 98 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Query: 172 EDLEKALNKFSGYELDGRVLTVNKATPKE 200
E ++K L K + +EL+G+++ V A PK+
Sbjct: 158 EAVDKVLQK-TFHELNGKMVEVKLAVPKD 185
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 4/181 (2%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E K+F+G + W+ + L F G V A ++ ++AT ++RGFGFV+ + E+
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPE-RPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
+ + +DG+++ KA P++ + ++VG L SV A
Sbjct: 64 V--LLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAE 121
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
++ F + G + + ++ D T R RGFGF++ SE ++ + L+G+ + V +
Sbjct: 122 FKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTF-HELNGKMVEVKL 180
Query: 297 A 297
A
Sbjct: 181 A 181
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 112 ASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTA 171
S PS KIFVG L V F + G + V+Y+ T + RGFGF+ +
Sbjct: 98 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Query: 172 EDLEKALNKFSGYELDGRVLTVNKATPKE 200
E ++K L K + +EL+G+++ V A PK+
Sbjct: 158 EAVDKVLQK-TFHELNGKMVEVKLAVPKD 185
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 6/183 (3%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL +L LF E G + A V+ +SR FGFV AE A+ K
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSA-VVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXX----XXXXXXXXVYVGNLPWSVDTARL 237
+G +D + L V +A K R E F +YV NL SVD +L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVA 297
EE+F E G + + + VM G S+G GFV S+ + + A+ ++G+ + + I VS+A
Sbjct: 240 EELFSEFGTITSCK-VMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLA 298
Query: 298 EGR 300
+ +
Sbjct: 299 QCK 301
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 16/181 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+FV NL ++++ L +F G V +V + A+ S+G+GFV + + A N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 182 SGYELDGRVLTVNKATPKEARPE-RPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+G + + + V P +R + R F VYV NL + A L+ +
Sbjct: 92 NGTLIRNQHIHV---CPFVSRGQWDKSRVFTN----------VYVKNLVETATDADLKRL 138
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGR 300
F E G + +A ++ D E G+SR FGFV AI ++G +D + + V A+ +
Sbjct: 139 FGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRK 197
Query: 301 S 301
+
Sbjct: 198 T 198
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S+ K+F+G + WD + L F G V V+ KAT + RGFGFV S +++
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDR 62
Query: 177 ALNKFSGYELDGRVLTVNKATPKEAR-PERPPRTFXXX----XXXXXXXXXVYVGNLPWS 231
L + +D R + V +A +E + P TF ++VG LP +
Sbjct: 63 VLQDK--HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 232 VDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADIN 276
+ + F +G V +A I++D+ T R RGFGFV+ SE ++
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVD 165
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + S+ FE G V A ++ ++ T + RGFGFV + + ++ L+K
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ ++L+G+ + V +A PK+A P
Sbjct: 171 -TFHDLNGKQVEVKRALPKDANP 192
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 23/201 (11%)
Query: 111 VASAEP--SEDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVI 167
+ S P + D+K +++G+L ++ + +F ++G A+VI NK T QS G+GF+
Sbjct: 48 IGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIE 107
Query: 168 MSTAEDLEKALNKFSGYELDGRVLTVN------KATPKEARPERPPRTFXXXXXXXXXXX 221
+ E+ L ++G + T A K + E P T
Sbjct: 108 FVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT------------ 155
Query: 222 XVYVGNLPWSVDTARLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
++VG+L V L + F+ +G+V+ A++V+DR TGRS+G+GFV + E + A+
Sbjct: 156 -IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 281 ALDGQSLDGRTIRVSVAEGRS 301
++GQ R +R+ A ++
Sbjct: 215 EMNGQYCSTRPMRIGPAANKN 235
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 13/193 (6%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEA-GSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
D IFVG+L +V L+ F+ GSV+ A+V+ ++ T +S+G+GFV + + +A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXX----XXXXVYVGNLPWSVD 233
+ + +G R + + A K A P +P ++VG L +V
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 234 TARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIR 293
L+ IF + G + + +I + GFV +++A A++ L+G L G++IR
Sbjct: 273 DDELKSIFGQFGELLHVKIPPGKRC------GFVQYANKASAEHALSVLNGTQLGGQSIR 326
Query: 294 VSVAEGRSGGRSS 306
+S GRS + S
Sbjct: 327 LSW--GRSPNKQS 337
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 8/186 (4%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S+ K+FVG + W+ + + L F G V A V+ +K T + RGFGFVI S L++
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 177 ALNKFSGYELDGRVLTVNKATPKE-----ARPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
L + + +D R + V +A +E R + ++VG LP +
Sbjct: 63 VLQEK--HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 232 VDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRT 291
+ + F +G V + I+ D+ T R RGFGFV+ SE ++ ++ L G+
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVD-SVLHKTFHDLSGKQ 179
Query: 292 IRVSVA 297
+ V A
Sbjct: 180 VEVKRA 185
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG LP + E FE G V ++Y++ATN+ RGFGFV + + ++ L+K
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ ++L G+ + V +A PK+A P
Sbjct: 171 -TFHDLSGKQVEVKRALPKDANP 192
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG+L ++V L F E V V + ATN S G+G+V S +D EKA+ K
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+ L+G+++ + ++ ++V NL SVD L E F
Sbjct: 108 NYSYLNGKMIRITYSS-------------RDSSARRSGVGNLFVKNLDKSVDNKTLHEAF 154
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
G + + ++ D G+SRG+GFV +E AI L+G+ L+ + I V
Sbjct: 155 SGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 93/194 (47%), Gaps = 5/194 (2%)
Query: 108 EEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVI 167
EE ++A+ + ++V NL + L F + GS+ A V+ +SR FGFV
Sbjct: 213 EERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSA-VVMRDGDGKSRCFGFVN 271
Query: 168 MSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXX---XXVY 224
ED +A+ +G + D + V KA K R R + +Y
Sbjct: 272 FENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLY 331
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
V NL +V +L E+F E G + + +++ D +G S+G GFV S+ ++ + + ++G
Sbjct: 332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMNG 390
Query: 285 QSLDGRTIRVSVAE 298
+ + G+ + V++A+
Sbjct: 391 KMVGGKPLYVALAQ 404
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+FV NL V+++ L F G++ +V + QSRG+GFV T + + A+ K
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G L+ + + V KE R VYV NL + L+ F
Sbjct: 195 NGKVLNDKQIFVGPFLRKEER---------ESAADKMKFTNVYVKNLSEATTDDELKTTF 245
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
++G++ +A +VM G+SR FGFV + D A+ AL+G+ D + V A+ +S
Sbjct: 246 GQYGSISSA-VVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKS 304
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVG+L ++V ++L + F E V + R+ D T S G+G+V S+ D A+ L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 283 DGQSLDGRTIRVS 295
+ L+G+ IR++
Sbjct: 108 NYSYLNGKMIRIT 120
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+ L D +E L LF G +E A VI +K T +S+G+GFV + AL +
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
S ++DGRV A +YV N+P+ + RL
Sbjct: 136 PS-KKIDGRVTVTQLAASGN--------QGTGSQIADISMRKIYVANVPFDMPADRLLNH 186
Query: 241 FREHGNVENARIVMDRETGRSRGFG-FVTMSSEADINGAIAALDG--QSLDGRTIRVSVA 297
F +G+VE + D+ TG+SRGF FV ++E GA AAL + +DG+ + +A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAE----GAQAALADPVKVIDGKHLNCKLA 242
Query: 298 -EGRSGGR 304
+G+ GG+
Sbjct: 243 VDGKKGGK 250
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+ L D +E L LF G +E A VI +K T +S+G+GFV + AL +
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
S ++DGRV A +YV N+P+ + RL
Sbjct: 136 PS-KKIDGRVTVTQLAASGN--------QGTGSQIADISMRKIYVANVPFDMPADRLLNH 186
Query: 241 FREHGNVENARIVMDRETGRSRGFG-FVTMSSEADINGAIAALDG--QSLDGRTIRVSVA 297
F +G+VE + D+ TG+SRGF FV ++E GA AAL + +DG+ + +A
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAE----GAQAALADPVKVIDGKHLNCKLA 242
Query: 298 -EGRSGGR 304
+G+ GG+
Sbjct: 243 VDGKKGGK 250
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG + +S D L E F ++G V +A+I++DRETGRSRGF FVT +S + + A+ L
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 283 DGQSLDGRTIRVSVA 297
DGQ L GR IRV+ A
Sbjct: 95 DGQDLHGRRIRVNYA 109
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG + + + L F + G V A++I ++ T +SRGF FV ++ E+ A+ +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 181 FSGYELDGRVLTVNKAT 197
G +L GR + VN AT
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIF+G L D + F + G + + ++ ++ T Q RGFGF+ + ++K +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ ++G+ + + + PK A ++VG +P +V L++
Sbjct: 80 T--HVINGKQVEIKRTIPKGA---------GGNQSKDIKTKKIFVGGIPSTVTEDELKDF 128
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSE 272
F ++GNV +++ D ET RSRGFGFV SE
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 112 ASAEPSEDLK---IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIM 168
A S+D+K IFVG +P V + L F + G+V +VI + TN+SRGFGFVI
Sbjct: 98 AGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Query: 169 STAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPP 207
+ E +++ L+K + ++ + + KA PK++ PP
Sbjct: 158 DSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPP 196
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ + L+ F + G+V +++I+ DRE+GRSRGFGFVT E + AI +
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 283 DGQSLDGRTIRVSVAEGRSGG 303
+G+ LDGR I V+ A+ R G
Sbjct: 68 NGKELDGRVITVNEAQSRGSG 88
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ + FVG L W E+L F + G V +++I ++ + +SRGFGFV + + A+
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 179 NKFSGYELDGRVLTVNKATPK 199
+ +G ELDGRV+TVN+A +
Sbjct: 65 EEMNGKELDGRVITVNEAQSR 85
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIF+G L D + F + G + + ++ ++ T Q RGFGF+ + ++K +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE- 78
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
+ ++G+ + + + PK A + ++VG +P +V L++
Sbjct: 79 -DTHVINGKQVEIKRTIPKGAGGNQSKDI---------KTKKIFVGGIPSTVTEDELKDF 128
Query: 241 FREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
F ++GNV +++ D ET RSRGFGFV SE ++ ++ G +D +VS+ +
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK--GNMIDMADTQVSLYK 184
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG+L V L F +AG V V + T +S G+G+V +T +D +ALN+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+ L+GR + V + R P +++ NL S+D L E F
Sbjct: 107 NFMALNGRAIRVMYSV-------RDP------SLRKSGVGNIFIKNLDKSIDHKALHETF 153
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
G + + ++ +D +G+S+G+GFV ++ GAI L+G L+ + + V
Sbjct: 154 SAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
IF+ NL ++ + L F G + +V + + QS+G+GFV T E + A++K
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G L+ + + V P + +R P VYV NL S+ L ++F
Sbjct: 194 NGMLLNDKQVYVG---PFVHKLQRDP------SGEKVKFTNVYVKNLSESLSDEELNKVF 244
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
E G + I+ D E G+S+GFGFV + D A+ AL+G++ D + V A+ +S
Sbjct: 245 GEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKS 303
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL + E L +F E G V + VI +S+GFGFV ++D +A++
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXX---VYVGNLPWSVDTARLE 238
+G D + V KA K R + F +YV NL SV +L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
E F G + + +++ D +G SRG GFV S+ + AI ++G+ + + + V++A+
Sbjct: 345 EHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG+L V L F +AG V V + T +S G+G+V +T +D +ALN+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+ L+GR + V + R P +++ NL S+D L E F
Sbjct: 107 NFMALNGRAIRVMYSV-------RDP------SLRKSGVGNIFIKNLDKSIDHKALHETF 153
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
G + + ++ +D +G+S+G+GFV ++ GAI L+G L+ + + V
Sbjct: 154 SAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
IF+ NL ++ + L F G + +V + + QS+G+GFV T E + A++K
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G L+ + + V P + +R P VYV NL S+ L ++F
Sbjct: 194 NGMLLNDKQVYVG---PFVHKLQRDP------SGEKVKFTNVYVKNLSESLSDEELNKVF 244
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
E G + I+ D E G+S+GFGFV + D A+ AL+G++ D + V A+ +S
Sbjct: 245 GEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKS 303
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V NL + E L +F E G V + VI +S+GFGFV ++D +A++
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXX---VYVGNLPWSVDTARLE 238
+G D + V KA K R + F +YV NL SV +L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
E F G + + +++ D +G SRG GFV S+ + AI ++G+ + + + V++A+
Sbjct: 345 EHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + ++ L F G + A+VI NK T Q G+GF+ ++ E+ L F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 182 SGYELDG---RVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
+ + ++ +N A+ + R + P T ++VG+L V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT-------------IFVGDLAADVTDYI 170
Query: 237 LEEIFR-EHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
L E FR + +V+ A++V+DR TGR++G+GFV S E++ A+ ++G R +R+
Sbjct: 171 LLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIG 230
Query: 296 VA---EGRSGGRSSF 307
A +G +G R S+
Sbjct: 231 PAASKKGVTGQRDSY 245
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 16/183 (8%)
Query: 115 EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+PS ++VGN+ V L +F G VE +++I ++ +GFV
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSA 109
Query: 175 EKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
A+ +G L G+ + VN A R + ++VG+L V
Sbjct: 110 ALAILSLNGRHLFGQPIKVNWAYATGQRED------------TSSHFNIFVGDLSPEVTD 157
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
A L + F + +AR++ D++TGRSRGFGFV+ ++ D AI ++G+ L R IR
Sbjct: 158 ATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRC 217
Query: 295 SVA 297
+ A
Sbjct: 218 NWA 220
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ + L+ F + G+V +++I+ DRE+GRSRGFGFVT E + AI +
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 283 DGQSLDGRTIRVSVAE 298
+G+ LDGR I V+ A+
Sbjct: 68 NGKELDGRVITVNEAQ 83
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ + FVG L W E+L F + G V +++I ++ + +SRGFGFV + + A+
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 179 NKFSGYELDGRVLTVNKA 196
+ +G ELDGRV+TVN+A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ + L+ F + G+V +++I+ DRE+GRSRGFGFVT E + AI +
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 283 DGQSLDGRTIRVSVAE 298
+G+ LDGR I V+ A+
Sbjct: 68 NGKELDGRVITVNEAQ 83
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ + FVG L W E+L F + G V +++I ++ + +SRGFGFV + + A+
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 179 NKFSGYELDGRVLTVNKA 196
+ +G ELDGRV+TVN+A
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 22/195 (11%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++G+L + ++ L F G + A+VI NK T Q G+GF+ ++ E+ L F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 182 SGYELDG---RVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
+ + ++ +N A+ + R + P T ++VG+L V
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT-------------IFVGDLAADVTDYI 170
Query: 237 LEEIFR-EHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
L E FR + +V+ A++V+DR TGR++G+GFV S E++ A+ ++G R +R+
Sbjct: 171 LLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIG 230
Query: 296 VA---EGRSGGRSSF 307
A +G +G R S+
Sbjct: 231 PAASKKGVTGQRDSY 245
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 11/184 (5%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEA-GSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
S D IFVG+L DV L F + SV+ A+V+ ++ T +++G+GFV S +
Sbjct: 152 SPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Query: 176 KALNKFSGYELDGRVLTVNKATPKEA----RPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
+A+ + +G R + + A K+ R V+VG L S
Sbjct: 212 RAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDAS 271
Query: 232 VDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRT 291
V L+ +F ++G + + +I + G FV S ++ A+ L+G L G T
Sbjct: 272 VTDDHLKNVFSQYGEIVHVKIPAGKRCG------FVQFSEKSCAEEALRMLNGVQLGGTT 325
Query: 292 IRVS 295
+R+S
Sbjct: 326 VRLS 329
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 19/187 (10%)
Query: 118 EDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
+D+K ++VG+L ++ L F G V +VI NK T+QS G+GFV + E+
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 177 ALNKFSGYELDG-----RVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
L +SG + R+ + +T ++ E P V+VG+L
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGP------------DLSVFVGDLSPD 212
Query: 232 VDTARLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
V L E F + + +V++A++V+D TGRS+G+GFV E + + A+ ++G R
Sbjct: 213 VTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNR 272
Query: 291 TIRVSVA 297
+RV +A
Sbjct: 273 QMRVGIA 279
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 24/201 (11%)
Query: 113 SAEPSEDLKIFVGNLPWDVESENLAMLF-EEAGSVEFAEVIYNKATNQSRGFGFVIMSTA 171
+ E DL +FVG+L DV L F + SV+ A+V+ + T +S+G+GFV
Sbjct: 195 AVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Query: 172 EDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRT-----------------FXXXX 214
+ +AL + +G R + V ATPK A + + +
Sbjct: 255 NERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQS 314
Query: 215 XXXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEAD 274
++VG + V L + F + G V + +I + +G GFV +
Sbjct: 315 DGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKS 368
Query: 275 INGAIAALDGQSLDGRTIRVS 295
AI +L+G + T+R+S
Sbjct: 369 AEDAIESLNGTVIGKNTVRLS 389
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G L WSVD L++ F G V RI D+ +GRSRGFGFV + E D A A+
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 283 DGQSLDGRTIRVSVA 297
DG+ L GR +R+S A
Sbjct: 103 DGKGLLGRPLRISFA 117
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G L W V+ ++L F G V + Y+K + +SRGFGFV + D A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 181 FSGYELDGRVLTVNKATPK 199
G L GR L ++ A +
Sbjct: 102 MDGKGLLGRPLRISFALER 120
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
IF+ NL ++ + L F G++ +V + ++ QS+G+GFV + E +KA+ K
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+G L+ + + V ++ R +T VYV NL S L+ F
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKT---------KFTNVYVKNLAESTTDDDLKNAF 235
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAEGRS 301
E+G + +A ++ D E G+S+GFGFV + D A+ +L+G D + V A+ +S
Sbjct: 236 GEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKS 294
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 5/194 (2%)
Query: 108 EEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVI 167
+E ++A ++ ++V NL ++L F E G + A V+ +S+GFGFV
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVN 261
Query: 168 MSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXX---XXXXVY 224
A+D +A+ +G++ D + V +A K R + +Y
Sbjct: 262 FENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLY 321
Query: 225 VGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
V NL S+ +L+EIF G V +++++ D G S+G GFV ++ + A++ L G
Sbjct: 322 VKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSG 380
Query: 285 QSLDGRTIRVSVAE 298
+ ++ + + V++A+
Sbjct: 381 KMIESKPLYVAIAQ 394
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 18/200 (9%)
Query: 95 TWANEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYN 154
T A + T GG A+A + ++VG+L ++V L F + G+V V +
Sbjct: 15 TAAVTSAPATSGG----ATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRD 70
Query: 155 KATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXX 214
T +S G+G+V + +D +A+ + + L G+ + V + R P
Sbjct: 71 LVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS-------HRDPSV----- 118
Query: 215 XXXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEAD 274
+++ NL S+D L + F GN+ + ++ +D +G+S+G+GFV ++E
Sbjct: 119 -RRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEES 176
Query: 275 INGAIAALDGQSLDGRTIRV 294
AI L+G L+ + + V
Sbjct: 177 AQKAIEKLNGMLLNDKQVYV 196
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 7/176 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
++ N+PW E++ LFE+ GSV E+ +K ++RG F+ M++ E+ AL
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKK-ERNRGLVFIEMASPEEAATALKS 153
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
E +GR L V+ A K+ + P T ++V NL + L+E
Sbjct: 154 LESCEYEGRRLKVDYAKTKKKKTYAPRET-----PSPVPTFNLFVANLAFEARAKHLKEF 208
Query: 241 F-REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
F + GNV + ++ RS G+GFV+ ++ A+ G+ GR IR++
Sbjct: 209 FDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 264
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFE-EAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
P +FV NL ++ +++L F+ + G+V EVI+++ +S G+GFV T +
Sbjct: 185 PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQA 244
Query: 175 EKALNKFSGYELDGRVLTVNKA 196
E AL +F G + GR + + K+
Sbjct: 245 EAALIEFQGKDFLGRPIRLAKS 266
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 7/176 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
++ N+PW E++ LFE+ GSV E+ +K ++RG F+ M++ E+ AL
Sbjct: 35 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKK-ERNRGLVFIEMASPEEAATALKS 93
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEI 240
E +GR L V+ A K+ + P T ++V NL + L+E
Sbjct: 94 LESCEYEGRRLKVDYAKTKKKKTYAPRET-----PSPVPTFNLFVANLAFEARAKHLKEF 148
Query: 241 F-REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
F + GNV + ++ RS G+GFV+ ++ A+ G+ GR IR++
Sbjct: 149 FDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 204
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFE-EAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
P +FV NL ++ +++L F+ + G+V EVI+++ +S G+GFV T +
Sbjct: 125 PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQA 184
Query: 175 EKALNKFSGYELDGRVLTVNKA 196
E AL +F G + GR + + K+
Sbjct: 185 EAALIEFQGKDFLGRPIRLAKS 206
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++G L W+ L + F ++G++ A++V+D+ +GRSRGFGF+T + ++ AIAA+
Sbjct: 9 CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAM 68
Query: 283 DGQSLDGRTIRVSVAEGRSGG 303
+G LDGRTI V A+ GG
Sbjct: 69 NGMDLDGRTITVDKAQPHQGG 89
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 117 SED--LKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
SED + F+G L W L FE+ G + A+V+ +K + +SRGFGF+ + +
Sbjct: 2 SEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAM 61
Query: 175 EKALNKFSGYELDGRVLTVNKATPKEA 201
++A+ +G +LDGR +TV+KA P +
Sbjct: 62 DEAIAAMNGMDLDGRTITVDKAQPHQG 88
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 118 EDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
+D+K ++VG+L ++ L F V +VI NK T QS G+GFV + E+
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 177 ALNKFSGYELDG-----RVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
AL FSG + R+ + +T ++ E P ++VG+L
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGP------------DLSIFVGDLAPD 223
Query: 232 VDTARLEEIFR-EHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
V A L E F + +V+ A++V+D TGRS+G+GFV E + + A+ ++G R
Sbjct: 224 VSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSR 283
Query: 291 TIRVSVA 297
+RV +A
Sbjct: 284 QMRVGIA 290
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 23/198 (11%)
Query: 113 SAEPSEDLKIFVGNLPWDVESENLAMLFEEAG---SVEFAEVIYNKATNQSRGFGFVIMS 169
++E DL IFVG+L DV L F AG SV+ A+V+ + T +S+G+GFV
Sbjct: 206 ASENGPDLSIFVGDLAPDVSDAVLLETF--AGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 263
Query: 170 TAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXX------------XXXXX 217
+ +A+ + +G R + V ATPK A
Sbjct: 264 DENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGE 323
Query: 218 XXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADING 277
++VG L V L + F + G V + +I + +G GFV ++
Sbjct: 324 SNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQFANRQSAEE 377
Query: 278 AIAALDGQSLDGRTIRVS 295
AI L+G + T+R+S
Sbjct: 378 AIGNLNGTVIGKNTVRLS 395
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 115 EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+PS ++VGN+ V L +F G VE ++I + ++ +GFV
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSA 104
Query: 175 EKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
A+ +G L G+ + VN A R + ++VG+L V
Sbjct: 105 GLAILSLNGRHLFGQPIKVNWAYASGQRED------------TSSHFNIFVGDLSPEVTD 152
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
A L F + +AR++ D++TGRSRGFGFV+ ++ D AI + G+ L R IR
Sbjct: 153 AMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRC 212
Query: 295 SVA 297
+ A
Sbjct: 213 NWA 215
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 115 EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+PS ++VGN+ V L +F G VE ++I + ++ +GFV
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSA 104
Query: 175 EKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
A+ +G L G+ + VN A R + ++VG+L V
Sbjct: 105 GLAILSLNGRHLFGQPIKVNWAYASGQRED------------TSSHFNIFVGDLSPEVTD 152
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
A L F + +AR++ D++TGRSRGFGFV+ ++ D AI + G+ L R IR
Sbjct: 153 AMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRC 212
Query: 295 SVA 297
+ A
Sbjct: 213 NWA 215
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 118 EDL---KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
EDL KIFV L WD ++++L F++ G +E + + +K + QS+G+GF++ +
Sbjct: 123 EDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGA 182
Query: 175 EKALNKFSGYELDGRVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
AL K ++ R+ A+ P + P P +YV N+ +
Sbjct: 183 RNAL-KQPQKKIGTRMTACQLASIGPVQGNPVVAP---AQHFNPENVQRKIYVSNVSADI 238
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
D +L E F G +E + +D+ TGR +GF FV S E+
Sbjct: 239 DPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLES 280
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 118 EDL---KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
EDL KIFV L WD ++++L F++ G +E + + +K + QS+G+GF++ +
Sbjct: 123 EDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGA 182
Query: 175 EKALNKFSGYELDGRVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
AL K ++ R+ A+ P + P P +YV N+ +
Sbjct: 183 RNAL-KQPQKKIGTRMTACQLASIGPVQGNPVVAP---AQHFNPENVQRKIYVSNVSADI 238
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
D +L E F G +E + +D+ TGR +GF FV S E+
Sbjct: 239 DPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLES 280
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 5/182 (2%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+++ NL DV + L F E G + + I RG+ FV ED +A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKI-VSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXV---YVGNLPWSVDTARLE 238
+G + + L V +A K R + F V YV N+ +V L
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
+ F + G + + +++ D E G+S+GFGFV S+ + A+ GQ G+ + V++A+
Sbjct: 322 KHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 299 GR 300
+
Sbjct: 381 KK 382
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG+L V L F E S+ + + ++ +S +G+ + +D A+ K
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIF 241
+ L+G+++ V + R P V+V NLP SV A L+++F
Sbjct: 86 NNSLLNGKMIRVMWSV-------RAP------DARRNGVGNVFVKNLPESVTNAVLQDMF 132
Query: 242 REHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
++ GN+ + ++ E G+SRG+GFV E + AI L+ + + I V
Sbjct: 133 KKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 6/195 (3%)
Query: 114 AEPSEDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAE 172
A+P D + +F +P ++ F +AG V +I ++ + +S+G G++
Sbjct: 161 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVM 220
Query: 173 DLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
+ A+ SG G+ + V P EA +YVGNL +++
Sbjct: 221 SVPMAI-ALSGQLFLGQPVMVK---PSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNM 276
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQ-SLDGRT 291
+L +IF G VE ++ +D ETG+ +GFGF+ A AL+G+ + GRT
Sbjct: 277 SELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRT 336
Query: 292 IRVSVAEGRSGGRSS 306
I+VS G + S
Sbjct: 337 IKVSSVSDHIGTQDS 351
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VYVGNL + L E F +GNV +A ++ DR T RSRGFGFVT SS ++ A++ +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 283 DGQSLDGRTIRVSV 296
DG+ L+GR RVSV
Sbjct: 65 DGKELNGR--RVSV 76
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL + L F G+V A V+ ++ T++SRGFGFV S+ + E A++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 181 FSGYELDGRVLTV 193
G EL+GR ++V
Sbjct: 64 MDGKELNGRRVSV 76
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 16/183 (8%)
Query: 115 EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+P+ ++ GN+ V L +F G +E ++I ++ +GFV
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCA 113
Query: 175 EKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
A+ +G + G+ + VN A R + ++VG+L V
Sbjct: 114 SMAIMTLNGRHIFGQPMKVNWAYATGQRED------------TSSHFNIFVGDLSPEVTD 161
Query: 235 ARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
A L + F + +AR++ D++TGRSRGFGFV+ ++ D AI ++G+ + R IR
Sbjct: 162 AALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRC 221
Query: 295 SVA 297
+ A
Sbjct: 222 NWA 224
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 81/211 (38%), Gaps = 47/211 (22%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S IFVG+L +V L F S A V++++ T +SRGFGFV +D +
Sbjct: 145 SSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQT 204
Query: 177 ALNKFSGYELDGRVLTVNKATP-------------------------------KEARPER 205
A+N+ +G + R + N AT E PE
Sbjct: 205 AINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPEN 264
Query: 206 PPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFG 265
P+ VYVGNL V L +F G A ++ + R +GFG
Sbjct: 265 NPQ-----------FTTVYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFG 309
Query: 266 FVTMSSEADINGAIAALDGQS-LDGRTIRVS 295
FV ++ + AI + Q L R IR S
Sbjct: 310 FVRYNTHDEAALAIQMGNAQPFLFSRQIRCS 340
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 122 IFVGNL-PWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++G+L PW ++ L +F G A+VI NK S G+GF+ E+ L
Sbjct: 82 LWIGDLQPW-MDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 181 FSGYELDG-----RVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
++G + R+ + + E P T V+VG+L V
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHT-------------VFVGDLAPDVTDH 187
Query: 236 RLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
L E F+ + +V+ A++V DR TGRS+G+GFV + E++ A+ ++GQ R +R
Sbjct: 188 MLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRT 247
Query: 295 SVAEGR 300
A +
Sbjct: 248 GPAANK 253
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 122 IFVGNLPWDVESENLAMLFEEA-GSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+FVG+L DV L F+ SV+ A+V+ ++ T +S+G+GFV + + +A+ +
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 181 FSGYELDGRVLTVNKATPKEA---RPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARL 237
+G R + A K+ +P T ++VG + SV L
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 238 EEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVS 295
+ +F + G + + +I + GFV ++ A A++ L+G L G++IR+S
Sbjct: 295 KSVFGQFGELVHVKIPAGKRC------GFVQYANRACAEQALSVLNGTQLGGQSIRLS 346
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 119 DLKIFVGNLPWDVESENLAMLF-EEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
DL IFVG+L DV L F E+ SV+ A+V+ + T +S+G+GFV + KA
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERP-----PRTFXXXXXXXXXXXXVYVGNLPWSV 232
+ + +G + R + + ATP++ + P ++VG L SV
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTI 292
L++ F E G + + +I + +G GFV + + A+ L+G + +T+
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 369
Query: 293 RVS 295
R+S
Sbjct: 370 RLS 372
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFA--EVIYNKATNQSRGFGFVIMSTAEDLE 175
E+ I+VG+L ++ L F E +VI NK S G+GFV + + +
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 176 KALNKFSGYELDG--RVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
K L +F+G + + +N A+ E R E ++VG+L
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLEN-----------NGPDLSIFVGDLSPD 207
Query: 232 VDTARLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
V L E F E + +V+ A++V+D TGRS+G+GFV E + A+ ++G R
Sbjct: 208 VSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSR 267
Query: 291 TIRVSVAEGR 300
+R+ A R
Sbjct: 268 AMRIGPATPR 277
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 55/81 (67%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+F+G L + + L+ F + G V A+++ ++ +++S+GFGFV ++A++ +KAL +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 181 FSGYELDGRVLTVNKATPKEA 201
F+G +L+GR + V+ A K++
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++G L + L E F + G V A+IVMDR + RS+GFGFVT +S + A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 283 DGQSLDGRTIRVSVAEGR 300
+GQ L+GRTI V A+ +
Sbjct: 96 NGQQLNGRTIFVDYAKAK 113
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+IFVG L WDV L F+ G + +++ + T + RGFGF+ + + A+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 181 FSGYELDGRVLTVNKATPK 199
G EL +V++VNKA PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W V +LE F +G + +I++ R+TGR RGFGF+T + + AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 283 DGQSLDGRTIRVSVAEGRSGG 303
G+ L + I V+ AE + GG
Sbjct: 74 HGRELGNKVISVNKAEPKVGG 94
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+IFVG L WDV L F+ G + +++ + T + RGFGF+ + + A+
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 181 FSGYELDGRVLTVNKATPK 199
G EL +V++VNKA PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L W V +LE F +G + +I++ R+TGR RGFGF+T + + AI +
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 283 DGQSLDGRTIRVSVAEGRSGG 303
G+ L + I V+ AE + GG
Sbjct: 74 HGRELGNKVISVNKAEPKVGG 94
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 119 DLKIFVGNLPWDVESENLAMLF-EEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
DL IFVG+L DV L F E+ SV+ A+V+ + T +S+G+GFV + KA
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPERP-----PRTFXXXXXXXXXXXXVYVGNLPWSV 232
+ + +G + R + + ATP++ + P ++VG L SV
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTI 292
L++ F E G + + +I + +G GFV + + A+ L+G + +T+
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 371
Query: 293 RVS 295
R+S
Sbjct: 372 RLS 374
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 88/190 (46%), Gaps = 18/190 (9%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFA--EVIYNKATNQSRGFGFVIMSTAEDLE 175
E+ I+VG+L ++ L F A E +VI NK S G+GFV + + +
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 176 KALNKFSGYELDG--RVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
K L +F+G + + +N A+ E R E ++VG+L
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLEN-----------NGPDLSIFVGDLAPD 209
Query: 232 VDTARLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
V A L E F E + +V+ A++V+D TGRS+G+GFV E + A+ ++G R
Sbjct: 210 VSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSR 269
Query: 291 TIRVSVAEGR 300
+R+ A R
Sbjct: 270 AMRIGPATPR 279
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+Y+G L D L++ F V AR++ ++ TGRSRG+GFV SE N AI+A+
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 283 DGQSLDGRTIRVSVAE 298
+GQ L+G I V+VA+
Sbjct: 93 NGQELNGFNISVNVAK 108
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L S D L+E F G + +A +V+DRE+G SRGFGFVT S N A+ A+
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 283 DGQSLDGRTIRVSVAE 298
+ LDGR I V A+
Sbjct: 98 QNKELDGRIIGVHPAD 113
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG L + E L F G + A V+ ++ + SRGFGFV + E A+
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 181 FSGYELDGRVLTVNKA 196
ELDGR++ V+ A
Sbjct: 97 MQNKELDGRIIGVHPA 112
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+F NL +++E ++ F+EAG V N+ RGFG V +++E+ +KAL +F
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EF 357
Query: 182 SGYELDGRVLTVNKATPKEARPERPPRTFXX----XXXXXXXXXXVYVGNLPWSVDTARL 237
G L GR + ++ A + R ERP T ++V S+ +
Sbjct: 358 HGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDI 417
Query: 238 EEIFREH----GNVENARIVMDRETGRSRGFGFVTMS 270
+ REH G ++N + +DR+TG S+G ++ S
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS 454
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++ NL ++++ A +E F+E G V + R +R+ G RGFG V +S + A+
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EF 357
Query: 283 DGQSLDGRTIRVSVAE--GRSGGRSSF 307
G+ L GR IR+ +A+ G G R +F
Sbjct: 358 HGRPLLGREIRLDIAQERGERGERPAF 384
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S +K+FVG++P E + FE+ G+V +I +K T Q +G FV +T++D ++
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
A+ L ++ P + R ++VG+L
Sbjct: 177 AIRA-----LHNQITLPGGTGPVQVR-----YADGERERIGTLEFKLFVGSLNKQATEKE 226
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
+EEIF + G+VE+ ++ D E +SRG GFV SS+ AI L+G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG-SVEFAEVIYNKA-TNQSRGFGFVIM--STAEDLEK 176
++F+GN+P + + + E+ G VE E+I + T ++RGF FV+ + D +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
S ++L+G TV A PK + PE +YV N+P + T +
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSS-PEH--------SAAAAQVKALYVKNIPENTSTEQ 307
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L+E+F+ HG V +IV G R FGFV + + A+ + ++G+ + V +
Sbjct: 308 LKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365
Query: 297 AE 298
A+
Sbjct: 366 AK 367
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S +K+FVG++P E + FE+ G+V +I +K T Q +G FV +T++D ++
Sbjct: 42 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 101
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
A+ L ++ P + R ++VG+L
Sbjct: 102 AIRA-----LHNQITLPGGTGPVQVR-----YADGERERIGTLEFKLFVGSLNKQATEKE 151
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
+EEIF + G+VE+ ++ D E +SRG GFV SS+ AI L+G
Sbjct: 152 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNG 198
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 117 SEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEK 176
S +K+FVG++P E + FE+ G+V +I +K T Q +G FV +T++D ++
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
A+ L ++ P + R ++VG+L
Sbjct: 177 AIRA-----LHNQITLPGGTGPVQVR-----YADGERERIGTLEFKLFVGSLNKQATEKE 226
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDG 284
+EEIF + G+VE+ ++ D E +SRG GFV SS+ AI L+G
Sbjct: 227 VEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNG 273
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG-SVEFAEVIYNKA-TNQSRGFGFVIM--STAEDLEK 176
++F+GN+P + + + E+ G VE E+I + T ++RGF FV+ + D +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
S ++L+G TV A PK + PE +YV N+P + T +
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSS-PEH--------SAAAAQVKALYVKNIPENTSTEQ 307
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L+E+F+ HG V +IV G R FGFV + + A+ + ++G+ + V +
Sbjct: 308 LKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365
Query: 297 AE 298
A+
Sbjct: 366 AK 367
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P ++F+G LP DV E+L L EE G + ++ ++ + S+G+ FV T + +
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLP--WSVD 233
KA+ + E G+ + + + K +++GN+P W+ D
Sbjct: 172 KAIEELHSKEFKGKTIRCSLSETKN---------------------RLFIGNIPKNWTED 210
Query: 234 TARLEEIFREHG-NVENARIVMD-RETGRSRGFGFVTMSSEA 273
R ++ + G VEN ++ D T R+RGF FV + A
Sbjct: 211 EFR--KVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNA 250
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V++G LP V L ++ E G + R++ DR++G S+G+ FV ++ AI L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 283 DGQSLDGRTIRVSVAE 298
+ G+TIR S++E
Sbjct: 178 HSKEFKGKTIRCSLSE 193
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAG-SVEFAEVIYNKA-TNQSRGFGFVIM--STAEDLEK 176
++F+GN+P + + + E+ G VE E+I + T ++RGF FV+ + D +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 177 ALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
S ++L+G TV A PK + PE +YV N+P + T +
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSS-PEH--------SAAAAQVKALYVKNIPENTSTEQ 307
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L+E+F+ HG V +IV G R FGFV + + A+ + ++G+ + V +
Sbjct: 308 LKELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 365
Query: 297 AE 298
A+
Sbjct: 366 AK 367
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 27/162 (16%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P ++F+G LP DV E+L L EE G + ++ ++ + S+G+ FV T + +
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLP--WSVD 233
KA+ + E G+ + + + K +++GN+P W+ D
Sbjct: 172 KAIEELHSKEFKGKTIRCSLSETKN---------------------RLFIGNIPKNWTED 210
Query: 234 TARLEEIFREHG-NVENARIVMD-RETGRSRGFGFVTMSSEA 273
R ++ + G VEN ++ D T R+RGF FV + A
Sbjct: 211 EFR--KVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNA 250
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V++G LP V L ++ E G + R++ DR++G S+G+ FV ++ AI L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 283 DGQSLDGRTIRVSVAE 298
+ G+TIR S++E
Sbjct: 178 HSKEFKGKTIRCSLSE 193
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L L ++F G ++ AR++ D ET R +GFGF+T SE D A+ +L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 283 DGQSLDGRTIRVSVAE 298
DG+ +DGR I V VA+
Sbjct: 69 DGKIVDGRLIFVEVAK 84
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
++FV L ++L LF G ++ A +I + T + +GFGF+ + +D KAL
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 181 FSGYELDGRVLTVNKATPKE 200
G +DGR++ V A E
Sbjct: 68 LDGKIVDGRLIFVEVAKNAE 87
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 94 PTWANEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIY 153
P E +D GG ++ + + + + V NL D +L LF G+V V
Sbjct: 183 PPSMREGADRKAGGSDMRSRHDENS---VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAI 239
Query: 154 NKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPK 199
++ T+ SRGFGFV + ED ++A+NK +GY D +L V +TPK
Sbjct: 240 DQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWSTPK 285
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V V NL L E+FR G V + +D++T SRGFGFV+ S D AI L
Sbjct: 208 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 267
Query: 283 DGQSLDGRTIRV 294
+G D +RV
Sbjct: 268 NGYGYDNLILRV 279
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD ++E L F++ G +E + +++K + +S+G+GF++ + AL K
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL-K 199
Query: 181 FSGYELDGRVLTVNKATP-----KEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
++ R+ A+ +YV N+ +D
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
+L F + G +E + +D+ TGR +GF FV SSE+
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD ++E L F++ G +E + +++K + +S+G+GF++ + AL K
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL-K 199
Query: 181 FSGYELDGRVLTVNKATP-----KEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
++ R+ A+ +YV N+ +D
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
+L F + G +E + +D+ TGR +GF FV SSE+
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD ++E L F++ G +E + +++K + +S+G+GF++ + AL K
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL-K 199
Query: 181 FSGYELDGRVLTVNKATP-----KEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
++ R+ A+ +YV N+ +D
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
+L F + G +E + +D+ TGR +GF FV SSE+
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD ++E L F++ G +E + +++K + +S+G+GF++ + AL K
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL-K 199
Query: 181 FSGYELDGRVLTVNKATP-----KEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
++ R+ A+ +YV N+ +D
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
+L F + G +E + +D+ TGR +GF FV SSE+
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 7/159 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV L WD ++E L F++ G +E + +++K + +S+G+GF++ + AL K
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL-K 199
Query: 181 FSGYELDGRVLTVNKATP-----KEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTA 235
++ R+ A+ +YV N+ +D
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 236 RLEEIFREHGNVENARIVMDRETGRSRGFG-FVTMSSEA 273
+L F + G +E + +D+ TGR +GF FV SSE+
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSES 298
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 115 EPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+P+ ++ GN+ V L +F G +E ++I ++ +GFV
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCA 113
Query: 175 EKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDT 234
A+ +G + G+ + VN A R + ++VG+L V
Sbjct: 114 SMAIMTLNGRHIFGQPMKVNWAYATGQRED------------TSSHFNIFVGDLSPEVTD 161
Query: 235 ARLEEIFREHGNV----ENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
A L + F + +AR++ D++TGRSRGFGFV+ ++ D AI ++G+ + R
Sbjct: 162 AALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSR 221
Query: 291 TIRVSVA 297
IR + A
Sbjct: 222 QIRCNWA 228
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+VGN+P+ +L EI E G V + R+V DRETG+ +G+GF E A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 283 DGQSLDGRTIRVSVAEGRSG 302
++GR +RV AE G
Sbjct: 71 QSYEINGRQLRVDFAENDKG 90
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+FVGN+P+D E L + E G V ++ ++ T + +G+GF E A
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 182 SGYELDGRVLTVN 194
YE++GR L V+
Sbjct: 71 QSYEINGRQLRVD 83
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 18/190 (9%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFA--EVIYNKATNQSRGFGFVIMSTAEDLE 175
E+ I+VG+L ++ L F E +VI NK S G+GFV + + +
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 176 KALNKFSGYELDG--RVLTVNKAT--PKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWS 231
K L +F+G + + +N A+ E R E ++VG+L
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLEN-----------NGPDLSIFVGDLSPD 207
Query: 232 VDTARLEEIFRE-HGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGR 290
V L E F E + +V+ A++V+D TGRS+G+GFV E + A+ ++G R
Sbjct: 208 VSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSR 267
Query: 291 TIRVSVAEGR 300
+R+ A R
Sbjct: 268 AMRIGPATPR 277
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 119 DLKIFVGNLPWDVESENLAMLF-EEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
DL IFVG+L DV L F E+ SV+ A+V+ + T +S+G+GFV + KA
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 178 LNKFSGYELDGRVLTVNKATPKE 200
+ + +G + R + + ATP++
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRK 278
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 19/180 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIM--STAEDLEKAL 178
++F+GN+P + + + E+ G + T ++RGF FV+ + D +
Sbjct: 177 RLFIGNIPKNWTEDEFRKVIEDVGPGDPTN------TTRNRGFAFVLYYNNACADYSRQK 230
Query: 179 NKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTARLE 238
S ++L+G TV A PK + PE +YV N+P + T +L+
Sbjct: 231 MIDSNFKLEGNAPTVTWADPKSS-PEH--------SAAAAQVKALYVKNIPENTSTEQLK 281
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
E+F+ HG V +IV G R FGFV + + A+ + ++G+ + V +A+
Sbjct: 282 ELFQRHGEV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 339
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V++G LP V L ++ E G + R++ DR++G S+G+ FV ++ AI L
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 283 DGQSLDGRTIRVSVAE 298
+ G+TIR S++E
Sbjct: 158 HSKEFKGKTIRCSLSE 173
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 31/160 (19%)
Query: 116 PSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLE 175
P ++F+G LP DV E+L L EE G + ++ ++ + S+G+ FV T + +
Sbjct: 92 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 151
Query: 176 KALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLP--WSVD 233
KA+ + E G+ + + + K +++GN+P W+
Sbjct: 152 KAIEELHSKEFKGKTIRCSLSETKN---------------------RLFIGNIPKNWT-- 188
Query: 234 TARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEA 273
E+ FR+ +E+ T R+RGF FV + A
Sbjct: 189 ----EDEFRK--VIEDVGPGDPTNTTRNRGFAFVLYYNNA 222
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 37/203 (18%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+FV NLP++ + N+ F++ G V ++I N + G GFV ++ + E+AL K
Sbjct: 70 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVN-LKGKLVGCGFVEFASVNEAEEALQKK 128
Query: 182 SGYELDGRVLTVNKATPK----------------------EARP----ERPPRTFXXXXX 215
+G LD + ++ A K E+ P ERPP +
Sbjct: 129 NGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNS------ 182
Query: 216 XXXXXXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADI 275
++V NL + + + F G V + R++++ E G+ G+GFV +S +
Sbjct: 183 ---VEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFASADET 238
Query: 276 NGAIAALDGQSLDGRTIRVSVAE 298
A+ +G+ L I + VA+
Sbjct: 239 KKALENKNGEYLHDHKIFIDVAK 261
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+ V NL D +L LF G+V V ++ T SRGFGFV + ED ++A+NK
Sbjct: 242 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 301
Query: 182 SGYELDGRVLTVNKATPK 199
+GY D +L V ATP+
Sbjct: 302 NGYGYDNLILRVEWATPR 319
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 37/78 (47%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V V NL L E+F G V + +D++TG SRGFGFV S D AI L
Sbjct: 242 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 301
Query: 283 DGQSLDGRTIRVSVAEGR 300
+G D +RV A R
Sbjct: 302 NGYGYDNLILRVEWATPR 319
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+ V NL D +L LF G+V V ++ T SRGFGFV + ED ++A+NK
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 182 SGYELDGRVLTVNKATPK 199
+GY D +L V ATP+
Sbjct: 275 NGYGYDNLILRVEWATPR 292
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 37/78 (47%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V V NL L E+F G V + +D++TG SRGFGFV S D AI L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 283 DGQSLDGRTIRVSVAEGR 300
+G D +RV A R
Sbjct: 275 NGYGYDNLILRVEWATPR 292
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 90/208 (43%), Gaps = 16/208 (7%)
Query: 96 WANEDSDETEGGEEVVASAEPSEDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYN 154
W D+ E ++V A+P D + +F + ++ F AG V +I +
Sbjct: 208 WRKRHKDKKE--DKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMD 265
Query: 155 KATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXX 214
+ + +SRG G+V + A+ SG L G+ + V P EA T
Sbjct: 266 RISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVK---PSEAEKNLVQSTTAAAG 321
Query: 215 XXXXX------XXXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVT 268
+YVGNL ++ L ++F G+VE ++ D ETG +GFGFV
Sbjct: 322 AGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQ 380
Query: 269 MSSEADINGAIAALDGQ-SLDGRTIRVS 295
+ D A+ L+GQ + GR I+VS
Sbjct: 381 FARLEDARNAL-NLNGQLEIAGRAIKVS 407
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL ++ ++L +FE GSVE +V ++ T +GFGFV + ED ALN
Sbjct: 335 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNL 393
Query: 181 FSGYELDGRVLTVNKATPKEARPE 204
E+ GR + V+ T + PE
Sbjct: 394 NGQLEIAGRAIKVSAVTDQTEVPE 417
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+VG L W+ + L+ F + G+V +++I+ DRE+GRSRGFGFVT E + AI +
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 283 D 283
+
Sbjct: 68 N 68
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 118 EDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKA 177
E +IFVG L +V +L F G + +++ + T +SRGFGF+ + ++++
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 178 LNKFSGYELDGRVLTVNKATPKEARPE 204
+ + G + RV++VN+A PK R +
Sbjct: 65 IREMHGRDFGDRVISVNRAEPKLGRDD 91
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++VG L V LE F G++ + +I+++R+TGRSRGFGF+T + ++ +I +
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 283 DGQSLDGRTIRVSVAE 298
G+ R I V+ AE
Sbjct: 69 HGRDFGDRVISVNRAE 84
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 113 SAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAE 172
+ E E +K+FVG +P + L LF E V +I K T RG F+ T E
Sbjct: 5 TMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 173 DLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSV 232
D +K +N F NK T A P + ++VG LP +V
Sbjct: 65 DADKVINSFH-----------NKKTLPGA--SSPLQVKYADGELERLEHKLFVGMLPKNV 111
Query: 233 DTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSL 287
++ +F E+G +++ +I+ S+G F+ S+ A+ AL+G+ +
Sbjct: 112 SETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAMEALNGRHI 165
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++ N+P + L F+ G V +A++ +D+ TG S+ FGF++ S+A AI +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 283 DGQSLDGRTIRVSV 296
+G L G+ ++V +
Sbjct: 392 NGCQLSGKKLKVQL 405
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+F+ N+P + E + LA F+ G V A+V +KAT S+ FGF+ + + A+N
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 182 SGYELDGRVLTV 193
+G +L G+ L V
Sbjct: 392 NGCQLSGKKLKV 403
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+V L D L +IF + GNV +++I+ DR+TG+SR FGFVT E + AI +
Sbjct: 9 CFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIM 68
Query: 283 D-----GQSLDGRTIRVSVAEGRSGGRSS 306
D + ++ +I V VA R RS+
Sbjct: 69 DVEESRSKCVNVGSITVEVARQRRKNRSA 97
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 29/199 (14%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQS-RGFGFVIMSTAEDLEKALNK 180
+F GNL + + ++ F+EAG E +V + + S +G+G + ++ E+ +KAL
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAG--EVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALE- 442
Query: 181 FSGYELDGRVLTVN----KATPKEARPERPPRTFXXXXXXXXXXXXVYVGNLPWSVDTAR 236
+G L GR + ++ + TP+ + P R +YV S+
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGR--------KGEGSQSRTIYVRGFSSSLGEDE 494
Query: 237 LEEIFREH----GNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTI 292
+++ R H G V + DRETG SRGF ++ ++S D L G + G I
Sbjct: 495 IKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD---EALQLSGSEIGGGNI 551
Query: 293 RVSVA------EGRSGGRS 305
V + EGRS R+
Sbjct: 552 HVEESRPRDSDEGRSSNRA 570
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V V LP+S+ A+LEE F E G V +V ++ + RGF FV + + D+N AI
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 283 DGQSLDGRTIRVSVAEGR 300
+G ++ GR I V A R
Sbjct: 82 NGSTVGGRRITVKQAAHR 99
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 103 ETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRG 162
E + GEE P + V LP+ + + L F E G V ++ NK +++ RG
Sbjct: 7 ERKDGEE----KSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRG 62
Query: 163 FGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPER 205
F FV + ED+ +A+ +G + GR +TV +A + + ER
Sbjct: 63 FAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRPSLQER 105
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ +SE L FE+ G + A VI +K T +S+G+GFV E +A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 181 FSGYELDGRVLTVNKATPKEARPERP 206
+ +DGR N A+ RP P
Sbjct: 85 PTP-IIDGRRANCNLASLGRPRPPLP 109
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTM 269
V+VG L W + L + F ++G + A ++ D+ TGRS+G+GFVT
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF 72
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YV L V LE+ F + G V + +V+D T SRGFGF++M S D N I +L
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 283 DGQSLDGRTIRV 294
D L GR I V
Sbjct: 107 DHSVLQGRVITV 118
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VYVG LP+ + + +F +G+V +IV DR R + +GFVT S+ + AI +
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDM 67
Query: 283 DGQSLDGRTIRVSVAEGRSG 302
DG+S+ GR +RV+ R G
Sbjct: 68 DGKSIGGRAVRVNDVTTRGG 87
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 224 YVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALD 283
+V SV RL+++F E G V N +I+ + T +S G+G+V +S+ D A+ A++
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 284 GQSLDGRTIRVSVAE 298
G+ DGR I V +
Sbjct: 140 GKFFDGRFILVKFGQ 154
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%)
Query: 123 FVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFS 182
FV V L +F E G V ++I N+ T QS G+G+V ++ ED + A+ +
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 183 GYELDGRVLTVNKATPKEARPERPPRTF 210
G DGR + V P +R RP F
Sbjct: 140 GKFFDGRFILVKFGQPGLSRRRRPHSDF 167
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFV LPW+ E L +FE G +E V+ +KAT +++GFGFV+ T + ++AL +
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALN 179
KIFV LPW+ E L +FE G +E V+ +KAT +++GFGFV+ T + ++AL
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 101 SDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQS 160
S + E AEPS +L FV L SE L F + G V A+V+ ++ + S
Sbjct: 39 SPQAESQTPARPQAEPSTNL--FVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYS 96
Query: 161 RGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKE 200
+GFGFV +T ED K + G LDG V+ A P+E
Sbjct: 97 KGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPRE 136
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L + L F + G V +A++V DR +G S+GFGFV ++ D IA +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 283 DGQSLDGRTIRVSVAEGR 300
DG+ LDG I A R
Sbjct: 118 DGKFLDGWVIFAEYARPR 135
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KIFVG L W+ + + + FE+ G + A VI +K T +S+G+GFV AE +A
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 181 FSGYELDGRVLTVNKATPKEARPERPP 207
+ +DGR N A +P RPP
Sbjct: 83 MNPV-IDGRRANCNLACLGAQKP-RPP 107
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 21/197 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEE------AGSVEFAEVIYNKATNQSRGFGFVIMSTAEDL 174
+++VG LP ++++ F + + + + N N + F FV M + E+
Sbjct: 256 RVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEA 315
Query: 175 EKALNKFSGYELDGRVLTVNKAT---PKEAR---PERPPRTFXXXXXXXXXXXX------ 222
A+ G L+G + V + T P A P +P
Sbjct: 316 SNAM-ALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLSSGSTGGLEGP 374
Query: 223 --VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
++VG LP+ ++ E+ G + +V DRETG S+G+ F + + A A
Sbjct: 375 DRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACA 434
Query: 281 ALDGQSLDGRTIRVSVA 297
AL+G + +T+ V A
Sbjct: 435 ALNGIKMGDKTLTVRRA 451
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 112 ASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTA 171
S PS KIFVG L V F + G + V+Y+ T + RGFGF+ +
Sbjct: 120 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 179
Query: 172 EDLEKALNKFSGYELDGRVLTVNKATPKE 200
E ++K L K + +EL+G+++ V A PK+
Sbjct: 180 EAVDKVLQK-TFHELNGKMVEVKLAVPKD 207
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+Y+G LP ++ L +F G + A+++ DR TG S+G+GFV + N A+ A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 283 DGQSLDGRTIRVSVA 297
+G +GRT+ V +A
Sbjct: 542 NGYRFEGRTLAVRIA 556
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 94 PTWANEDSD--ETEGGEEVVASAEPSEDL---KIFVGNLPWDVESENLAMLFEEAGSVEF 148
P WAN + G + PS++ +++G LP +E + L LF G +
Sbjct: 449 PPWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVM 508
Query: 149 AEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTV 193
A+VI ++ T S+G+GFV + + A+ +GY +GR L V
Sbjct: 509 AKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+Y+G LP ++ L +F G + A+++ DR TG S+G+GFV + N A+ A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 283 DGQSLDGRTIRVSVA 297
+G +GRT+ V +A
Sbjct: 542 NGYRFEGRTLAVRIA 556
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 94 PTWANEDSD--ETEGGEEVVASAEPSEDL---KIFVGNLPWDVESENLAMLFEEAGSVEF 148
P WAN + G + PS++ +++G LP +E + L LF G +
Sbjct: 449 PPWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVM 508
Query: 149 AEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTV 193
A+VI ++ T S+G+GFV + + A+ +GY +GR L V
Sbjct: 509 AKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+Y+G LP ++ L +F G + A+++ DR TG S+G+GFV + N A+ A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 283 DGQSLDGRTIRVSVA 297
+G +GRT+ V +A
Sbjct: 542 NGYRFEGRTLAVRIA 556
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 94 PTWANEDSD--ETEGGEEVVASAEPSEDL---KIFVGNLPWDVESENLAMLFEEAGSVEF 148
P WAN + G + PS++ +++G LP +E + L LF G +
Sbjct: 449 PPWANNAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVM 508
Query: 149 AEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTV 193
A+VI ++ T S+G+GFV + + A+ +GY +GR L V
Sbjct: 509 AKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 112 ASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTA 171
S PS KIFVG L V F + G + V+Y+ T + RGFGF+ +
Sbjct: 38 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 97
Query: 172 EDLEKALNKFSGYELDGRVLTVNKATPKE 200
E ++K L K + +EL+G+++ V A PK+
Sbjct: 98 EAVDKVLQK-TFHELNGKMVEVKLAVPKD 125
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YV L V LE+ F + G V + +V+D T SRGFGF++M S D N I +L
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 283 DGQSLDGRTIRVSVA 297
D L GR I V A
Sbjct: 137 DHSVLQGRVITVEKA 151
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++V L V +L F + G V ++ + T +SRGFGF+ M + D + +
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 182 SGYELDGRVLTVNKA 196
L GRV+TV KA
Sbjct: 137 DHSVLQGRVITVEKA 151
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 54.3 bits (129), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 119 DLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKAL 178
+ KI+V LPW +E L FE G + +A+V+ + AT +S+GFGFV E +A
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRAC 67
Query: 179 NKFSGYELDGRVLTVN 194
+ +DGR TVN
Sbjct: 68 EN-PNHTIDGR--TVN 80
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YV LPW T L F G + A++V D T RS+GFGFVT ++ A A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFR---EVESATRAC 67
Query: 283 D--GQSLDGRTIRVSVA 297
+ ++DGRT+ +A
Sbjct: 68 ENPNHTIDGRTVNCKLA 84
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 86/196 (43%), Gaps = 14/196 (7%)
Query: 108 EEVVASAEPSEDLK-IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFV 166
++V A+P D + +F + ++ F AG V +I ++ + +SRG G+V
Sbjct: 169 DKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYV 228
Query: 167 IMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXX------X 220
+ A+ SG L G+ + V P EA T
Sbjct: 229 EFYDTMSVPMAI-ALSGQPLLGQPVMVK---PSEAEKNLVQSTTAAAGAGGMLGPYSGGA 284
Query: 221 XXVYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA 280
+YVGNL ++ L ++F G+VE ++ D ETG +GFGFV + D A+
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL- 342
Query: 281 ALDGQ-SLDGRTIRVS 295
L+GQ + GR I+VS
Sbjct: 343 NLNGQLEIAGRAIKVS 358
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL ++ ++L +FE GSVE +V ++ T +GFGFV + ED ALN
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNL 344
Query: 181 FSGYELDGRVLTVNKATPKEARPE 204
E+ GR + V+ T + PE
Sbjct: 345 NGQLEIAGRAIKVSAVTDQTEVPE 368
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVG LPW L F + G++ + +V DRETGRS G+GFVT D A A
Sbjct: 54 IYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFR---DAESATRAC 110
Query: 283 DGQS--LDGRTIRVSVAEGRSGGR 304
+DGR + ++A GGR
Sbjct: 111 QNPKPVIDGREAKCNLA--YIGGR 132
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KI+VG LPW+ +E L FE+ G + ++ ++ T +S G+GFV AE +A
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 181 FSGYELDGRVLTVNKA 196
+DGR N A
Sbjct: 113 -PKPVIDGREAKCNLA 127
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 17/170 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG + + E L F G+V A V K T + RGFGFV + D+ KAL
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR- 65
Query: 181 FSGYELDGRVLTVNKATPKEARPERP-PRTF--------------XXXXXXXXXXXXVYV 225
+ + G+ + V KA K ++P F ++V
Sbjct: 66 -DTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFV 124
Query: 226 GNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADI 275
G L + + F G + ++ D T R RGFGFVT SE +
Sbjct: 125 GGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L +L++ F G + +AR++ DR++GRS+GFGFVT ++ D A A +
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 283 DGQSLDGRTIRV 294
+ + LDG I V
Sbjct: 96 NAKFLDGWVIFV 107
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++ N+P L F+ G V +A++ +D+ TG S+ FGFV+ S+A AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
+G+ L G+ ++V + + G+ S
Sbjct: 411 NGRHLGGKKLKVQLKRDSNNGQPS 434
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 107 GEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFV 166
G V E E +F+ N+P + + LA F+ G V A+V +KAT S+ FGFV
Sbjct: 336 GLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFV 395
Query: 167 IMSTAEDLEKALNKFSGYELDGRVLTV 193
+ + A++ +G L G+ L V
Sbjct: 396 SYDSQAAAQNAIDMMNGRHLGGKKLKV 422
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
KI+VG LPW E L F+ G + V+ ++ T++S+G+GFV AE +A K
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC-K 72
Query: 181 FSGYELDGRVLTVN------KATPKEARPERPPR 208
++GR+ K P +++P P+
Sbjct: 73 DPNPTIEGRITNCKLAFVGAKVKPNQSQPSNLPQ 106
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVG LPW+ L F+ G + + +V DRET RS+G+GFVT D A A
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFK---DAESATRAC 71
Query: 283 D--GQSLDGRTIRVSVA 297
+++GR +A
Sbjct: 72 KDPNPTIEGRITNCKLA 88
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
+++VGNL ++ ++L +FE GSVE +V ++ T +GFGFV + ED ALN
Sbjct: 324 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNL 382
Query: 181 FSGYELDGRVLTVNKATPKEARPE 204
E+ GR + V+ T + PE
Sbjct: 383 NGQLEIAGRAIKVSAVTDQTEVPE 406
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ +SE L F++ G + A VI +K T +S+G+GFV E +A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ +DGR N A+ +RP
Sbjct: 85 PTP-IIDGRRANCNLASLGRSRP 106
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTM 269
V+VG L W + L F ++G++ A ++ D+ TGRS+G+GFVT
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ +SE L F++ G + A VI +K T +S+G+GFV E +A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 181 FSGYELDGRVLTVNKATPKEARP 203
+ +DGR N A+ +RP
Sbjct: 85 PTP-IIDGRRANCNLASLGRSRP 106
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTM 269
V+VG L W + L F ++G++ A ++ D+ TGRS+G+GFVT
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+++ N+P + L F+ G V +A++ +D+ TG S+ FGF++ S+A AI +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 283 DGQSLDGRTIRVSV 296
+G L G+ ++V +
Sbjct: 401 NGCQLSGKKLKVQL 414
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+F+ N+P + E + LA F+ G V A+V +KAT S+ FGF+ + + A+N
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 182 SGYELDGRVLTV 193
+G +L G+ L V
Sbjct: 401 NGCQLSGKKLKV 412
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+VG L W T + F + G + A I+ D+ TG+S+G+GFVT E+D A
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF-RESDSATRAVAD 77
Query: 283 DGQSLDGRTIRVSVA 297
+DGR ++A
Sbjct: 78 PNPVIDGRKANCNIA 92
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ ++ + F++ G + A +I +KAT +S+G+GFV ++ +A+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 181 FSGYELDGRVLTVNKATPKEARPERP 206
+ +DGR N A+ RP P
Sbjct: 78 PNP-VIDGRKANCNIASFGRPRPSTP 102
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+VG L W T + F + G + A I+ D+ TG+S+G+GFVT A+A
Sbjct: 19 VFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADP 78
Query: 283 DGQSLDGRTIRVSVA 297
+ +DGR ++A
Sbjct: 79 N-PVIDGRKANCNIA 92
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
V+VG L W T + F + G + A I+ D+ TG+S+G+GFVT E+D A
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF-RESDSATRAVAD 77
Query: 283 DGQSLDGRTIRVSVA 297
+DGR ++A
Sbjct: 78 PNPVIDGRKANCNIA 92
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YV NL +S+ + + +F G V ++ DR T +SRG FV S D A ++
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
D + L+GR + VS+A GR+S
Sbjct: 119 DAKILNGRKLTVSIAA--DNGRAS 140
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 34/196 (17%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
+FVGN ++ +L LF++ G V+ ++ G+ FV D E A+ K
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM--------KSGYAFVYFEDERDAEDAIRKL 55
Query: 182 S----GYELDGRVLTVNKATPKEARPERPPRTFXXXXXXXXXXXXVYVGNL-PWSVDTAR 236
GYE R L+V A + R PR ++V N P
Sbjct: 56 DNFPFGYEK--RRLSVEWAKGERGR----PRGDAKAPSNLKPTKTLFVINFDPIRTKEHD 109
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
+E+ F +G V N RI R F FV ++ D A+ A + R + V
Sbjct: 110 IEKHFEPYGKVTNVRI--------RRNFSFVQFETQEDATKALEATQRSKILDRVVSVEY 161
Query: 297 A-------EGRSGGRS 305
A + R+GGRS
Sbjct: 162 ALKDDDERDDRNGGRS 177
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K++V L + + L FE+ G++ ++ +K N+ +GF F+ T E+ KA+
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 181 FSGYELDGRVLTV---------NKATPKE--ARPERPPRTF 210
G LDGRV+ V ++A P+ +P+ PRTF
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YV L + L + F + GN+ + +VMD+ R +GF F+ +E + AI +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 283 DGQSLDGRTIRVSVAEGRS 301
G+ LDGR I V A+ RS
Sbjct: 139 HGKFLDGRVIFVEEAKTRS 157
>AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein 1
| chr3:20515672-20517832 FORWARD LENGTH=597
Length = 597
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 8/180 (4%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K++VG +P+ + + F G + + G F+ T + ++AL
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRAL-A 220
Query: 181 FSGYELDGRVLTVNKATPKEARPERPPRTFXX--XXXXXXXXXXVYVGNLPWSVDTARLE 238
F + R LT+ + K P P R VY+GNL W +
Sbjct: 221 FDRAAMGDRYLTIQQYV-KTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIR 279
Query: 239 EIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIA-ALDGQSLDGRTIRVSVA 297
++F + + + R+ ++ETG +G+ V + AIA LD Q + GR +++ A
Sbjct: 280 KLFSD-CVINSVRLGKNKETGEFKGYAHVDFKDSVSV--AIALKLDQQVICGRPVKICCA 336
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 250 ARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSVAE 298
AR++ D++T R +GFGF+T SE D A+ AL+G+ ++GR I V A+
Sbjct: 95 ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
IFV WD ENL FE G +E V+ +K T + +G+GFV+ T + +AL K
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL-KR 468
Query: 182 SGYELDGRVLTVNKATPKEAR 202
+ R++ N A+ K +
Sbjct: 469 PEKRMYNRIVVCNLASEKPGK 489
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ E + FE+ G + A VI +KA+ +S+G+GFV AE A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 181 FSGYELDGRVLTVNKAT--PKEARPERP 206
+ +DGR N A+ + ++P P
Sbjct: 74 ATP-VIDGRRANCNLASLGLQRSKPSTP 100
>AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=425
Length = 425
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V +L +V+ A L+EIF G V + I MDR RG G+V + AD A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 283 DGQSLDGRTIRVS 295
DG +DG+ ++ +
Sbjct: 160 DGAQIDGKVVKAT 172
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ E + FE+ G + A VI +KA+ +S+G+GFV AE A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 181 FSGYELDGRVLTVNKAT 197
+ +DGR N A+
Sbjct: 74 ATP-VIDGRRANCNLAS 89
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ E + FE+ G + A VI +KA+ +S+G+GFV AE A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 181 FSGYELDGRVLTVNKAT--PKEARPERP 206
+ +DGR N A+ + ++P P
Sbjct: 74 ATP-VIDGRRANCNLASLGLQRSKPSTP 100
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVM-DRETGRSRGFGFVTMSSEADINGAIAA 281
++VGNLP + EE FR+ G +EN ++ E ++ GFGF+ ++E A+
Sbjct: 167 IFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV-E 225
Query: 282 LDGQSLDGRTIRVSVAEGR 300
DG GR + V + +G+
Sbjct: 226 FDGVEFHGRILTVKLDDGK 244
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V L + ++++ F +G ++ +V D+ T + +G+ F+ D+ A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 283 DGQSLDGRTIRVSVAEGRS 301
DGQ +DGR + V V GR+
Sbjct: 200 DGQKIDGRRVLVDVERGRT 218
>AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334617 FORWARD LENGTH=297
Length = 297
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNLP + +E+IF ++G + + + + R + FV D AI
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKV---PPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG +LDG +RV +A G G SS
Sbjct: 66 DGYNLDGCRLRVELAHGGRGQSSS 89
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 108 EEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVI 167
E+ S P D ++F G+L +V + L+ F + A+VI +K T +++G+GFV
Sbjct: 125 EDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVS 184
Query: 168 MSTAEDLEKALNKFSGYELDGRVLTVNKATPKE 200
DL AL + +G + R + + K++ KE
Sbjct: 185 FLNPADLAAALKEMNGKYVGNRPIKLRKSSWKE 217
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VYVGNLP + +E++F ++G V + + R G+ FV D AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKV---PPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG DG +RV +A G G RSS
Sbjct: 66 DGYDFDGHRLRVELAHG--GRRSS 87
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VYVGNLP + +E++F ++G V + + R G+ FV D AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKV---PPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG DG +RV +A G G RSS
Sbjct: 66 DGYDFDGHRLRVELAHG--GRRSS 87
>AT1G16610.2 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=407
Length = 407
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V +L +V+ A L+EIF G V + I MDR RG G+V + AD A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 283 DGQSLDGRTIRVS 295
DG +DG+ ++ +
Sbjct: 160 DGAQIDGKVVKAT 172
>AT1G16610.1 | Symbols: SR45, RNPS1 | arginine/serine-rich 45 |
chr1:5675925-5678686 REVERSE LENGTH=414
Length = 414
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
++V +L +V+ A L+EIF G V + I MDR RG G+V + AD A +
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 283 DGQSLDGRTIRVS 295
DG +DG+ ++ +
Sbjct: 160 DGAQIDGKVVKAT 172
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L +F ++G V + I DR TG SRGF FV + + + A+ LDG+ +DGR I V
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Query: 297 AE 298
A+
Sbjct: 92 AK 93
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 237 LEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAALDGQSLDGRTIRVSV 296
L +F ++G V + I DR TG SRGF FV + + + A+ LDG+ +DGR I V
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Query: 297 AE 298
A+
Sbjct: 92 AK 93
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 122 IFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNKF 181
++VG L +V L F G ++ + ++A + R FGFV ED A++
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 182 SGYELDGRVLTVNKATPKEAR 202
G EL GRVLTVN A P++ +
Sbjct: 75 DGAELYGRVLTVNYALPEKIK 95
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
VYVGNLP + +E++F ++G V + + R G+ FV D AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKV---PPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG DG +RV +A G G RSS
Sbjct: 66 DGYDFDGHRLRVELAHG--GRRSS 87
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 102 DETEGGEEVVASAEPSEDL----KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKAT 157
D+ + G + A+ S+D+ ++FV LP+ E L F + G + ++ +K T
Sbjct: 205 DKDDDGHAMEVEADGSDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDT 264
Query: 158 NQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPK 199
RG FV+ E + A++K GR L + A P+
Sbjct: 265 RSCRGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHILPAKPR 306
>AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
Length = 300
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNLP + +E+IF ++G + + + + R + FV D AI
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKV---PPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG +LDG +RV +A G G SS
Sbjct: 66 DGYNLDGCRLRVELAHGGRGQSSS 89
>AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
Length = 300
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNLP + +E+IF ++G + + + + R + FV D AI
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKV---PPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG +LDG +RV +A G G SS
Sbjct: 66 DGYNLDGCRLRVELAHGGRGQSSS 89
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ +L FE+ G + A VI +K++ +S+G+GFV E +KA
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 181 FSGYELDGRVLTVNKA 196
+DGR N A
Sbjct: 68 -PAPVIDGRRANCNLA 82
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 121 KIFVGNLPWDVESENLAMLFEEAGSVEFAEVIYNKATNQSRGFGFVIMSTAEDLEKALNK 180
K+FVG L W+ +L FE+ G + A VI +K++ +S+G+GFV E +KA
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 181 FSGYELDGRVLTVNKA 196
+DGR N A
Sbjct: 68 -PAPVIDGRRANCNLA 82
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNLP + +E++F ++G V + + R G+ FV D + AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKI---PPRPPGYAFVEFEDARDADDAIYGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG DG +RV +A G G RSS
Sbjct: 66 DGYDFDGHHLRVELAHG--GRRSS 87
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 223 VYVGNLPWSVDTARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
+YVGNLP + +E++F ++G V + + R G+ FV D + AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKI---PPRPPGYAFVEFEDARDADDAIYGR 65
Query: 283 DGQSLDGRTIRVSVAEGRSGGRSS 306
DG DG +RV +A G G RSS
Sbjct: 66 DGYDFDGHHLRVELAHG--GRRSS 87